CX069709

Overview
NameCX069709
Unique NameCX069709
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length847
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX069709 vs. ExPASy Swiss-Prot
Match: MSBP2_ARATH (Membrane steroid-binding protein 2 OS=Arabidopsis thaliana GN=MSBP2 PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 4.526e-15
Identity = 46/132 (34.85%), Postives = 71/132 (53.79%), Query Frame = 1
Query:  178 TAEELALHNGTDESIPILLGILGSVFDVTKGKSHYGVGGGYNHFAGRDASRAFVSGNFTGDGLTDSLRGLSSTEVKSIVEWREFYFRSYTFVGKLVGRYYNNQGNATKYLKGAEAKAARGAQLLEKQKAEEA 573
            T EEL L++G+D   P+L+ I G ++DV++ +  YG GG Y  FAG+DASRA    +F    LT  + GL + E++++ +W   +   Y  VG +        G   +  + +EAK A  A+ L     EEA
Sbjct:   72 TEEELKLYDGSDSKKPLLMAIKGQIYDVSQSRMFYGPGGPYALFAGKDASRALAKMSFEDQDLTGDISGLGAFELEALQDWEYKFMSKYVKVGTI----QKKDGEGKESSEPSEAKTA-SAEGLSTNTGEEA 198          
BLAST of CX069709 vs. ExPASy Swiss-Prot
Match: NENF_RAT (Neudesin OS=Rattus norvegicus GN=Nenf PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 5.005e-14
Identity = 43/109 (39.45%), Postives = 61/109 (55.96%), Query Frame = 1
Query:  169 RLFTAEELALHNGTDESIPILLGILGSVFDVTKGKSHYGVGGGYNHFAGRDASRAFVSGNFTGDGLTDSLRGLSSTEVKSIVE-WREFYFRSYTFVGKLVGRYYNNQGN 492
            RLFT EELA ++G +E  PI L + G VFDVT GK  YG G  YN  AG+D+SR     +     LT  + GL++ E++++ + + + Y   Y  VG    R  N  G+
Sbjct:   44 RLFTEEELARYSGEEEDQPIYLAVKGVVFDVTSGKEFYGRGAPYNALAGKDSSRGVAKMSLDPADLTHDISGLTAKELEALDDIFSKVYKAKYPIVGYTARRILNEDGS 152          
BLAST of CX069709 vs. ExPASy Swiss-Prot
Match: NENF_MOUSE (Neudesin OS=Mus musculus GN=Nenf PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.456e-13
Identity = 43/109 (39.45%), Postives = 59/109 (54.13%), Query Frame = 1
Query:  169 RLFTAEELALHNGTDESIPILLGILGSVFDVTKGKSHYGVGGGYNHFAGRDASRAFVSGNFTGDGLTDSLRGLSSTEVKSIVE-WREFYFRSYTFVGKLVGRYYNNQGN 492
            RLFT EELA + G +E  PI L + G VFDVT GK  YG G  YN  AG+D+SR     +     LT    GL++ E++++ + + + Y   Y  VG    R  N  G+
Sbjct:   44 RLFTEEELARYGGEEEDQPIYLAVKGVVFDVTSGKEFYGRGAPYNALAGKDSSRGVAKMSLDPADLTHDTTGLTAKELEALDDVFSKVYKAKYPIVGYTARRILNEDGS 152          
BLAST of CX069709 vs. ExPASy Swiss-Prot
Match: NENF_HUMAN (Neudesin OS=Homo sapiens GN=NENF PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.237e-13
Identity = 42/109 (38.53%), Postives = 58/109 (53.21%), Query Frame = 1
Query:  169 RLFTAEELALHNGTDESIPILLGILGSVFDVTKGKSHYGVGGGYNHFAGRDASRAFVSGNFTGDGLTDSLRGLSSTEVKSIVE-WREFYFRSYTFVGKLVGRYYNNQGN 492
            RLFT EELA + G +E  PI L + G VFDVT GK  YG G  YN   G+D++R     +     LT    GL++ E++++ E + + Y   Y  VG    R  N  G+
Sbjct:   45 RLFTEEELARYGGEEEDQPIYLAVKGVVFDVTSGKEFYGRGAPYNALTGKDSTRGVAKMSLDPADLTHDTTGLTAKELEALDEVFTKVYKAKYPIVGYTARRILNEDGS 153          
BLAST of CX069709 vs. ExPASy Swiss-Prot
Match: NENF_BOVIN (Neudesin OS=Bos taurus GN=NENF PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 9.438e-13
Identity = 41/109 (37.61%), Postives = 57/109 (52.29%), Query Frame = 1
Query:  169 RLFTAEELALHNGTDESIPILLGILGSVFDVTKGKSHYGVGGGYNHFAGRDASRAFVSGNFTGDGLTDSLRGLSSTEVKSIVE-WREFYFRSYTFVGKLVGRYYNNQGN 492
            RLFT EELA + G +E  PI + + G VFDVT GK  YG G  YN   G+D++R     +     LT    GL++ E++S+ + +   Y   Y  VG    R  N  G+
Sbjct:   42 RLFTEEELARYGGEEEDQPIYMAVKGVVFDVTSGKEFYGRGAPYNALTGKDSTRGVAKMSLDPADLTHDTTGLTAEELESLDDVFTRVYKAKYPIVGYTARRILNEDGS 150          
BLAST of CX069709 vs. ExPASy Swiss-Prot
Match: PGRC2_RAT (Membrane-associated progesterone receptor component 2 OS=Rattus norvegicus GN=Pgrmc2 PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.044e-11
Identity = 44/113 (38.94%), Postives = 63/113 (55.75%), Query Frame = 1
Query:  139 SPKLLLSR-QQRLFTAEELALHNGTDESIPILLGILGSVFDVTKGKSHYGVGGGYNHFAGRDASRAFVSGNFTGDGLT---DSLRGLSSTEVKSIVEWREFYFRSYTFVGKLV 465
            SP   L R ++R F+ E+L  ++G   +  ILL + G VFDVTKG   YG  G Y  FAGRDASR   +     D L    D L  L++ +++S+ EW   +   Y +VG+L+
Sbjct:   84 SPAATLPRMKKRDFSLEQLRQYDGA-RTPRILLAVNGKVFDVTKGSKFYGPAGPYGIFAGRDASRGLATFCLDKDALRDEYDDLSDLNAVQMESVREWEMQFKEKYDYVGRLL 195          
BLAST of CX069709 vs. ExPASy Swiss-Prot
Match: PGRC2_MOUSE (Membrane-associated progesterone receptor component 2 OS=Mus musculus GN=Pgrmc2 PE=1 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 1.044e-11
Identity = 44/113 (38.94%), Postives = 63/113 (55.75%), Query Frame = 1
Query:  139 SPKLLLSR-QQRLFTAEELALHNGTDESIPILLGILGSVFDVTKGKSHYGVGGGYNHFAGRDASRAFVSGNFTGDGLT---DSLRGLSSTEVKSIVEWREFYFRSYTFVGKLV 465
            SP   L R ++R F+ E+L  ++G   +  ILL + G VFDVTKG   YG  G Y  FAGRDASR   +     D L    D L  L++ +++S+ EW   +   Y +VG+L+
Sbjct:   84 SPAATLPRMKKRDFSLEQLRQYDGA-RTPRILLAVNGKVFDVTKGSKFYGPAGPYGIFAGRDASRGLATFCLDKDALRDEYDDLSDLNAVQMESVREWEMQFKEKYDYVGRLL 195          
BLAST of CX069709 vs. ExPASy Swiss-Prot
Match: PGRC2_HUMAN (Membrane-associated progesterone receptor component 2 OS=Homo sapiens GN=PGRMC2 PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.044e-11
Identity = 44/113 (38.94%), Postives = 64/113 (56.64%), Query Frame = 1
Query:  139 SPKLLLSR-QQRLFTAEELALHNGTDESIPILLGILGSVFDVTKGKSHYGVGGGYNHFAGRDASRAFVSGNFTGDGLT---DSLRGLSSTEVKSIVEWREFYFRSYTFVGKLV 465
            SP   L R ++R F+ E+L  ++G+  +  ILL + G VFDVTKG   YG  G Y  FAGRDASR   +     D L    D L  L++ +++S+ EW   +   Y +VG+L+
Sbjct:   90 SPATSLPRMKKRDFSLEQLRQYDGS-RNPRILLAVNGKVFDVTKGSKFYGPAGPYGIFAGRDASRGLATFCLDKDALRDEYDDLSDLNAVQMESVREWEMQFKEKYDYVGRLL 201          
BLAST of CX069709 vs. ExPASy Swiss-Prot
Match: MSBP1_ARATH (Membrane steroid-binding protein 1 OS=Arabidopsis thaliana GN=MSBP1 PE=1 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 2.325e-11
Identity = 35/93 (37.63%), Postives = 52/93 (55.91%), Query Frame = 1
Query:  178 TAEELALHNGTDESIPILLGILGSVFDVTKGKSHYGVGGGYNHFAGRDASRAFVSGNFTGDGLTDSLRGLSSTEVKSIVEWREFYFRSYTFVG 456
            T EEL  ++G+D   P+L+ I   ++DVT+ +  YG GG Y  FAG+DASRA    +F    LT  + GL   E+ ++ +W   +   Y  VG
Sbjct:   76 TEEELKQYDGSDPQKPLLMAIKHQIYDVTQSRMFYGPGGPYALFAGKDASRALAKMSFEEKDLTWDVSGLGPFELDALQDWEYKFMSKYAKVG 168          
The following BLAST results are available for this feature:
BLAST of CX069709 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
MSBP2_ARATH4.526e-1534.85Membrane steroid-binding protein 2 OS=Arabidopsis ... [more]
NENF_RAT5.005e-1439.45Neudesin OS=Rattus norvegicus GN=Nenf PE=2 SV=1[more]
NENF_MOUSE1.456e-1339.45Neudesin OS=Mus musculus GN=Nenf PE=1 SV=1[more]
NENF_HUMAN4.237e-1338.53Neudesin OS=Homo sapiens GN=NENF PE=1 SV=1[more]
NENF_BOVIN9.438e-1337.61Neudesin OS=Bos taurus GN=NENF PE=2 SV=1[more]
PGRC2_RAT1.044e-1138.94Membrane-associated progesterone receptor componen... [more]
PGRC2_MOUSE1.044e-1138.94Membrane-associated progesterone receptor componen... [more]
PGRC2_HUMAN1.044e-1138.94Membrane-associated progesterone receptor componen... [more]
MSBP1_ARATH2.325e-1137.63Membrane steroid-binding protein 1 OS=Arabidopsis ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_12C10_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-12C10-F20-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069709 ID=CX069709; Name=CX069709; organism=Citrus sinensis; type=EST; length=847bp
GTTTTCTCATTCTCCGTTGAAAAAACATAAACTTTGAGCCTTTTAACAAA
ATTTCCGATGGTTGTTAAGAAAATAATATCATCCCCATTTGTGGCAATTG
CAGTTTTAGTGACTTTGGTCGCTGTAATTTTCAGATTTTCTCCCAAACTC
CTCCTCAGCCGTCAACAGAGATTGTTCACAGCTGAAGAATTGGCATTGCA
CAATGGAACTGATGAATCAATACCAATCCTTTTAGGAATTCTTGGATCAG
TGTTTGATGTGACCAAAGGAAAATCTCATTATGGCGTTGGAGGAGGTTAT
AATCATTTTGCTGGAAGAGATGCTTCCCGTGCATTTGTTTCAGGAAACTT
TACAGGAGATGGACTCACTGATTCATTGCGTGGTCTATCCAGCACAGAGG
TAAAGAGCATTGTCGAATGGCGGGAATTTTATTTCAGAAGTTACACATTT
GTTGGTAAGCTAGTGGGTCGTTACTACAATAACCAGGGGAATGCTACAAA
ATATCTGAAAGGAGCTGAAGCAAAGGCTGCTAGAGGGGCACAGCTTTTGG
AGAAACAGAAGGCTGAAGAGGCTAAACAACCTGGTTGCAACTCAAGGTGG
AGTCAGGATGAGGGTGGAGAGGTTTGGTGCGACACCGGCTTCCCAAGGTT
AGTTCAAAGACCTTTAGAAATTGCTTTGACTGGAAAGATGAGCAAGCGAT
GTGCTTGCTTTCTAGAAGATCAGCTTGATCAGCAAGGTTTGGAAGTGTAC
GAAGGATGTGATTATCTTGCCCAGACATGCCGAGTTTAAAAGGTCCTATA
CTGTAGATCTTAACTTTTTTCTCGAGTGTATTTATATTCATAGACAT
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