CX069712

Overview
NameCX069712
Unique NameCX069712
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length388
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX069712 vs. ExPASy Swiss-Prot
Match: H2B11_XENLA (Histone H2B 1.1 OS=Xenopus laevis PE=1 SV=2)

HSP 1 Score: 88.5817 bits (218), Expect = 1.079e-17
Identity = 44/50 (88.00%), Postives = 48/50 (96.00%), Query Frame = -2
Query:  238 GEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 387
            GEASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TS+
Sbjct:   76 GEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSA 125          
BLAST of CX069712 vs. ExPASy Swiss-Prot
Match: H2BL4_STRPU (Late histone H2B.L4 (Fragment) OS=Strongylocentrotus purpuratus PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.409e-17
Identity = 43/50 (86.00%), Postives = 49/50 (98.00%), Query Frame = -2
Query:  238 GEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 387
            GEASRLA+YNKK TI+SRE+QTAVRL+LPGELAKHAVSEGTKAVTK+T+S
Sbjct:   57 GEASRLAQYNKKSTISSREVQTAVRLLLPGELAKHAVSEGTKAVTKYTTS 106          
BLAST of CX069712 vs. ExPASy Swiss-Prot
Match: H2BE_STRPU (Histone H2B, embryonic OS=Strongylocentrotus purpuratus PE=1 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 1.409e-17
Identity = 43/50 (86.00%), Postives = 49/50 (98.00%), Query Frame = -2
Query:  238 GEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 387
            GE+SRLA+YNKK TI+SREIQTAVRL+LPGELAKHAVSEGTKAVTK+T+S
Sbjct:   74 GESSRLAQYNKKSTISSREIQTAVRLILPGELAKHAVSEGTKAVTKYTTS 123          
BLAST of CX069712 vs. ExPASy Swiss-Prot
Match: H2BE2_PSAMI (Histone H2B.2, embryonic OS=Psammechinus miliaris PE=3 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 1.409e-17
Identity = 43/50 (86.00%), Postives = 49/50 (98.00%), Query Frame = -2
Query:  238 GEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 387
            GE+SRLA+YNKK TI+SREIQTAVRL+LPGELAKHAVSEGTKAVTK+T+S
Sbjct:   73 GESSRLAQYNKKSTISSREIQTAVRLILPGELAKHAVSEGTKAVTKYTTS 122          
BLAST of CX069712 vs. ExPASy Swiss-Prot
Match: H2B1C_HUMAN (Histone H2B type 1-C/E/F/G/I OS=Homo sapiens GN=HIST1H2BC PE=1 SV=3)

HSP 1 Score: 88.1965 bits (217), Expect = 1.409e-17
Identity = 44/49 (89.80%), Postives = 47/49 (95.92%), Query Frame = -2
Query:  241 GEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTS 387
            GEASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TS
Sbjct:   76 GEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTS 124          
BLAST of CX069712 vs. ExPASy Swiss-Prot
Match: H2BL1_PSAMI (Late histone H2B.2.1 OS=Psammechinus miliaris PE=3 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 1.840e-17
Identity = 43/50 (86.00%), Postives = 48/50 (96.00%), Query Frame = -2
Query:  238 GEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 387
            GEASRLA YNKK TI+SRE+QTAVRL+LPGELAKHAVSEGTKAVTK+T+S
Sbjct:   74 GEASRLAHYNKKSTISSREVQTAVRLLLPGELAKHAVSEGTKAVTKYTTS 123          
BLAST of CX069712 vs. ExPASy Swiss-Prot
Match: H2B_PLADU (Histone H2B OS=Platynereis dumerilii PE=3 SV=2)

HSP 1 Score: 87.4261 bits (215), Expect = 2.403e-17
Identity = 44/49 (89.80%), Postives = 47/49 (95.92%), Query Frame = -2
Query:  238 EASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 384
            EASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   74 EASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 122          
BLAST of CX069712 vs. ExPASy Swiss-Prot
Match: H2B_PATGR (Histone H2B, gonadal OS=Patella granatina PE=1 SV=2)

HSP 1 Score: 87.4261 bits (215), Expect = 2.403e-17
Identity = 44/49 (89.80%), Postives = 47/49 (95.92%), Query Frame = -2
Query:  238 EASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 384
            EASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   73 EASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 121          
BLAST of CX069712 vs. ExPASy Swiss-Prot
Match: H2B_LITVA (Histone H2B (Fragments) OS=Litopenaeus vannamei PE=1 SV=2)

HSP 1 Score: 87.4261 bits (215), Expect = 2.403e-17
Identity = 44/49 (89.80%), Postives = 47/49 (95.92%), Query Frame = -2
Query:  238 EASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 384
            EASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   67 EASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 115          
BLAST of CX069712 vs. ExPASy Swiss-Prot
Match: H2B_DROYA (Histone H2B OS=Drosophila yakuba GN=His2B PE=3 SV=3)

HSP 1 Score: 87.4261 bits (215), Expect = 2.403e-17
Identity = 44/49 (89.80%), Postives = 47/49 (95.92%), Query Frame = -2
Query:  238 EASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 384
            EASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   74 EASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 122          
The following BLAST results are available for this feature:
BLAST of CX069712 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 192
Match NameE-valueIdentityDescription
H2B11_XENLA1.079e-1788.00Histone H2B 1.1 OS=Xenopus laevis PE=1 SV=2[more]
H2BL4_STRPU1.409e-1786.00Late histone H2B.L4 (Fragment) OS=Strongylocentrot... [more]
H2BE_STRPU1.409e-1786.00Histone H2B, embryonic OS=Strongylocentrotus purpu... [more]
H2BE2_PSAMI1.409e-1786.00Histone H2B.2, embryonic OS=Psammechinus miliaris ... [more]
H2B1C_HUMAN1.409e-1789.80Histone H2B type 1-C/E/F/G/I OS=Homo sapiens GN=HI... [more]
H2BL1_PSAMI1.840e-1786.00Late histone H2B.2.1 OS=Psammechinus miliaris PE=3... [more]
H2B_PLADU2.403e-1789.80Histone H2B OS=Platynereis dumerilii PE=3 SV=2[more]
H2B_PATGR2.403e-1789.80Histone H2B, gonadal OS=Patella granatina PE=1 SV=... [more]
H2B_LITVA2.403e-1789.80Histone H2B (Fragments) OS=Litopenaeus vannamei PE... [more]
H2B_DROYA2.403e-1789.80Histone H2B OS=Drosophila yakuba GN=His2B PE=3 SV=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_12C12_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-12C12-F24-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069712 ID=CX069712; Name=CX069712; organism=Citrus sinensis; type=EST; length=388bp
TTTTTTTTTTTTTCCGAAATCACATTTCATTTTCATATTCTAACATAATG
AACATGCACATCACCTGGATCAGGTCCAAATTTCTAGTACATCCAAACAA
ACCCTAAAAATCCACCAAAGATTTGAAAACACAAAACATAAAAACGACTT
CATCTAGTAAAATTAAAGGCCTAAACTACTAACTACACAAATCACATAAC
ACCCGAATTCACCGACCGATGCAACAAACTTCCTTCAAGAAGAAGTAAAC
TTAGTAACAGCTTTGGTACCCTCAGAAACAGCGTGCTTAGCCAGCTCACC
AGGAAGTACAAGTCTCACAGCGGTCTGAATTTCCCGAGATGTAATCGTCG
GCTTCTTATTGTACCTTGCAAGCCTAGAAGCTTCCCCT
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