CX069706

Overview
NameCX069706
Unique NameCX069706
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length839
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX069706 vs. ExPASy Swiss-Prot
Match: PME43_ARATH (Putative pectinesterase/pectinesterase inhibitor 43 OS=Arabidopsis thaliana GN=PME43 PE=2 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 6.042e-28
Identity = 59/129 (45.74%), Postives = 73/129 (56.59%), Query Frame = -2
Query:  452 AQGRTDPNQNTGTSIHNCTIRASNDLASGSQTVQTYLGRPWKEYSRTVYMQTFMDSLINPAGWHDWSGDFALSTLYYAEYNNTGPGSDTTNRVTWPGYHIIDATEAANFTVSNFLSGDNWLPQTGVPYN 838
            AQGR D  + TG  IHN  I             + +LGRPWKE+SRT+ M T +D +I+P GW  W+  FAL+TL+Y EY N G GS    RV W G   I    A  F   NFL G+ W+PQT +PYN
Sbjct:  571 AQGRKDRRETTGIVIHNSRITGDASYLPVKAKNRAFLGRPWKEFSRTIIMNTEIDDVIDPEGWLKWNETFALNTLFYTEYRNRGRGSGQGRRVRWRGIKRISDRAAREFAPGNFLRGNTWIPQTRIPYN 699          
BLAST of CX069706 vs. ExPASy Swiss-Prot
Match: PME_PETIN (Pectinesterase OS=Petunia integrifolia GN=PPE1 PE=2 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 1.031e-27
Identity = 62/134 (46.27%), Postives = 79/134 (58.96%), Query Frame = -2
Query:  446 AQGRTDPNQNTGTSIHNCTIRASNDLASGSQTVQTYLGRPWKEYSRTVYMQTFMDSLINPAGWHDWS-GDFALSTLYYAEYNNTGPGSDTTNRVTWPGYHIIDATEAA-NFTVSNFLSGD-NWLPQTGVPYNGG 838
            AQGRT+P Q     + NC I+   D  S S   +TYLGRPWKEYSRT+ MQ+++D  I P GW  W+  +F   T YYAEY N GPG+    R+TW G+      EAA  FT   +++ D NWL +  VPY  G
Sbjct:  237 AQGRTEPIQKGAIVLQNCEIKPDTDYFSLSPPSKTYLGRPWKEYSRTIIMQSYIDKFIEPEGWAPWNITNFGRDTSYYAEYQNRGPGAALDKRITWKGFQKGFTGEAAQKFTAGVYINNDENWLQKANVPYEAG 370          
BLAST of CX069706 vs. ExPASy Swiss-Prot
Match: PME3_PHAVU (Pectinesterase 3 OS=Phaseolus vulgaris GN=MPE3 PE=2 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 3.315e-26
Identity = 59/131 (45.04%), Postives = 79/131 (60.31%), Query Frame = -2
Query:  452 AQGRTDPNQNTGTSIHNCTIRASNDLASGSQTVQTYLGRPWKEYSRTVYMQTFMDSLINPAGWHDWSGDF-ALSTLYYAEYNNTGPGSDTTNRVTWPGYH-IIDATEAANFTVSNFLSGDNWLPQTGVPYN 838
            AQG+ DPNQNTG  I   TI    +    + T  TYLGRPWK++S TV MQ+ + +L+NP GW  W  +    +T++YAEY N+GPG+D + RV W GY   I    A  FTV +F+ G  WLP   V ++
Sbjct:  452 AQGKKDPNQNTGIIIQKSTITPFGN----NLTAPTYLGRPWKDFSTTVIMQSDIGALLNPVGWMSWVPNVEPPTTIFYAEYQNSGPGADVSQRVKWAGYKPTITDRNAEEFTVQSFIQGPEWLPNAAVQFD 578          
BLAST of CX069706 vs. ExPASy Swiss-Prot
Match: PME51_ARATH (Probable pectinesterase/pectinesterase inhibitor 51 OS=Arabidopsis thaliana GN=PME51 PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.260e-25
Identity = 56/124 (45.16%), Postives = 76/124 (61.29%), Query Frame = -2
Query:  479 AQGRTDPNQNTGTSIHNCTIRASND----LASGSQTVQTYLGRPWKEYSRTVYMQTFMDSLINPAGWHDWSGDFALSTLYYAEYNNTGPGSDTTNRVTWPGYHIIDATEAANFTVSNFLSGDNW 838
            AQGR DP+Q+TG    NC I  + +      +  +  + +LGRPWK+YSRTV++   +++LI P GW  WSGDFAL TLYY E  NTGPGSD + RV+W     I       ++V+NF+  D W
Sbjct:  425 AQGRIDPSQSTGFVFLNCLINGTEEYMKLFKANPKVHKNFLGRPWKDYSRTVFIGCNLEALITPDGWLPWSGDFALKTLYYGESKNTGPGSDRSQRVSWSSQ--IPDEHVHVYSVANFIQADEW 546          
BLAST of CX069706 vs. ExPASy Swiss-Prot
Match: PME54_ARATH (Probable pectinesterase/pectinesterase inhibitor 54 OS=Arabidopsis thaliana GN=PME54 PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 3.665e-25
Identity = 53/121 (43.80%), Postives = 75/121 (61.98%), Query Frame = -2
Query:  482 AQGRTDPNQNTGTSIHNCTIRASNDLASGSQTVQTYLGRPWKEYSRTVYMQTFMDSLINPAGWHDW--SGDFALSTLYYAEYNNTGPGSDTTNRVTWPGYHIIDATEAANFTVSNFLSGDN 838
            A GRTD  QNTG ++H+C IR  +DL+       +YLGRPW++YSR + M++++D  I   GW  W  SGD  L TLY+ E+ N GP +  + RVTW G+H I   EA  F+V    +G++
Sbjct:  377 ANGRTDQRQNTGFALHSCRIRTDSDLSPVKHKYSSYLGRPWRKYSRAIVMESYIDDAIAEGGWAGWLDSGDEVLKTLYFGEFKNYGPKARISKRVTWEGFHSIGFEEANYFSVVKRRNGED 497          
BLAST of CX069706 vs. ExPASy Swiss-Prot
Match: PME64_ARATH (Probable pectinesterase/pectinesterase inhibitor 64 OS=Arabidopsis thaliana GN=PME64 PE=2 SV=2)

HSP 1 Score: 114.005 bits (284), Expect = 1.066e-24
Identity = 56/128 (43.75%), Postives = 76/128 (59.38%), Query Frame = -2
Query:  467 AQGRTDPNQNTGTSIHNCTIRASNDLASGSQTV----QTYLGRPWKEYSRTVYMQTFMDSLINPAGWHDWSGDFALSTLYYAEYNNTGPGSDTTNRVTWPGYHIIDATEAANFTVSNFLSGDNWLPQT 838
            A GR D +Q+TG    NC+I  + +     Q      + +LGRPWKE+SRTV++   ++SLI+P GW  W+GDFAL TLYY EY NTGPGS  ++RV W     I       ++V+NF+  D W   T
Sbjct:  476 AHGRIDASQSTGFVFLNCSINGTEEYMKEFQANPEGHKNFLGRPWKEFSRTVFVNCNLESLISPDGWMPWNGDFALKTLYYGEYKNTGPGSVRSSRVPWSSE--IPEKHVDVYSVANFIQADEWASTT 601          
BLAST of CX069706 vs. ExPASy Swiss-Prot
Match: PME_BRANA (Probable pectinesterase/pectinesterase inhibitor OS=Brassica napus GN=BP19 PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 1.104e-21
Identity = 49/120 (40.83%), Postives = 69/120 (57.50%), Query Frame = -2
Query:  446 GTSIHNCTIRASNDLASGSQTVQTYLGRPWKEYSRTVYMQTFMDSLINPAGWHDWSGDFALSTLYYAEYNNTGPGSDTTNRVTWPGYHIIDATEAANFTVSNFLSGDNWLPQTGVPYNGG 805
            G  +HNC I A  +L +   TV++YLGRPWK ++ T  + T +  LI P GW++W G+    T  Y E+NN GPG++T  RV W       A E   FTV+N+L+  NW+ +  VP   G
Sbjct:  465 GIVLHNCRIMADKELEADRLTVKSYLGRPWKPFATTAVIGTEIGDLIQPTGWNEWQGEKFHLTATYVEFNNRGPGANTAARVPW-AKMAKSAAEVERFTVANWLTPANWIQEANVPVQLG 583          
BLAST of CX069706 vs. ExPASy Swiss-Prot
Match: PME_BRACM (Pectinesterase/pectinesterase inhibitor (Fragment) OS=Brassica campestris PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 4.637e-20
Identity = 46/115 (40.00%), Postives = 66/115 (57.39%), Query Frame = -2
Query:  461 GTSIHNCTIRASNDLASGSQTVQTYLGRPWKEYSRTVYMQTFMDSLINPAGWHDWSGDFALSTLYYAEYNNTGPGSDTTNRVTWPGYHIIDATEAANFTVSNFLSGDNWLPQTGV 805
            G  +HNC I A  +L +   TV++YLGRPWK ++ T  + T +  LI P GW++W G+    T  Y E+NN GPG++   RV W       A E   FTV+N+L+  NW+ +  V
Sbjct:  452 GIVLHNCRIMADKELEADRLTVKSYLGRPWKPFATTAVIGTEIGDLIQPTGWNEWQGEKFHLTATYVEFNNRGPGANPAARVPW-AKMAKSAAEVERFTVANWLTPANWIQEANV 565          
BLAST of CX069706 vs. ExPASy Swiss-Prot
Match: PME37_ARATH (Probable pectinesterase/pectinesterase inhibitor VGDH2 OS=Arabidopsis thaliana GN=VGDH2 PE=2 SV=2)

HSP 1 Score: 98.5969 bits (244), Expect = 4.637e-20
Identity = 46/120 (38.33%), Postives = 67/120 (55.83%), Query Frame = -2
Query:  446 GTSIHNCTIRASNDLASGSQTVQTYLGRPWKEYSRTVYMQTFMDSLINPAGWHDWSGDFALSTLYYAEYNNTGPGSDTTNRVTWPGYHIIDATEAANFTVSNFLSGDNWLPQTGVPYNGG 805
            G  +HNC I    +L +   T+++YLGRPWK+++ TV + T +  LI P GW +W G+    T  Y E+NN GPG+ TT R  W       A E   +TV+N++   NW+ +  VP   G
Sbjct:  469 GIVLHNCRIIPDKELEADKLTIKSYLGRPWKKFATTVIIGTEIGDLIKPEGWTEWQGEQNHKTAKYIEFNNRGPGAATTQRPPWVKV-AKSAAEVETYTVANWVGPANWIQEANVPVQLG 587          
BLAST of CX069706 vs. ExPASy Swiss-Prot
Match: PME4_ARATH (Pectinesterase 4 OS=Arabidopsis thaliana GN=PME4 PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 1.033e-19
Identity = 50/120 (41.67%), Postives = 60/120 (50.00%), Query Frame = -2
Query:  446 GTSIHNCTIRASNDLASGSQTVQTYLGRPWKEYSRTVYMQTFMDSLINPAGWHDWSGDFALSTLYYAEYNNTGPGSDTTNRVTWPGYHIIDATEAANFTVSNFLSGDNWLPQTGVPYNGG 805
            G  + NC I     L     TV TYLGRPWK++S TV M T M  LI P GW  W G+    +  Y EYNN GPG+    RV W       A E   FT +N+L   NW+ +  VP   G
Sbjct:  469 GIVLQNCRIVPDRKLTPERLTVATYLGRPWKKFSTTVIMSTEMGDLIRPEGWKIWDGESFHKSCRYVEYNNRGPGAFANRRVNWAKV-ARSAAEVNGFTAANWLGPINWIQEANVPVTIG 587          
The following BLAST results are available for this feature:
BLAST of CX069706 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 70
Match NameE-valueIdentityDescription
PME43_ARATH6.042e-2845.74Putative pectinesterase/pectinesterase inhibitor 4... [more]
PME_PETIN1.031e-2746.27Pectinesterase OS=Petunia integrifolia GN=PPE1 PE=... [more]
PME3_PHAVU3.315e-2645.04Pectinesterase 3 OS=Phaseolus vulgaris GN=MPE3 PE=... [more]
PME51_ARATH1.260e-2545.16Probable pectinesterase/pectinesterase inhibitor 5... [more]
PME54_ARATH3.665e-2543.80Probable pectinesterase/pectinesterase inhibitor 5... [more]
PME64_ARATH1.066e-2443.75Probable pectinesterase/pectinesterase inhibitor 6... [more]
PME_BRANA1.104e-2140.83Probable pectinesterase/pectinesterase inhibitor O... [more]
PME_BRACM4.637e-2040.00Pectinesterase/pectinesterase inhibitor (Fragment)... [more]
PME37_ARATH4.637e-2038.33Probable pectinesterase/pectinesterase inhibitor V... [more]
PME4_ARATH1.033e-1941.67Pectinesterase 4 OS=Arabidopsis thaliana GN=PME4 P... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_12C09_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-12C09-F18-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069706 ID=CX069706; Name=CX069706; organism=Citrus sinensis; type=EST; length=839bp
CTCGAGAGCCAAAAATTTCTTCTTCAAATGGGCTATTTGCGCATATGTGT
TAACAATAAAACGTTAACAGAATTAGGATTAATTGTTGACAAACTTTAAT
ATTTGTTACCAGAATGATAGAGTTGTGCAAAATTTAGGAAATAAGTAGCA
TAATAAAAAGCAGTAGGGACGATTCACTGTTGCGGATATTTCATCATCAA
TTTCGATAACAACATTATTTAAACATCTTAGTCATTGGAGTACTTCTACT
GCAAAAAAGTTAAAAATAAAAAAAATACAATAGCAGTTCAAATATTAAAT
TTATTGTCAATACAATTGTACATTTGAATAGCTTGTGTATCACACATGAT
TATTGAGTTTGCAAAGCAATTTCCCAAAAAAAAAAAACCGACGAACAGGA
AGCTTCACAAGATGAGTAGCTTAATTAAAAAAATTAACTAATGAAACCAC
CGTTGTAAGGCACTCCAGTTTGCGGTAACCAATTGTCCCCAGACAAGAAA
TTAGAAACGGTGAAATTAGCGGCTTCTGTGGCATCGATGATATGGTAACC
CGGCCAAGTCACCCTATTGGTGGTGTCTGACCCTGGGCCGGTATTATTGT
ACTCGGCATAATACAATGTAGATAGTGCAAAATCGCCGCTCCAATCGTGC
CAACCAGCAGGGTTTATCAAACTATCCATGAAAGTTTGCATGTAAACAGT
TCTAGAGTACTCCTTCCATGGCCTCCCCAGATATGTCTGCACCGTTTGAC
TGCCCGACGCCAGATCATTGGATGCTCTAATTGTGCAATTATGGATGGAC
GTGCCGGTATTCTGGTTAGGATCGGTCCTACCTTGTGCT
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