DR403988

Overview
NameDR403988
Unique NameDR403988
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length736
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1234 contig Csv1_Contig1234:147..881. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR403988 vs. ExPASy Swiss-Prot
Match: METK_CARHZ (S-adenosylmethionine synthetase OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=metK PE=3 SV=1)

HSP 1 Score: 223.402 bits (568), Expect = 1.001e-57
Identity = 120/214 (56.07%), Postives = 145/214 (67.76%), Query Frame = 1
Query:  115 LFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVH-------GHFT-KRPEDIGAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTVEYYNDNGAMVPVRVHTVLISTQHDETVTNDEIAADL 732
            LFTSESV EGHPDK+ DQISDAVLDA L QDP+++VACET   T +V+V GEITT   VD  K+VR+T R IG+     G D D C V+ +I++QSPDIA GV+       G  T    E IGAGDQG MFGYAT+ET E MP+   LA +L  RL EVRK+    +LRPDGKTQVTVEY  D     PVRV T+++STQH   V+ +EI  D+
Sbjct:    5 LFTSESVTEGHPDKIADQISDAVLDAILAQDPQARVACETAVTTGLVLVIGEITTSCYVDIPKVVRETIREIGYTRAKYGFDGDTCAVITSIDEQSPDIALGVNRALEAKTGEMTDDEIEAIGAGDQGMMFGYATNETPELMPMPISLAHRLARRLAEVRKSRLLPYLRPDGKTQVTVEYDGDK----PVRVDTIVVSTQHHPDVSQEEIRKDI 214          
BLAST of DR403988 vs. ExPASy Swiss-Prot
Match: METK_THETN (S-adenosylmethionine synthetase OS=Thermoanaerobacter tengcongensis GN=metK PE=3 SV=1)

HSP 1 Score: 223.016 bits (567), Expect = 1.308e-57
Identity = 118/214 (55.14%), Postives = 143/214 (66.82%), Query Frame = 1
Query:  115 LFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRP--------EDIGAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTVEYYNDNGAMVPVRVHTVLISTQHDETVTNDEIAADL 732
            LFTSESV EGHPDK+CDQISDA+LD  L++DP ++VACET   T +V+V GEITT+  VD  +I RD  R IG+     G DAD C V+ +I++QSPDIA GV+     R         E IGAGDQG M G+A DET E MP+  +LA KL  RL EVRKN T S+LRPDGKTQVTVEY  D     PVRV +V++S QH   V +D I  D+
Sbjct:    4 LFTSESVTEGHPDKICDQISDAILDEILKKDPYARVACETAVTTGLVLVMGEITTECYVDIPRIARDVIRDIGYTRAKYGFDADTCAVITSIDEQSPDIAMGVNKALEARRGELTDAEIEAIGAGDQGLMIGFACDETEELMPMPIMLAHKLARRLAEVRKNGTLSYLRPDGKTQVTVEYEEDR----PVRVDSVVVSAQHAPEVDHDTIEKDI 213          
BLAST of DR403988 vs. ExPASy Swiss-Prot
Match: METK_CLOBM (S-adenosylmethionine synthetase OS=Clostridium botulinum (strain Loch Maree / Type A3) GN=metK PE=3 SV=1)

HSP 1 Score: 223.016 bits (567), Expect = 1.308e-57
Identity = 116/213 (54.46%), Postives = 145/213 (68.08%), Query Frame = 1
Query:  115 LFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRP------EDIGAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTVEYYNDNGAMVPVRVHTVLISTQHDETVTNDEIAADLK 735
            LFTSESV EGHPDK+CDQISDAVLDA L++DP  +VACET   T MVMV GEI+TK  VD  K+VR+T R IG+     G D + C V+ +I++QS DIA GV      +       + +GAGDQG MFG+AT+ET E+MP+   +A KL  RL+EVRKN T  +LRPDGKTQVTVEY N      PVR+  ++ISTQH   V  ++I  D+K
Sbjct:    4 LFTSESVTEGHPDKICDQISDAVLDAILDKDPNGRVACETAVTTGMVMVMGEISTKCYVDIPKLVRETIRGIGYDRAKYGFDCETCSVITSIDEQSVDIAMGVDEALESKKGEMDKLDAVGAGDQGMMFGFATNETKEYMPMPIEMAHKLSRRLSEVRKNGTLPYLRPDGKTQVTVEYENGK----PVRIDAIVISTQHGPEVYLEQIEKDIK 212          
BLAST of DR403988 vs. ExPASy Swiss-Prot
Match: METK_CLOBH (S-adenosylmethionine synthetase OS=Clostridium botulinum (strain Hall / ATCC 3502 / NCTC 13319 / Type A) GN=metK PE=3 SV=1)

HSP 1 Score: 223.016 bits (567), Expect = 1.308e-57
Identity = 116/213 (54.46%), Postives = 145/213 (68.08%), Query Frame = 1
Query:  115 LFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRP------EDIGAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTVEYYNDNGAMVPVRVHTVLISTQHDETVTNDEIAADLK 735
            LFTSESV EGHPDK+CDQISDAVLDA L++DP  +VACET   T MVMV GEI+TK  VD  K+VR+T R IG+     G D + C V+ +I++QS DIA GV      +       + +GAGDQG MFG+AT+ET E+MP+   +A KL  RL+EVRKN T  +LRPDGKTQVTVEY N      PVR+  ++ISTQH   V  ++I  D+K
Sbjct:    4 LFTSESVTEGHPDKICDQISDAVLDAILDKDPNGRVACETAVTTGMVMVMGEISTKCYVDIPKLVRETIRGIGYDRAKYGFDCETCSVITSIDEQSVDIAMGVDEALESKKGEMDKLDAVGAGDQGMMFGFATNETKEYMPMPIEMAHKLSRRLSEVRKNGTLPYLRPDGKTQVTVEYENGK----PVRIDAIVISTQHGPEVYLEQIEKDIK 212          
BLAST of DR403988 vs. ExPASy Swiss-Prot
Match: METK_CLOB1 (S-adenosylmethionine synthetase OS=Clostridium botulinum (strain ATCC 19397 / Type A) GN=metK PE=3 SV=1)

HSP 1 Score: 223.016 bits (567), Expect = 1.308e-57
Identity = 116/213 (54.46%), Postives = 145/213 (68.08%), Query Frame = 1
Query:  115 LFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRP------EDIGAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTVEYYNDNGAMVPVRVHTVLISTQHDETVTNDEIAADLK 735
            LFTSESV EGHPDK+CDQISDAVLDA L++DP  +VACET   T MVMV GEI+TK  VD  K+VR+T R IG+     G D + C V+ +I++QS DIA GV      +       + +GAGDQG MFG+AT+ET E+MP+   +A KL  RL+EVRKN T  +LRPDGKTQVTVEY N      PVR+  ++ISTQH   V  ++I  D+K
Sbjct:    4 LFTSESVTEGHPDKICDQISDAVLDAILDKDPNGRVACETAVTTGMVMVMGEISTKCYVDIPKLVRETIRGIGYDRAKYGFDCETCSVITSIDEQSVDIAMGVDEALESKKGEMDKLDAVGAGDQGMMFGFATNETKEYMPMPIEMAHKLSRRLSEVRKNGTLPYLRPDGKTQVTVEYENGK----PVRIDAIVISTQHGPEVYLEQIEKDIK 212          
BLAST of DR403988 vs. ExPASy Swiss-Prot
Match: METK_CLOBJ (S-adenosylmethionine synthetase OS=Clostridium botulinum (strain Kyoto / Type A2) GN=metK PE=3 SV=1)

HSP 1 Score: 222.631 bits (566), Expect = 1.708e-57
Identity = 115/213 (53.99%), Postives = 145/213 (68.08%), Query Frame = 1
Query:  115 LFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRP------EDIGAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTVEYYNDNGAMVPVRVHTVLISTQHDETVTNDEIAADLK 735
            LFTSESV EGHPDK+CDQISDAVLDA L++DP  +VACET   T MVMV GEI+TK  VD  K+VR+T R IG+     G D + C V+ +I++QS DIA GV      +       + +GAGDQG MFG+AT+ET E+MP+   +A KL  RL+EVRKN T  +LRPDGKTQVTVEY N      PVR+  ++ISTQH   +  ++I  D+K
Sbjct:    4 LFTSESVTEGHPDKICDQISDAVLDAILDKDPNGRVACETAVTTGMVMVMGEISTKCYVDIPKLVRETIRGIGYDRAKYGFDCETCSVITSIDEQSVDIAMGVDEALESKKGEMDKLDAVGAGDQGMMFGFATNETKEYMPMPIEMAHKLSRRLSEVRKNGTLPYLRPDGKTQVTVEYENGK----PVRIDAIVISTQHGPEIYLEQIEKDIK 212          
BLAST of DR403988 vs. ExPASy Swiss-Prot
Match: METK_LISW6 (S-adenosylmethionine synthetase OS=Listeria welshimeri serovar 6b (strain ATCC 35897 / DSM 20650 / SLCC5334) GN=metK PE=3 SV=1)

HSP 1 Score: 221.861 bits (564), Expect = 2.913e-57
Identity = 118/214 (55.14%), Postives = 144/214 (67.29%), Query Frame = 1
Query:  115 LFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRP--------EDIGAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTVEYYNDNGAMVPVRVHTVLISTQHDETVTNDEIAADL 732
            LFTSESV++GHPDK+ DQISDA+LDA + +DP+++VACET   T +V+V GEITT   VD  KIVRDT + IG+     G DA+ C VL  I++QSPDIAQGV      R         E IGAGDQG MFG+ATDET E MPL   LA  L  +LTE+RK     +LRPD KTQVTVEY   N    PVR+ T+++STQH   +T +EIA DL
Sbjct:    7 LFTSESVSDGHPDKIADQISDAILDAIISKDPDARVACETTVTTGLVLVAGEITTSVYVDIPKIVRDTIKEIGYTRAKYGFDAETCAVLTAIDEQSPDIAQGVDEALESRSGSEIDAAIEAIGAGDQGLMFGFATDETEELMPLPIFLAHGLARKLTELRKTKKLDYLRPDAKTQVTVEYDELN---QPVRIDTIVVSTQHHPDITQEEIAKDL 217          
BLAST of DR403988 vs. ExPASy Swiss-Prot
Match: METK_CLOBK (S-adenosylmethionine synthetase OS=Clostridium botulinum (strain Okra / Type B1) GN=metK PE=3 SV=1)

HSP 1 Score: 221.861 bits (564), Expect = 2.913e-57
Identity = 116/213 (54.46%), Postives = 145/213 (68.08%), Query Frame = 1
Query:  115 LFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRP------EDIGAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTVEYYNDNGAMVPVRVHTVLISTQHDETVTNDEIAADLK 735
            LFTSESV EGHPDK+CDQISDAVLDA L++DP  +VACET   T MVMV GEI+TK  VD  K+VR+T R IG+     G D + C V+ +I++QS DIA GV      +       + +GAGDQG MFG+AT+ET E+MP+   +A KL  RL+EVRKN T  +LRPDGKTQVTVEY N      PVR+  ++ISTQH   V  ++I  D+K
Sbjct:    4 LFTSESVTEGHPDKICDQISDAVLDAILDKDPNGRVACETAVTTGMVMVMGEISTKCYVDIPKLVRETIRGIGYDRAKYGFDCETCSVITSIDEQSVDIAIGVDEALESKKGEMDKLDAVGAGDQGMMFGFATNETKEYMPMPIEMAHKLSRRLSEVRKNGTLPYLRPDGKTQVTVEYENGK----PVRIDAIVISTQHGPEVYLEQIEKDIK 212          
BLAST of DR403988 vs. ExPASy Swiss-Prot
Match: METK_BACHD (S-adenosylmethionine synthetase OS=Bacillus halodurans GN=metK PE=3 SV=1)

HSP 1 Score: 221.861 bits (564), Expect = 2.913e-57
Identity = 117/215 (54.42%), Postives = 148/215 (68.84%), Query Frame = 1
Query:  115 LFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRP--------EDIGAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTVEYYNDNGAMVPVRVHTVLISTQHDETVTNDEIAADLK 735
            LFTSESV EGHPDK+CDQISD++LD  L++DP ++VACET   T +V+V GEITT   VD  K+VRDT R+IG+     G D++ C VL +I++QSPDIAQGV+     R         E IGAGDQG MFGYA +ET E MPL   L+ KL  RL+E RK     +LRPDGKTQVTVEY  ++ +   VR+ T++ISTQH   VT ++I +DLK
Sbjct:    9 LFTSESVTEGHPDKICDQISDSILDEILKEDPNARVACETSVTTGLVLVAGEITTSTYVDIPKVVRDTIRNIGYTRAKYGFDSETCAVLTSIDEQSPDIAQGVNQALEAREGQMTDAEIEAIGAGDQGLMFGYANNETPELMPLPISLSHKLARRLSEARKGEILPYLRPDGKTQVTVEYDENDQS---VRIDTIVISTQHHPEVTLEQIESDLK 220          
BLAST of DR403988 vs. ExPASy Swiss-Prot
Match: METK_LISMO (S-adenosylmethionine synthetase OS=Listeria monocytogenes GN=metK PE=3 SV=1)

HSP 1 Score: 221.476 bits (563), Expect = 3.804e-57
Identity = 117/214 (54.67%), Postives = 145/214 (67.76%), Query Frame = 1
Query:  115 LFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRP--------EDIGAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTVEYYNDNGAMVPVRVHTVLISTQHDETVTNDEIAADL 732
            LFTSESV++GHPDK+ DQISDA+LDA + +DP+++VACET   T +V+V GEITT   VD  KIVRDT + IG+     G DA+ C VL  I++QSPDIAQGV      R         E IGAGDQG MFG+ATDET E MPL   LA  L  +LTE+RK +   +LRPD KTQVTVEY   N    PVR+ T+++STQH   +T ++IA DL
Sbjct:    7 LFTSESVSDGHPDKIADQISDAILDAIISKDPDARVACETTVTTGLVLVAGEITTSVYVDIPKIVRDTIKEIGYTRAKYGFDAETCAVLTAIDEQSPDIAQGVDEALESRSGNEIDAAIEAIGAGDQGLMFGFATDETEELMPLPIFLAHGLARKLTELRKTNKLDYLRPDAKTQVTVEYDEFN---QPVRIDTIVVSTQHHPDITQEQIAKDL 217          
The following BLAST results are available for this feature:
BLAST of DR403988 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
METK_CARHZ1.001e-5756.07S-adenosylmethionine synthetase OS=Carboxydothermu... [more]
METK_THETN1.308e-5755.14S-adenosylmethionine synthetase OS=Thermoanaerobac... [more]
METK_CLOBM1.308e-5754.46S-adenosylmethionine synthetase OS=Clostridium bot... [more]
METK_CLOBH1.308e-5754.46S-adenosylmethionine synthetase OS=Clostridium bot... [more]
METK_CLOB11.308e-5754.46S-adenosylmethionine synthetase OS=Clostridium bot... [more]
METK_CLOBJ1.708e-5753.99S-adenosylmethionine synthetase OS=Clostridium bot... [more]
METK_LISW62.913e-5755.14S-adenosylmethionine synthetase OS=Listeria welshi... [more]
METK_CLOBK2.913e-5754.46S-adenosylmethionine synthetase OS=Clostridium bot... [more]
METK_BACHD2.913e-5754.42S-adenosylmethionine synthetase OS=Bacillus halodu... [more]
METK_LISMO3.804e-5754.67S-adenosylmethionine synthetase OS=Listeria monocy... [more]

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Properties
Property NameValue
Genbank descriptionCSAH-PNP1246O17 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone CSAH-PNP1246O17 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403988 ID=DR403988; Name=DR403988; organism=Citrus sinensis; type=EST; length=736bp
GGGGGCCCAAACTCAATTGAGTTCCGCTTTGCTATTGAGGTCTGGTCTTA
AGTCTGAATCTTAGATCTGCGCCGAAACACTTGCCAGCCACAGCTTGATA
AGATGGAGACCTTTCTATTCACCTCTGAATCTGTGAACGAGGGTCACCCC
GACAAGTTGTGCGACCAGATCTCTGATGCGGTGCTTGACGCCTGCCTTGA
GCAGGATCCTGAGAGCAAGGTTGCCTGTGAGACATGCACCAAGACCAACA
TGGTCATGGTCTTTGGAGAGATTACCACCAAGGCCAAGGTAGACTATGAG
AAGATTGTTCGCGACACTTGCCGTTCCATTGGATTTGTTTCTGATGATGT
GGGTCTTGACGCCGATCACTGCAAAGTCCTGGTCAATATTGAGCAACAAA
GCCCGGATATTGCCCAGGGTGTTCATGGCCACTTTACAAAGCGCCCTGAG
GACATTGGTGCTGGTGACCAGGGCCATATGTTTGGTTATGCTACTGATGA
GACCTCTGAATTTATGCCTTTGAGCCATGTCCTTGCCACCAAACTTGGTG
CTCGTCTCACGGAGGTTAGGAAGAATAGTACCTGCTCTTGGCTAAGGCCC
GATGGGAAGACCCAGGTCACTGTTGAGTACTACAACGACAATGGTGCCAT
GGTCCCAGTCCGTGTCCACACGGTCCTCATTTCAACCCAGCATGATGAGA
CTGTCACAAATGATGAAATTGCTGCTGACCTTAAGG
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