CX069706

Overview
NameCX069706
Unique NameCX069706
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length839
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX069706 vs. ExPASy Swiss-Prot
Match: PME5_ARATH (Pectinesterase 5 OS=Arabidopsis thaliana GN=PME5 PE=2 SV=2)

HSP 1 Score: 94.7449 bits (234), Expect = 6.695e-19
Identity = 47/120 (39.17%), Postives = 65/120 (54.17%), Query Frame = -2
Query:  446 GTSIHNCTIRASNDLASGSQTVQTYLGRPWKEYSRTVYMQTFMDSLINPAGWHDWSGDFALSTLYYAEYNNTGPGSDTTNRVTWPGYHIIDATEAANFTVSNFLSGDNWLPQTGVPYNGG 805
            G  + NC I     LA+    V++YLGRPWK++S TV + + +  +I P GW  W G+    +  Y EYNN GPG+ T  RV W       A E  +FTV+N+L   NW+ +  VP   G
Sbjct:  476 GIVLQNCRIVPDKKLAAERLIVESYLGRPWKKFSTTVIINSEIGDVIRPEGWKIWDGESFHKSCRYVEYNNRGPGAITNRRVNWVKI-ARSAAEVNDFTVANWLGPINWIQEANVPVTLG 594          
BLAST of CX069706 vs. ExPASy Swiss-Prot
Match: PME_MEDSA (Pectinesterase/pectinesterase inhibitor OS=Medicago sativa PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 9.668e-18
Identity = 49/137 (35.77%), Postives = 70/137 (51.09%), Query Frame = -2
Query:  446 AQGRTDPNQNTGTSIHNCTIRASNDLASGSQTVQTYLGRPWKEYSRTVYMQTFMDSLINPAGWHDWSGDFALSTLYYAEYNNTGPGSDTTNRVTWPGYHIIDATEAAN------FTVSNFLSGDNWLPQTGVPYNGG 838
            A GR   N  +     +        L S +  V +YLGRPWK+YS+ V M + +D++  P G+  W G     T  Y EYNN GPG+DT  RV W G  ++ +  AA       F + N  + D W+ ++GVPY+ G
Sbjct:  310 AGGREKQNSASALVFQSSHFTGEPALTSVTPKV-SYLGRPWKQYSKVVIMDSTIDAIFVPEGYMPWMGSAFKETCTYYEYNNKGPGADTNLRVKWHGVKVLTSNVAAEYYPGKFFEIVNATARDTWIVKSGVPYSLG 445          
BLAST of CX069706 vs. ExPASy Swiss-Prot
Match: PME8_ARATH (Probable pectinesterase 8 OS=Arabidopsis thaliana GN=PME8 PE=2 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 5.305e-16
Identity = 43/121 (35.54%), Postives = 68/121 (56.20%), Query Frame = -2
Query:  476 AQGRTDPNQNTGTSIHNCTIRASNDLASGSQTVQTYLGRPWKEYSRTVYMQTFMDSLINPAGWHDWSGDFALSTLYYAEYNNTGPGSDTTNRVTWPGYHIIDATEAANFTVSNFLSGDNWL 838
            A GR+  ++N+G S  NCTI           T   +LGR W+ YSR V++ T M  +I P GW++++     +T++Y EYN +GPG+D + R   P    ++ T+ A    ++F+ GD WL
Sbjct:  279 ANGRSSKDENSGFSFVNCTIGG---------TGHVWLGRAWRPYSRVVFVSTTMTDVIAPEGWNNFNDPSRDATIFYGEYNCSGPGADMSKRA--PYVQKLNETQVALLINTSFIDGDQWL 388          
BLAST of CX069706 vs. ExPASy Swiss-Prot
Match: PME11_ARATH (Putative pectinesterase 11 OS=Arabidopsis thaliana GN=PME11 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.439e-15
Identity = 41/121 (33.88%), Postives = 59/121 (48.76%), Query Frame = -2
Query:  476 AQGRTDPNQNTGTSIHNCTIRASNDLASGSQTVQTYLGRPWKEYSRTVYMQTFMDSLINPAGWHDWSGDFALSTLYYAEYNNTGPGSDTTNRVTWPGYHIIDATEAANFTVSNFLSGDNWL 838
            AQ RT   + +G +   C +  S           T+LGRPW  YSR V+  +F  +++ P GW+ W      +T+YY EY   GPG+D   RV W     +   EA  F   +F+ G +WL
Sbjct:  223 AQMRTSATEKSGFTFLGCKLTGSGS---------TFLGRPWGAYSRVVFAYSFFSNVVAPQGWNQWGDSTKENTVYYGEYKCYGPGADREQRVEWSKQ--LSDEEATVFLSKDFIGGKDWL 332          
BLAST of CX069706 vs. ExPASy Swiss-Prot
Match: PME15_ARATH (Probable pectinesterase 15 OS=Arabidopsis thaliana GN=PME15 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.229e-14
Identity = 42/126 (33.33%), Postives = 65/126 (51.59%), Query Frame = -2
Query:  461 AQGRTDPNQNTGTSIHNCTIRASNDLASGSQTVQTYLGRPWKEYSRTVYMQTFMDSLINPAGWHDWSGDFALSTLYYAEYNNTGPGSDTTNRVTWPGYHIIDATEAANFTVSNFLSGDNWLPQTGV 838
            AQGR   ++ +G S  NC I  S ++          LGR W  Y+  V+  T+M  +I P GW++W       T+ + E+   GPG+D   RV + G  + D +EA++F   +F+ GD WL  T +
Sbjct:  276 AQGRQSEDEQSGFSFVNCKIDGSGEIL---------LGRAWGAYATVVFSNTYMSGIITPEGWNNWGDSTKEKTVTFGEHKCYGPGADYKERVLF-GKQLTD-SEASSFIDVSFIDGDEWLRHTNI 390          
BLAST of CX069706 vs. ExPASy Swiss-Prot
Match: PME62_ARATH (Pectinesterase QRT1 OS=Arabidopsis thaliana GN=QRT1 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.106e-13
Identity = 44/121 (36.36%), Postives = 54/121 (44.63%), Query Frame = -2
Query:  476 AQGRTDPNQNTGTSIHNCTIRASNDLASGSQTVQTYLGRPWKEYSRTVYMQTFMDSLINPAGWHDWSGDFALSTLYYAEYNNTGPGSDTTNRVTWPGYHIIDATEAANFTVSNFLSGDNWL 838
            A  R    ++TG S  NC I         S T Q YLGR W  YSRTVY   F+  +I P GW DW        + + EYN  G G++   RV W     +   E   F    F+ GD WL
Sbjct:  269 AHHRDSETEDTGFSFVNCDI---------SGTGQIYLGRAWGNYSRTVYSNCFIADIITPVGWSDWKHPERQRKVMFGEYNCRGRGAERGGRVPWS--KTLTRDEVKPFLGREFIYGDQWL 378          
BLAST of CX069706 vs. ExPASy Swiss-Prot
Match: PME53_ARATH (Probable pectinesterase 53 OS=Arabidopsis thaliana GN=PME53 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.106e-13
Identity = 40/121 (33.06%), Postives = 60/121 (49.59%), Query Frame = -2
Query:  476 AQGRTDPNQNTGTSIHNCTIRASNDLASGSQTVQTYLGRPWKEYSRTVYMQTFMDSLINPAGWHDWSGDFALSTLYYAEYNNTGPGSDTTNRVTWPGYHIIDATEAANFTVSNFLSGDNWL 838
            AQGR+   ++TG S   C +  +  L         YLGR W  +SR V+  T+MD++I P GW++W       T++Y +Y  TG G++   RV W     +   EA  F    F+ G  W+
Sbjct:  272 AQGRSSVLEDTGFSFVKCKVTGTGVL---------YLGRAWGPFSRVVFAYTYMDNIILPRGWYNWGDPSREMTVFYGQYKCTGAGANYGGRVAWA--RELTDEEAKPFLSLTFIDGSEWI 381          
BLAST of CX069706 vs. ExPASy Swiss-Prot
Match: PME14_ARATH (Putative pectinesterase 14 OS=Arabidopsis thaliana GN=PME14 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 9.364e-13
Identity = 38/121 (31.40%), Postives = 62/121 (51.24%), Query Frame = -2
Query:  476 AQGRTDPNQNTGTSIHNCTIRASNDLASGSQTVQTYLGRPWKEYSRTVYMQTFMDSLINPAGWHDWSGDFALSTLYYAEYNNTGPGSDTTNRVTWPGYHIIDATEAANFTVSNFLSGDNWL 838
            A G+      TG    NC I  S          + +LGR W+ Y+R ++ +T+M  +++  GW+D        T+YY E+   GPG++ + RVT+    ++   EAA FT  +F+ G+ WL
Sbjct:  224 ANGKDTLKDRTGFVFVNCKITGS---------ARVWLGRAWRPYARVIFSKTYMSRVVSLDGWNDMGDPKTQRTVYYGEHRCYGPGANHSKRVTYA--KLLSDVEAAPFTNISFIDGEEWL 333          
BLAST of CX069706 vs. ExPASy Swiss-Prot
Match: PME68_ARATH (Probable pectinesterase 68 OS=Arabidopsis thaliana GN=PME68 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.725e-12
Identity = 40/122 (32.79%), Postives = 59/122 (48.36%), Query Frame = -2
Query:  476 AQGRTDPNQNTGTSIHNCTIRASNDLASGSQTVQTYLGRPWKEYSRTVYMQTFMDSLINPAGWHDWSGDFALS-TLYYAEYNNTGPGSDTTNRVTWPGYHIIDATEAANFTVSNFLSGDNWL 838
            A GRT P + TG +   C +  +  L         Y+GR   +YSR VY  T+ D+L+   GW DW      S T ++  YN  GPG+  T  V+W     +D   A  F   +F++G +W+
Sbjct:  247 AHGRTCPEEKTGFAFVGCRVTGTGPL---------YVGRAMGQYSRIVYAYTYFDALVAHGGWDDWDHKSNKSKTAFFGVYNCYGPGAAATRGVSWA--RALDYESAHPFIAKSFVNGRHWI 357          
BLAST of CX069706 vs. ExPASy Swiss-Prot
Match: PME10_ARATH (Putative pectinesterase 10 OS=Arabidopsis thaliana GN=PME10 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.711e-11
Identity = 38/130 (29.23%), Postives = 57/130 (43.85%), Query Frame = -2
Query:  455 AQGRTDPNQNTGTSIHNCTIRASNDLASGSQTVQTYLGRPWKEYSRTVYMQTFMDSLINPAGWHDWSGDFALSTLYYAEYNNTGPGSDTTNRVTWPGYHIIDATE--AANFTVSNFLSGDNWLPQTGVPY 838
            AQGR  P    G    +CT+  S          +  LGR WK YSR ++ ++     I P GW  W        + + E+  TG G+DT+ RV W    +  A+E     FT   F+  + WL +  + +
Sbjct:  223 AQGRDSPTDKGGFVFKDCTVMGSG---------KALLGRAWKSYSRVIFYRSMFSDNILPIGWDAWKAKGQEGHITFVEFGCTGVGADTSKRVPW----LTKASEKDVLQFTNLTFIDEEGWLSRLPIKF 339          
The following BLAST results are available for this feature:
BLAST of CX069706 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 70
Match NameE-valueIdentityDescription
PME5_ARATH6.695e-1939.17Pectinesterase 5 OS=Arabidopsis thaliana GN=PME5 P... [more]
PME_MEDSA9.668e-1835.77Pectinesterase/pectinesterase inhibitor OS=Medicag... [more]
PME8_ARATH5.305e-1635.54Probable pectinesterase 8 OS=Arabidopsis thaliana ... [more]
PME11_ARATH3.439e-1533.88Putative pectinesterase 11 OS=Arabidopsis thaliana... [more]
PME15_ARATH2.229e-1433.33Probable pectinesterase 15 OS=Arabidopsis thaliana... [more]
PME62_ARATH1.106e-1336.36Pectinesterase QRT1 OS=Arabidopsis thaliana GN=QRT... [more]
PME53_ARATH1.106e-1333.06Probable pectinesterase 53 OS=Arabidopsis thaliana... [more]
PME14_ARATH9.364e-1331.40Putative pectinesterase 14 OS=Arabidopsis thaliana... [more]
PME68_ARATH2.725e-1232.79Probable pectinesterase 68 OS=Arabidopsis thaliana... [more]
PME10_ARATH6.711e-1129.23Putative pectinesterase 10 OS=Arabidopsis thaliana... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_12C09_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-12C09-F18-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069706 ID=CX069706; Name=CX069706; organism=Citrus sinensis; type=EST; length=839bp
CTCGAGAGCCAAAAATTTCTTCTTCAAATGGGCTATTTGCGCATATGTGT
TAACAATAAAACGTTAACAGAATTAGGATTAATTGTTGACAAACTTTAAT
ATTTGTTACCAGAATGATAGAGTTGTGCAAAATTTAGGAAATAAGTAGCA
TAATAAAAAGCAGTAGGGACGATTCACTGTTGCGGATATTTCATCATCAA
TTTCGATAACAACATTATTTAAACATCTTAGTCATTGGAGTACTTCTACT
GCAAAAAAGTTAAAAATAAAAAAAATACAATAGCAGTTCAAATATTAAAT
TTATTGTCAATACAATTGTACATTTGAATAGCTTGTGTATCACACATGAT
TATTGAGTTTGCAAAGCAATTTCCCAAAAAAAAAAAACCGACGAACAGGA
AGCTTCACAAGATGAGTAGCTTAATTAAAAAAATTAACTAATGAAACCAC
CGTTGTAAGGCACTCCAGTTTGCGGTAACCAATTGTCCCCAGACAAGAAA
TTAGAAACGGTGAAATTAGCGGCTTCTGTGGCATCGATGATATGGTAACC
CGGCCAAGTCACCCTATTGGTGGTGTCTGACCCTGGGCCGGTATTATTGT
ACTCGGCATAATACAATGTAGATAGTGCAAAATCGCCGCTCCAATCGTGC
CAACCAGCAGGGTTTATCAAACTATCCATGAAAGTTTGCATGTAAACAGT
TCTAGAGTACTCCTTCCATGGCCTCCCCAGATATGTCTGCACCGTTTGAC
TGCCCGACGCCAGATCATTGGATGCTCTAATTGTGCAATTATGGATGGAC
GTGCCGGTATTCTGGTTAGGATCGGTCCTACCTTGTGCT
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