DR403988

Overview
NameDR403988
Unique NameDR403988
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length736
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1234 contig Csv1_Contig1234:147..881. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR403988 vs. ExPASy Swiss-Prot
Match: METK_OCEIH (S-adenosylmethionine synthetase OS=Oceanobacillus iheyensis GN=metK PE=3 SV=1)

HSP 1 Score: 201.83 bits (512), Expect = 3.119e-51
Identity = 108/214 (50.47%), Postives = 138/214 (64.49%), Query Frame = 1
Query:  115 LFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRP--------EDIGAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTVEYYNDNGAMVPVRVHTVLISTQHDETVTNDEIAADL 732
            LFTSESV EGHPDK+ DQISDA+LD  L++DP ++VACET   T +V+V GEI+T   VD   +VR+T + IG+     G D + C VL  I++QS DIA GV+     R         + IGAGDQG MFGYA DET E MPL   LA +L  RL +VRK     +LRPDGKTQVTVEY  ++    P R+ T++ISTQH   + N++I  D+
Sbjct:    7 LFTSESVTEGHPDKMSDQISDAILDEILKKDPNARVACETTVTTGLVLVSGEISTSTYVDIPALVRETVKEIGYTRAKYGFDFETCAVLTAIDEQSADIAGGVNQALEARQGKMSEEEIDAIGAGDQGLMFGYACDETEELMPLPISLAHQLSKRLADVRKEGIVDYLRPDGKTQVTVEYDEND---KPERIDTIVISTQHHSEIQNEQIERDM 217          
BLAST of DR403988 vs. ExPASy Swiss-Prot
Match: METK_NITMU (S-adenosylmethionine synthetase OS=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) GN=metK PE=3 SV=1)

HSP 1 Score: 201.83 bits (512), Expect = 3.119e-51
Identity = 104/208 (50.00%), Postives = 141/208 (67.79%), Query Frame = 1
Query:  103 METFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPE-DIGAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTVEYYNDNGAMVPVRVHTVLISTQHDETVTNDEIA 723
            M  +LFTSESV+EGHPDK+ DQISD++LDA L QDP ++VACET   T ++++ GEITT+A VDY ++ R   + IG+ S D+G D + C VL    +QSPDIA+GV+   TK  E D GAGDQG MFGYA DET + MP+    A +L  R  E+RK+    WLRPD K+QV+V Y +      P R+ TV+ISTQH   +++ +++
Sbjct:    1 MSEYLFTSESVSEGHPDKVADQISDSILDAILAQDPNARVACETLCSTGLIVMSGEITTQANVDYMQVARAAVKRIGYNSSDIGFDYNTCAVLTAFNKQSPDIARGVNR--TKEEEMDQGAGDQGLMFGYACDETPQLMPMPIYYAHRLMERQAELRKDGRLPWLRPDAKSQVSVRYLDGK----PQRIETVVISTQHHPDISHTDLS 202          
BLAST of DR403988 vs. ExPASy Swiss-Prot
Match: METK_BIFAA (S-adenosylmethionine synthetase OS=Bifidobacterium adolescentis (strain ATCC 15703 / DSM 20083) GN=metK PE=3 SV=1)

HSP 1 Score: 201.83 bits (512), Expect = 3.119e-51
Identity = 112/209 (53.59%), Postives = 134/209 (64.11%), Query Frame = 1
Query:  106 ETFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGV---------HGHFTKRPEDIGAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTVEYYNDNGAMVPVRVHTVLISTQHDETV 705
            E  L ++ESV EGHPDK+CDQISDA+LD  L QDP S VA ETC       VFGE+T++   D + IVR   R+IG+ S  VGLDAD C V V++ +QSP+I QGV              +R E  GAGDQG MFGYA DET   MPL   LA +L  RL EVRK+     LRPDGKTQVT+EY +D+    PVR+ TVL+STQHD  V
Sbjct:    3 ELKLISAESVTEGHPDKVCDQISDAILDDMLAQDPHSHVAVETCATVGQFFVFGEVTSEGYSDIQNIVRSVVRNIGYTSSRVGLDADSCGVTVSLTEQSPEINQGVARLSGEEESKASREQRYEAQGAGDQGVMFGYACDETDVLMPLPIHLAHRLAYRLAEVRKSGEVPHLRPDGKTQVTIEYDDDDH---PVRLDTVLVSTQHDPEV 208          
BLAST of DR403988 vs. ExPASy Swiss-Prot
Match: METK_SYNY3 (S-adenosylmethionine synthetase OS=Synechocystis sp. (strain PCC 6803) GN=metK PE=3 SV=2)

HSP 1 Score: 201.445 bits (511), Expect = 4.074e-51
Identity = 106/219 (48.40%), Postives = 145/219 (66.21%), Query Frame = 1
Query:  112 FLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGV-------HGHFTKRPEDIGAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTVEYYNDNGAMVPVRVHTVLISTQHDETV----TNDEIAADLK 735
            +LFTSESV EGHPDK+CDQISD +LDA L  DP S+VA ET   T + +V GEIT++A +++ +++R     IG+ + D G  A+ C V++ I++QSPDI+QGV       H       + IGAGDQG MFGYA +ET E MPL   LA ++  RL+EVRK+   ++LRPDGKTQV++ Y + +    PV + T+LISTQHDE +     ND + A +K
Sbjct:   11 YLFTSESVTEGHPDKVCDQISDTILDALLTLDPNSRVAAETVVNTGLTLVTGEITSQAHINFVELIRQKIAEIGYTNADNGYSANSCAVMLAIDEQSPDISQGVTAAQEQRHALSDDELDKIGAGDQGLMFGYACNETPELMPLPISLAHRIALRLSEVRKSGQLAYLRPDGKTQVSILYEDGS----PVAIDTILISTQHDEHIGDITDNDAVQAKIK 225          
BLAST of DR403988 vs. ExPASy Swiss-Prot
Match: METK_RHOE4 (S-adenosylmethionine synthetase OS=Rhodococcus erythropolis (strain PR4 / NBRC 100887) GN=metK PE=3 SV=1)

HSP 1 Score: 201.06 bits (510), Expect = 5.321e-51
Identity = 114/217 (52.53%), Postives = 135/217 (62.21%), Query Frame = 1
Query:   94 LDKMETFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEDI--------GAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTVEYYNDNGAMVPVRVHTVLISTQHDETVTNDEI 720
            + K  + LFTSESV EGHPDK+CD ISD++LDA L QDP ++VA ET   T  V V GE+TT A  D  KIVRDT   IG+ S   G D + C V V I  QSP+IAQGV      R + I        GAGDQG MFGYAT +T E MPL   LA +L  RLTEVRK+    +LRPDGKTQVT+EY  D      VR+ TV+ISTQH   +  D +
Sbjct:    1 MSKSGSRLFTSESVTEGHPDKICDAISDSILDALLTQDPRARVAVETLVTTGQVHVAGEVTTTAYADIPKIVRDTVLEIGYDSSAKGFDGNSCGVNVAIGAQSPEIAQGVDHSHEARVDGISDDEIDRQGAGDQGLMFGYATTDTPELMPLPIALAHRLSRRLTEVRKSGVLPYLRPDGKTQVTIEYDGDKA----VRLDTVVISTQHAADIDLDNL 213          
BLAST of DR403988 vs. ExPASy Swiss-Prot
Match: METK_NOSP7 (S-adenosylmethionine synthetase OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=metK PE=3 SV=1)

HSP 1 Score: 201.06 bits (510), Expect = 5.321e-51
Identity = 110/217 (50.69%), Postives = 139/217 (64.06%), Query Frame = 1
Query:  112 FLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPED-------IGAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTVEYYNDNGAMVPVRVHTVLISTQHDETV--TNDEIAADLK 735
            +LFTSESV EGHPDK+CDQISD +LDA L QDP S+VA E    T +V++ GEITTKA V++  + R     IG+ + D G  A+   VL+ +++QSPDIAQGV+     R +D       IGAGDQG MFG+A++ET E MPL   LA ++  RL  VRK    S+LRPDGKTQVTV Y +      PV + T+LISTQH  T+    DE A   K
Sbjct:    5 YLFTSESVTEGHPDKICDQISDTILDALLTQDPSSRVAAEVVVNTGLVLITGEITTKANVNFVNLARKKIAEIGYTNADNGFSANSTSVLLALDEQSPDIAQGVNTAQETRQQDSDELFDKIGAGDQGIMFGFASNETPELMPLPISLAHRIARRLAAVRKTGELSYLRPDGKTQVTVVYEDGR----PVGIDTILISTQHTATIGEITDEAAVQAK 217          
BLAST of DR403988 vs. ExPASy Swiss-Prot
Match: METK_NEIG2 (S-adenosylmethionine synthetase OS=Neisseria gonorrhoeae (strain NCCP11945) GN=metK PE=3 SV=1)

HSP 1 Score: 201.06 bits (510), Expect = 5.321e-51
Identity = 105/211 (49.76%), Postives = 145/211 (68.72%), Query Frame = 1
Query:  103 METFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEDI----GAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTVEYYNDNGAMVPVRVHTVLISTQHDETVTNDEIA 723
            M  +LFTSESV+EGHPDK+ DQ+SDA+LDA L QDP+++VA ET   T + ++ GEITT A+VDY K+ R+T + IG+ S ++G DA+ C V V  +QQSPDIAQGV+       E I    GAGDQG MFGYA DET   MP +   + +L  R +E+RK+    WLRPD K Q+TV Y ++ G +   R+ TV++STQHD  ++++E++
Sbjct:    1 MSEYLFTSESVSEGHPDKVADQVSDAILDAILAQDPKARVAAETLVNTGLCVLAGEITTTAQVDYIKVARETIKRIGYNSSELGFDANGCAVGVYYDQQSPDIAQGVN-----EGEGIDLNQGAGDQGLMFGYACDETPTLMPFAIYYSHRLMQRQSELRKDGRLPWLRPDAKAQLTVVYDSETGKV--KRIDTVVLSTQHDPAISHEELS 204          
BLAST of DR403988 vs. ExPASy Swiss-Prot
Match: METK_DESOH (S-adenosylmethionine synthetase OS=Desulfococcus oleovorans (strain DSM 6200 / Hxd3) GN=metK PE=3 SV=1)

HSP 1 Score: 201.06 bits (510), Expect = 5.321e-51
Identity = 109/207 (52.66%), Postives = 137/207 (66.18%), Query Frame = 1
Query:  109 TFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVH---GHFTKRPEDIGAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTVEYYNDNGAMVPVRVHTVLISTQHDETVTNDEI 720
            T LFTSESV EGHPDK+ D ISDAVLDA + QD   +VACET   T +  + GEIT  A V++  IVRDT R IG+ S D+G D   C V+ +I++QSPDIAQGV+   G F ++    GAGDQG MFG+A DET E MP     A KL  +L +VRKN    +LRPDGK+QVTV+Y +      P R+ T++IS+QH   VT DE+
Sbjct:    4 THLFTSESVTEGHPDKVADCISDAVLDALISQDKNCRVACETLVTTGVAFIAGEITANATVNFPDIVRDTIRRIGYTSSDMGFDWQTCSVVTSIDKQSPDIAQGVNEGDGLFKEQ----GAGDQGLMFGFACDETPELMPAPISYAHKLTKQLADVRKNGVLDFLRPDGKSQVTVQYEDGQ----PKRIDTIVISSQHSPDVTYDEL 202          
BLAST of DR403988 vs. ExPASy Swiss-Prot
Match: METK_STRGG (S-adenosylmethionine synthetase OS=Streptomyces griseus subsp. griseus (strain JCM 4626 / NBRC 13350) GN=metK PE=3 SV=1)

HSP 1 Score: 200.675 bits (509), Expect = 6.949e-51
Identity = 113/215 (52.56%), Postives = 135/215 (62.79%), Query Frame = 1
Query:  103 METFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPE-------DIGAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTVEYYNDNGAMVPVRVHTVLISTQHDETVTNDEIAA 726
            M   LFTSESV EGHPDK+ DQISD +LDA L +DP S+VA ET   T +V V GE+TTKA  D   +VR+    IG+ S   G D   C V V+I  QSPDIAQGV   + KR E         GAGDQG MFGYA DET E MPL   +A +L  RL+EVRKN T  +LRPDGKTQVT+EY  D      VR+ TV++S+QH   +  D + A
Sbjct:    1 MSRRLFTSESVTEGHPDKIADQISDTILDALLREDPTSRVAVETLITTGLVHVAGEVTTKAYADIPNLVRNKVLEIGYDSSKKGFDGASCGVSVSIGAQSPDIAQGVDTAYEKRVEGDEDELDKQGAGDQGLMFGYACDETPELMPLPIHVAHRLSRRLSEVRKNGTIPYLRPDGKTQVTIEYDGDKA----VRLDTVVVSSQHASDIDLDSLLA 211          
BLAST of DR403988 vs. ExPASy Swiss-Prot
Match: METK_SHESR (S-adenosylmethionine synthetase OS=Shewanella sp. (strain MR-7) GN=metK PE=3 SV=1)

HSP 1 Score: 200.675 bits (509), Expect = 6.949e-51
Identity = 110/206 (53.40%), Postives = 136/206 (66.02%), Query Frame = 1
Query:  103 METFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEDIGAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTVEYYNDNGAMVPVRVHTVLISTQHDETVTNDEI 720
            M   LFTSESV+EGHPDK+ DQISDAVLDA L QDP+++VACET  KT MV+V GE+TT A VD E++ R T R IG+V  D+G DAD C VL  I +QSPDI QGV       P++ GAGDQG MFGYA++ET   MP     A  L  R +EVRK+ T  WLRPD K+QVT   Y DN     V +  +++STQH   +   ++
Sbjct:    1 MAKHLFTSESVSEGHPDKIADQISDAVLDAILAQDPKARVACETYVKTGMVLVGGEVTTSAWVDIEELTRKTVREIGYVHSDMGFDADSCAVLNAIGKQSPDINQGVD---RADPKEQGAGDQGLMFGYASNETDILMPAPITYAHALVKRQSEVRKDGTLPWLRPDAKSQVTFA-YEDNKI---VGIDAIVLSTQHSPDIAQADL 199          
The following BLAST results are available for this feature:
BLAST of DR403988 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
METK_OCEIH3.119e-5150.47S-adenosylmethionine synthetase OS=Oceanobacillus ... [more]
METK_NITMU3.119e-5150.00S-adenosylmethionine synthetase OS=Nitrosospira mu... [more]
METK_BIFAA3.119e-5153.59S-adenosylmethionine synthetase OS=Bifidobacterium... [more]
METK_SYNY34.074e-5148.40S-adenosylmethionine synthetase OS=Synechocystis s... [more]
METK_RHOE45.321e-5152.53S-adenosylmethionine synthetase OS=Rhodococcus ery... [more]
METK_NOSP75.321e-5150.69S-adenosylmethionine synthetase OS=Nostoc punctifo... [more]
METK_NEIG25.321e-5149.76S-adenosylmethionine synthetase OS=Neisseria gonor... [more]
METK_DESOH5.321e-5152.66S-adenosylmethionine synthetase OS=Desulfococcus o... [more]
METK_STRGG6.949e-5152.56S-adenosylmethionine synthetase OS=Streptomyces gr... [more]
METK_SHESR6.949e-5153.40S-adenosylmethionine synthetase OS=Shewanella sp. ... [more]

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Properties
Property NameValue
Genbank descriptionCSAH-PNP1246O17 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone CSAH-PNP1246O17 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403988 ID=DR403988; Name=DR403988; organism=Citrus sinensis; type=EST; length=736bp
GGGGGCCCAAACTCAATTGAGTTCCGCTTTGCTATTGAGGTCTGGTCTTA
AGTCTGAATCTTAGATCTGCGCCGAAACACTTGCCAGCCACAGCTTGATA
AGATGGAGACCTTTCTATTCACCTCTGAATCTGTGAACGAGGGTCACCCC
GACAAGTTGTGCGACCAGATCTCTGATGCGGTGCTTGACGCCTGCCTTGA
GCAGGATCCTGAGAGCAAGGTTGCCTGTGAGACATGCACCAAGACCAACA
TGGTCATGGTCTTTGGAGAGATTACCACCAAGGCCAAGGTAGACTATGAG
AAGATTGTTCGCGACACTTGCCGTTCCATTGGATTTGTTTCTGATGATGT
GGGTCTTGACGCCGATCACTGCAAAGTCCTGGTCAATATTGAGCAACAAA
GCCCGGATATTGCCCAGGGTGTTCATGGCCACTTTACAAAGCGCCCTGAG
GACATTGGTGCTGGTGACCAGGGCCATATGTTTGGTTATGCTACTGATGA
GACCTCTGAATTTATGCCTTTGAGCCATGTCCTTGCCACCAAACTTGGTG
CTCGTCTCACGGAGGTTAGGAAGAATAGTACCTGCTCTTGGCTAAGGCCC
GATGGGAAGACCCAGGTCACTGTTGAGTACTACAACGACAATGGTGCCAT
GGTCCCAGTCCGTGTCCACACGGTCCTCATTTCAACCCAGCATGATGAGA
CTGTCACAAATGATGAAATTGCTGCTGACCTTAAGG
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