CX069699

Overview
NameCX069699
Unique NameCX069699
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length840
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX069699 vs. ExPASy Swiss-Prot
Match: THSB_PYRKO (Thermosome subunit beta OS=Pyrococcus kodakaraensis GN=thsB PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 6.912e-24
Identity = 67/200 (33.50%), Postives = 109/200 (54.50%), Query Frame = 3
Query:    3 FIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWLFRRFCYSSA*HPCFIIVKQWPYEAAAIAFEAIPRTLAQNCGVNVIRTMTALQGKHANGENAWIGIDGNTGAISDMKEGKIWDAYNVKAQTFKTAIEAACMLLRIDDIVSGIKKKQAPGSGQAPSK 602
            F+  CK+PKA T+L+RG ++ +++EVER L+DA+ V ++I+++ K+V  GGA E+ ++  L + +  + G E                     Q   EA A A + IPRTLA+N G++ I T+  +   H   +   IG+D   G  +DM E  +     V  Q  K+A EAA M+LRIDD+++  K ++    G+  S+
Sbjct:  362 FVEGCKNPKAVTILIRGGTEHVVDEVERALEDAVKVVKDIVEDGKIVAAGGAPEIELAIRLDEYAKEVGGKE---------------------QLAIEAFAEALKVIPRTLAENAGLDPIETLVKVIAAHKE-KGPTIGVDVFEGEPADMLERGVIAPVRVPKQAIKSASEAAIMILRIDDVIAASKLEKDKEGGKGGSE 539          
BLAST of CX069699 vs. ExPASy Swiss-Prot
Match: THS_METJA (Thermosome subunit OS=Methanocaldococcus jannaschii GN=ths PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.540e-23
Identity = 65/196 (33.16%), Postives = 102/196 (52.04%), Query Frame = 3
Query:    3 FIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWLFRRFCYSSA*HPCFIIVKQWPYEAAAIAFEAIPRTLAQNCGVNVIRTMTALQGKHANGENAWIGIDGNTGAISDMKEGKIWDAYNVKAQTFKTAIEAACMLLRIDDIVSGIKKKQAPGSGQ 590
            F+  CK PKA T+L RG+++ ++ EV R + DA+ V +  ++  K+V GGGATE+ ++  L++ + S+ G E+   + F                     A A E IPRTLA+N G++ I  +  L+  H        G+D   G + DM E  + +   VK Q   +A EA+ MLLRIDD+++  K K     G+
Sbjct:  359 FVEQCKHPKAVTILARGSTEHVVEEVARAIDDAIGVVKCALEEGKIVAGGGATEIELAKRLRKFAESVAGREQLAVKAF---------------------ADALEVIPRTLAENSGLDPIDMLVKLRAAHEKEGGEVYGLDVFEGEVVDMLEKGVVEPLKVKTQAIDSATEASVMLLRIDDVIAAEKVKGDEKGGE 533          
BLAST of CX069699 vs. ExPASy Swiss-Prot
Match: THSA_AERPE (Thermosome subunit alpha OS=Aeropyrum pernix GN=thsA PE=3 SV=2)

HSP 1 Score: 108.997 bits (271), Expect = 3.431e-23
Identity = 67/205 (32.68%), Postives = 111/205 (54.15%), Query Frame = 3
Query:    3 FIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWLFRRFCYSSA*HPCFIIVKQWPYEAAAIAFEAIPRTLAQNCGVNVIRTMTALQGKHANGENAWIGIDGNTGAI-SDMKEGKIWDAYNVKAQTFKTAIEAACMLLRIDDIVSGIKKKQAPGSGQAPSKPQIE 614
            FI   K+PK+ T+LLRGA+  LL+E ERN++DA+   RNI++ PK+V GGGA E+ ++  LK+ + ++ G                      +Q   EA A A E IP  LA++ G++ +  +  L+  H+ G   + G++   G I  DM +  +++   VK Q  K+A EAA  +L+IDD+++    K+    G+   + + E
Sbjct:  364 FIEGAKNPKSVTILLRGANDMLLDEAERNIKDALHGLRNILREPKIVGGGGAVEVELALKLKEFARTVGG---------------------KQQLAIEAYAEALETIPTVLAESAGMDALEALLKLRSLHSQGYK-FAGVNVLEGKIEEDMTKINVYEPVLVKKQVIKSASEAAISILKIDDVIAAAPPKKKEKKGKTGEEEEEE 546          
BLAST of CX069699 vs. ExPASy Swiss-Prot
Match: TCPH_CHICK (T-complex protein 1 subunit eta OS=Gallus gallus GN=CCT7 PE=1 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 3.431e-23
Identity = 64/203 (31.53%), Postives = 96/203 (47.29%), Query Frame = 3
Query:    3 FIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWLFRRFCYSSA*HPCFIIVKQWPYEAAAIAFEAIPRTLAQNCGVNVIRTMTALQGKHANGENAWIGIDGNTGAISDMKEGKIWDAYNVKAQTFKTAIEAACMLLRIDDIVSGIKKK-QAPGSGQAPSKPQ 608
            F   C   K CT++LRG ++  + E ER+L DA+ + R  IKN  +V GGGA E+ +S  L+  S +I G ++ L                       A A A E IPR L  N G +    +  L+ KHA G   W G+D N   I+D  E  +W+   V+      A EAAC+++ +D+ +   +    AP  G+   + Q
Sbjct:  360 FFTGCPKAKTCTIILRGGAEQFMEETERSLHDAIMIVRRAIKNDSVVAGGGAIEMELSKYLRDYSRTIPGKQQLLI---------------------GAYAKALEIIPRQLCDNAGFDATNILNKLRAKHAQG-GMWYGVDVNNEDIADNFEACVWEPAIVRINALTAASEAACLIVSVDETIKNPRSTVDAPPGGRGRGRGQ 540          
BLAST of CX069699 vs. ExPASy Swiss-Prot
Match: TCPH_BOVIN (T-complex protein 1 subunit eta OS=Bos taurus GN=CCT7 PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 4.480e-23
Identity = 64/200 (32.00%), Postives = 96/200 (48.00%), Query Frame = 3
Query:    3 FIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWLFRRFCYSSA*HPCFIIVKQWPYEAAAIAFEAIPRTLAQNCGVNVIRTMTALQGKHANGENAWIGIDGNTGAISDMKEGKIWDAYNVKAQTFKTAIEAACMLLRIDDIV----SGIKKKQAPGSGQ 590
            F   C   K CT++LRG ++  + E ER+L DA+ + R  IKN  +V GGGA E+ +S  L+  S +I G ++ L                       A A A E IPR L  N G +    +  L+ +HA G   W G+D NT  I+D  E  +W+   V+      A EAAC+++ +D+ +    S +    A G G+
Sbjct:  360 FFTGCPKAKTCTIILRGGAEQFMEETERSLHDAIMIVRRAIKNDSVVAGGGAIEMELSKYLRDYSRTIPGKQQLLI---------------------GAYAKALEIIPRQLCDNAGFDATNILNKLRARHAQG-GMWYGVDINTEDIADNFEAFVWEPAMVRINALTAASEAACLIVSVDETIKNPRSTVDASPAAGRGR 537          
BLAST of CX069699 vs. ExPASy Swiss-Prot
Match: TCPH_PONAB (T-complex protein 1 subunit eta OS=Pongo abelii GN=CCT7 PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 7.643e-23
Identity = 64/205 (31.22%), Postives = 96/205 (46.83%), Query Frame = 3
Query:    3 FIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWLFRRFCYSSA*HPCFIIVKQWPYEAAAIAFEAIPRTLAQNCGVNVIRTMTALQGKHANGENAWIGIDGNTGAISDMKEGKIWDAYNVKAQTFKTAIEAACMLLRIDDIV----SGIKKKQAPGSGQAPSKP 605
            F   C   K CT +LRG ++  + E ER+L DA+ + R  IKN  +V GGGA E+ +S  L+  S +I G ++ L                       A A A E IPR L  N G +    +  L+ +HA G   W G+D N   I+D  E  +W+   V+      A EAAC+++ +D+ +    S +    A G G+   +P
Sbjct:  360 FFTGCPKAKTCTFILRGGAEQFMEETERSLHDAIMIVRRAIKNDSVVAGGGAIEMELSKYLRDYSRTIPGKQQLLI---------------------GAYAKALEIIPRQLCDNAGFDATNILNKLRARHAQG-GTWYGVDINNEDIADNFEAFVWEPAMVRINALTAASEAACLIVSVDETIKNPRSTVDAPAAAGRGRGRGRP 542          
BLAST of CX069699 vs. ExPASy Swiss-Prot
Match: TCPH_HUMAN (T-complex protein 1 subunit eta OS=Homo sapiens GN=CCT7 PE=1 SV=2)

HSP 1 Score: 107.842 bits (268), Expect = 7.643e-23
Identity = 64/205 (31.22%), Postives = 96/205 (46.83%), Query Frame = 3
Query:    3 FIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWLFRRFCYSSA*HPCFIIVKQWPYEAAAIAFEAIPRTLAQNCGVNVIRTMTALQGKHANGENAWIGIDGNTGAISDMKEGKIWDAYNVKAQTFKTAIEAACMLLRIDDIV----SGIKKKQAPGSGQAPSKP 605
            F   C   K CT +LRG ++  + E ER+L DA+ + R  IKN  +V GGGA E+ +S  L+  S +I G ++ L                       A A A E IPR L  N G +    +  L+ +HA G   W G+D N   I+D  E  +W+   V+      A EAAC+++ +D+ +    S +    A G G+   +P
Sbjct:  360 FFTGCPKAKTCTFILRGGAEQFMEETERSLHDAIMIVRRAIKNDSVVAGGGAIEMELSKYLRDYSRTIPGKQQLLI---------------------GAYAKALEIIPRQLCDNAGFDATNILNKLRARHAQG-GTWYGVDINNEDIADNFEAFVWEPAMVRINALTAASEAACLIVSVDETIKNPRSTVDAPTAAGRGRGRGRP 542          
BLAST of CX069699 vs. ExPASy Swiss-Prot
Match: THSA_SULTO (Thermosome subunit alpha OS=Sulfolobus tokodaii GN=thsA PE=1 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.703e-22
Identity = 68/198 (34.34%), Postives = 104/198 (52.53%), Query Frame = 3
Query:    3 FIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWLFRRFCYSSA*HPCFIIVKQWPYEAAAIAFEAIPRTLAQNCGVNVIRTMTALQGKHANG-ENAWIGIDGNTGAIS-DMKEGKIWDAYNVKAQTFKTAIEAACMLLRIDDIVSGIKKKQAPGSGQ 590
            FI   K+PKA  +LLRG++   L+E ER++ DA+   RN++  P +V GGGA E  ++  L++ + S+ G E+    +F                     A A E IP  LA+  G+  I+T+  L+ KHA G  NA  G+D   G I+ DM    + +   VKAQ  K+A+EAA  +L+IDD+++    K     G+
Sbjct:  368 FIEGAKNPKAVNILLRGSNDMALDEAERSINDALHSLRNVLMKPMIVAGGGAVETELALRLREYARSVGGKEQLAIEKF---------------------AEALEEIPMILAETAGMEPIQTLMDLRAKHAKGLINA--GVDVMNGKIADDMLALNVLEPVRVKAQVLKSAVEAATAILKIDDLIAAAPLKSGEKKGE 542          
BLAST of CX069699 vs. ExPASy Swiss-Prot
Match: THSA_HALSA (Thermosome subunit alpha OS=Halobacterium salinarium GN=thsA PE=3 SV=2)

HSP 1 Score: 106.301 bits (264), Expect = 2.224e-22
Identity = 61/184 (33.15%), Postives = 104/184 (56.52%), Query Frame = 3
Query:    3 FIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWLFRRFCYSSA*HPCFIIVKQWPYEAAAIAFEAIPRTLAQNCGVNVIRTMTALQGKHANGENAWIGIDGNTGAISDMKEGKIWDAYNVKAQTFKTAIEAACMLLRIDDIVS 554
            F+ D ++ K+ T++LRG ++ +++EVER ++D++ V R  +++ +++PGGGA E  ++  L+  + S+ G E                     Q   EA A A E IPRTLA+N G + I ++  L+ +H  G+    G+D   G + DM+   I +   VK Q  ++A EAA M+LRIDD+++
Sbjct:  359 FVEDVEEAKSVTLILRGGTEHVVDEVERAIEDSLGVVRVTLEDGQVMPGGGAPETELAMQLRDFADSVGGRE---------------------QLAVEAFADALEVIPRTLAENAGHDPIDSLVDLRSQHDGGDTE-AGLDAYNGDVIDMESEGIVEPLRVKTQAIESATEAATMILRIDDVIA 520          
BLAST of CX069699 vs. ExPASy Swiss-Prot
Match: TCPH_MOUSE (T-complex protein 1 subunit eta OS=Mus musculus GN=Cct7 PE=1 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.904e-22
Identity = 63/204 (30.88%), Postives = 95/204 (46.57%), Query Frame = 3
Query:    3 FIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWLFRRFCYSSA*HPCFIIVKQWPYEAAAIAFEAIPRTLAQNCGVNVIRTMTALQGKHANGENAWIGIDGNTGAISDMKEGKIWDAYNVKAQTFKTAIEAACMLLRIDDIVSGIKKKQAP-------GSGQA 593
            F   C   K CT++LRG ++  + E ER+L DA+ + R  IKN  +V GGGA E+ +S  L+  S +I G ++ L                       A A A E IPR L  N G +    +  L+ +HA G   W G+D N   I+D  +  +W+   V+      A EAAC+++ +D+ +   +    P       G GQA
Sbjct:  360 FFTGCPKAKTCTIILRGGAEQFMEETERSLHDAIMIVRRAIKNDSVVAGGGAIEMELSKYLRDYSRTIPGKQQLLI---------------------GAYAKALEIIPRQLCDNAGFDATNILNKLRARHAQG-GMWYGVDINNENIADNFQAFVWEPAMVRINALTAASEAACLIVSVDETIKNPRSTVDPPAPSAGRGRGQA 541          
The following BLAST results are available for this feature:
BLAST of CX069699 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 142
Match NameE-valueIdentityDescription
THSB_PYRKO6.912e-2433.50Thermosome subunit beta OS=Pyrococcus kodakaraensi... [more]
THS_METJA1.540e-2333.16Thermosome subunit OS=Methanocaldococcus jannaschi... [more]
THSA_AERPE3.431e-2332.68Thermosome subunit alpha OS=Aeropyrum pernix GN=th... [more]
TCPH_CHICK3.431e-2331.53T-complex protein 1 subunit eta OS=Gallus gallus G... [more]
TCPH_BOVIN4.480e-2332.00T-complex protein 1 subunit eta OS=Bos taurus GN=C... [more]
TCPH_PONAB7.643e-2331.22T-complex protein 1 subunit eta OS=Pongo abelii GN... [more]
TCPH_HUMAN7.643e-2331.22T-complex protein 1 subunit eta OS=Homo sapiens GN... [more]
THSA_SULTO1.703e-2234.34Thermosome subunit alpha OS=Sulfolobus tokodaii GN... [more]
THSA_HALSA2.224e-2233.15Thermosome subunit alpha OS=Halobacterium salinari... [more]
TCPH_MOUSE2.904e-2230.88T-complex protein 1 subunit eta OS=Mus musculus GN... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS08_12C05_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-12C05-F10-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069699 ID=CX069699; Name=CX069699; organism=Citrus sinensis; type=EST; length=840bp
CATTCATTGTTGATTGCAAAGATCCAAAAGCTTGTACTGTACTCTTAAGA
GGTGCTAGTAAGGATCTCCTGAATGAAGTGGAAAGGAATTTGCAGGATGC
AATGTCTGTGGCAAGAAACATAATCAAGAATCCAAAACTAGTACCTGGTG
GTGGGGCTACAGAATTAACAGTGTCTGCCACTCTAAAACAAAAGAGTTCC
TCAATCGAAGGCATCGAAAAGTGGCTTTTCCGCCGTTTTTGTTATTCATC
AGCCTGACATCCATGCTTCATCATTGTAAAACAGTGGCCTTACGAAGCTG
CTGCTATTGCTTTTGAGGCTATTCCAAGAACTTTGGCTCAGAATTGTGGC
GTTAATGTAATTCGGACTATGACTGCTCTGCAAGGAAAACATGCAAATGG
TGAAAATGCATGGATCGGCATAGATGGAAACACTGGTGCAATTTCTGACA
TGAAAGAGGGGAAGATCTGGGATGCATATAATGTGAAAGCACAGACATTT
AAGACAGCAATTGAAGCTGCTTGCATGCTTCTGAGGATTGATGACATTGT
CAGTGGAATTAAGAAGAAACAGGCCCCTGGCTCAGGCCAAGCTCCATCGA
AGCCCCAGATTGAGACGGAGGCAGATGCAGATAGTGAGCAAATACTCCCT
GATTAGACAATGTTATTGTCAACGACTATGCAGTTTAATTATTTGAAAAA
ATGTTGGTTTATTGTTCTGTTGGCGGTCTAATGATTTTGCTGAGCTTTTC
CTCCAAATTTTGTGATATTGCGCCAATGTTTTAGCCATTGTAGACAAACT
GGGAAGCTGTGATATGCTCTGCAATATATATATATATTTT
back to top