CX069699

Overview
NameCX069699
Unique NameCX069699
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length840
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX069699 vs. ExPASy Swiss-Prot
Match: TCPH_YEAST (T-complex protein 1 subunit eta OS=Saccharomyces cerevisiae GN=CCT7 PE=1 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 5.477e-21
Identity = 60/194 (30.93%), Postives = 96/194 (49.48%), Query Frame = 3
Query:   15 CKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWLFRRFCYSSA*HPCFIIVKQWPYEAAAIAFEAIPRTLAQNCGVNVIRTMTALQGKHANGENAWIGIDGNTGAISDMKEGKIWDAYNVKAQTFKTAIEAACMLLRIDDIVSGIKKKQAPGSGQAP 596
            C   K CT+LLRG ++ ++ EVER+L DA+ + +  ++N  +V GGGATE+ VS  L+  S +I G ++ +   F                     A A E IPR L +N G + I  +  L+  H+ GE  W G+   T  I D     +W+   VK     +A EA  ++L +D+ ++  K  ++  +G  P
Sbjct:  368 CPQAKTCTLLLRGGAEQVIAEVERSLHDAIMIVKRALQNKLIVAGGGATEMEVSKCLRDYSKTIAGKQQMIINAF---------------------AKALEVIPRQLCENAGFDAIEILNKLRLAHSKGEK-WYGVVFETENIGDNFAKFVWEPALVKINALNSATEATNLILSVDETITN-KGSESANAGMMP 538          
BLAST of CX069699 vs. ExPASy Swiss-Prot
Match: TCPD_BOVIN (T-complex protein 1 subunit delta OS=Bos taurus GN=CCT4 PE=2 SV=3)

HSP 1 Score: 101.293 bits (251), Expect = 7.153e-21
Identity = 61/184 (33.15%), Postives = 96/184 (52.17%), Query Frame = 3
Query:    6 IVDCKDP-KACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWLFRRFCYSSA*HPCFIIVKQWPYEAAAIAFEAIPRTLAQNCGVNVIRTMTALQGKHANGENAWIGIDGNTGAISDMKEGKIWDAYNVKAQTFKTAIEAACMLLRIDDIVS 554
            I  C  P K  T+++RG++K ++ E ER++ DA+ V R ++K   L+ GGGA E+ ++  L + S ++ G+E +  R F                     A A E IP TLA+N G+N I T+T L+ +HA GE    GI+   G IS++ E ++     V       A E    +L+IDD+V+
Sbjct:  379 ITGCASPGKTVTIVVRGSNKLVIEEAERSIHDALCVIRCLVKKRALIAGGGAPEIELALRLTEYSRTLSGMESYCIRAF---------------------ADAMEVIPSTLAENAGLNPISTVTELRNRHAQGEKT-TGINVRKGGISNILEEQVVQPLLVSVSALTLATETVRSILKIDDVVN 540          
BLAST of CX069699 vs. ExPASy Swiss-Prot
Match: THSB_SULAC (Thermosome subunit beta OS=Sulfolobus acidocaldarius GN=thsB PE=3 SV=2)

HSP 1 Score: 100.523 bits (249), Expect = 1.220e-20
Identity = 63/210 (30.00%), Postives = 104/210 (49.52%), Query Frame = 3
Query:    3 FIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWLFRRFCYSSA*HPCFIIVKQWPYEAAAIAFEAIPRTLAQNCGVNVIRTMTALQGKHANGENAWIGIDGNTGAISDMKEGKIWDAYNVKAQTFKTAIEAACMLLRIDDIVSGIKKKQAPGSGQAPSKPQIETEADAD 632
            FI   K+PKA ++L+RG  + +++E ER L+DA+    +++++ + + GGGA E  ++  L++ +  + G E                     Q   EA A A E++   L +N G + I  +  L+  H N  N W GI+  TG I DM    + +   VK    K A EA+ ++LRIDD++S  KK +    G+   K + E   + D
Sbjct:  369 FIEGAKNPKAVSILIRGGLERVVDETERALRDALGTVADVVRDGRAIAGGGAVETEIAKRLRKYAPQVGGKE---------------------QLAIEAYANALESLVMILIENGGFDPIELLVKLRSAHENETNKWHGINVYTGQIQDMWSLGVIEPAVVKMNAIKAATEASTLILRIDDLISAGKKSE----GKTGEKKESEKGKEED 553          
BLAST of CX069699 vs. ExPASy Swiss-Prot
Match: THSA_SULSH (Thermosome subunit alpha OS=Sulfolobus shibatae GN=thsA PE=1 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.220e-20
Identity = 69/215 (32.09%), Postives = 106/215 (49.30%), Query Frame = 3
Query:    3 FIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWLFRRFCYSSA*HPCFIIVKQWPYEAAAIAFEAIPRTLAQNCGVNVIRTMTALQGKHANG-ENAWIGIDGNTGAISDMKEGKIWDAYNVKAQTFKTAIEAACMLLRIDDIVSGIKKKQAPGSGQAPSKPQIETEADADSEQI 644
            FI   K+ KA  +LLRG++   L+E ER++ DA+   RNI+  P ++PGGGA EL ++  L++ + S+ G E                     Q   EA A A E IP  LA+  G+  I  +  L+ +HA G  N  + + G    + D+    I +   VKAQ  K+A EAA  +L+IDD+++    K     G+  SK +   E  A +  +
Sbjct:  367 FIEGAKNLKAVNILLRGSNDMALDEAERSINDALHALRNILLEPVILPGGGAIELELAMKLREYARSVGGKE---------------------QLAIEAFADALEEIPTILAETAGLEAISALMDLRARHAKGLTNTGVDVIGGK-IVDDVYALNIIEPIRVKAQVLKSATEAATAILKIDDLIAAAPLKSEKKGGEG-SKEESGGEGGAGTPSL 558          
BLAST of CX069699 vs. ExPASy Swiss-Prot
Match: TCPD_RAT (T-complex protein 1 subunit delta OS=Rattus norvegicus GN=Cct4 PE=1 SV=3)

HSP 1 Score: 100.138 bits (248), Expect = 1.594e-20
Identity = 61/184 (33.15%), Postives = 95/184 (51.63%), Query Frame = 3
Query:    6 IVDCKDP-KACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWLFRRFCYSSA*HPCFIIVKQWPYEAAAIAFEAIPRTLAQNCGVNVIRTMTALQGKHANGENAWIGIDGNTGAISDMKEGKIWDAYNVKAQTFKTAIEAACMLLRIDDIVS 554
            I  C  P K  T+++RG++K ++ E ER++ DA+ V R ++K   L+ GGGA E+ ++  L + S ++ G+E +  R F                     A A E IP TLA+N G+N I T+T L+ +HA GE    GI+   G IS++ E  +     V       A E    +L+IDD+V+
Sbjct:  376 ITGCTSPGKTVTIVVRGSNKLVIEEAERSIHDALCVIRCLVKKRALIAGGGAPEIELALRLTEYSRTLSGMESYCVRAF---------------------ADAMEVIPSTLAENAGLNPISTVTELRNRHAQGEKT-TGINVRKGGISNILEEMVVQPLLVSVSALTLATETVRSILKIDDVVN 537          
BLAST of CX069699 vs. ExPASy Swiss-Prot
Match: TCPD_MOUSE (T-complex protein 1 subunit delta OS=Mus musculus GN=Cct4 PE=1 SV=3)

HSP 1 Score: 100.138 bits (248), Expect = 1.594e-20
Identity = 61/184 (33.15%), Postives = 95/184 (51.63%), Query Frame = 3
Query:    6 IVDCKDP-KACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWLFRRFCYSSA*HPCFIIVKQWPYEAAAIAFEAIPRTLAQNCGVNVIRTMTALQGKHANGENAWIGIDGNTGAISDMKEGKIWDAYNVKAQTFKTAIEAACMLLRIDDIVS 554
            I  C  P K  T+++RG++K ++ E ER++ DA+ V R ++K   L+ GGGA E+ ++  L + S ++ G+E +  R F                     A A E IP TLA+N G+N I T+T L+ +HA GE    GI+   G IS++ E  +     V       A E    +L+IDD+V+
Sbjct:  376 ITGCTSPGKTVTIVVRGSNKLVIEEAERSIHDALCVIRCLVKKRALIAGGGAPEIELALRLTEYSRTLSGMESYCVRAF---------------------ADAMEVIPSTLAENAGLNPISTVTELRNRHAQGEKT-TGINVRKGGISNILEEMVVQPLLVSVSALTLATETVRSILKIDDVVN 537          
BLAST of CX069699 vs. ExPASy Swiss-Prot
Match: THSB_SULSO (Thermosome subunit beta OS=Sulfolobus solfataricus GN=thsB PE=3 SV=2)

HSP 1 Score: 99.7525 bits (247), Expect = 2.081e-20
Identity = 62/208 (29.81%), Postives = 105/208 (50.48%), Query Frame = 3
Query:    3 FIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWLFRRFCYSSA*HPCFIIVKQWPYEAAAIAFEAIPRTLAQNCGVNVIRTMTALQGKHANGENAWIGIDGNTGAISDMKEGKIWDAYNVKAQTFKTAIEAACMLLRIDDIVSGIKKKQAPGSGQAPSKPQIETEAD 626
            F+   K+PK+ ++L+RG  + +++E ER L+DA+    ++I++ + V GGGA E+ ++  L++ +  + G E                     Q   EA A A E +   LA+N G++ I  +  L+  H N  N W G++  TG   DM +  + +   VK    K A EA  ++LRIDDIV+  KK  +  SG+     + ++  D
Sbjct:  368 FVEGAKNPKSVSILIRGGLERVVDETERALRDALGTVADVIRDGRAVAGGGAVEIEIAKRLRKYAPQVGGKE---------------------QLAIEAYANAIEGLIMILAENAGLDPIDKLMQLRSLHENETNKWYGLNLFTGNPEDMWKLGVIEPALVKMNAVKAATEAVTLVLRIDDIVAAGKKSGSEPSGKKEKDKEEKSSED 554          
BLAST of CX069699 vs. ExPASy Swiss-Prot
Match: THSA_THEK8 (Thermosome subunit alpha OS=Thermococcus sp. (strain KS-8) GN=thsA PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 2.081e-20
Identity = 60/199 (30.15%), Postives = 106/199 (53.27%), Query Frame = 3
Query:    3 FIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWLFRRFCYSSA*HPCFIIVKQWPYEAAAIAFEAIPRTLAQNCGVNVIRTMTALQGKHANGENAWIGIDGNTGAISDMKEGKIWDAYNVKAQTFKTAIEAACMLLRIDDIVSG-IKKKQAPGSGQAP 596
            F+  CK+PKA T+L+RG ++ +++EVER L+DA+ V ++++++  ++P GGA E+ ++ ++ + +  + G E      F                     A A + IP+TLA+N G++ +  +  +  +H N +   IGID   G  +DM E  I     V  Q  K+A  AA M+LRIDD+++  + K +     + P
Sbjct:  362 FVEGCKNPKAVTILIRGGTEHVIDEVERALEDAVKVVKDVMEDGAVLPAGGAPEIELAISVDEYAKQVGGKEALAIENF---------------------ADALKIIPKTLAENAGLDTVEILVKVISEHKN-KGLGIGIDVFAGEPADMLERGIIAPLRVTKQAIKSA-RAAIMILRIDDVIAAKVSKPEGRQGAECP 537          
BLAST of CX069699 vs. ExPASy Swiss-Prot
Match: TCPE_CAEEL (T-complex protein 1 subunit epsilon OS=Caenorhabditis elegans GN=cct-5 PE=1 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 2.081e-20
Identity = 56/181 (30.94%), Postives = 96/181 (53.04%), Query Frame = 3
Query:    6 IVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWLFRRFCYSSA*HPCFIIVKQWPYEAAAIAFEAIPRTLAQNCGVNVIRTMTALQGKHANGENAWIGIDGNTGAISDMKEGKIWDAYNVKAQTFKTAIEAACMLLRIDDI 548
            I  C + KA T+ +RG +K +++E +R L DA+ V RN++++ ++V GGG+ EL  +  + +++  I+GIE++ FR F                     A A E+IP  LA+N G+  I  ++ L+ K      + +GID      +DMKE K+ +    K +    A +   M+L+IDD+
Sbjct:  373 IEQCPNNKAVTIFVRGGNKMIIDEAKRALHDALCVIRNLVRDSRIVYGGGSAELAAAIQVAKEADRIDGIEQYAFRAF---------------------ADALESIPMALAENSGLAPIDALSDLKAKQIETGKSSLGIDAVFAGTNDMKEQKVIETLLSKREQISLATQVVRMILKIDDV 532          
BLAST of CX069699 vs. ExPASy Swiss-Prot
Match: TCPD_PONAB (T-complex protein 1 subunit delta OS=Pongo abelii GN=CCT4 PE=2 SV=3)

HSP 1 Score: 99.7525 bits (247), Expect = 2.081e-20
Identity = 61/184 (33.15%), Postives = 95/184 (51.63%), Query Frame = 3
Query:    6 IVDCKDP-KACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWLFRRFCYSSA*HPCFIIVKQWPYEAAAIAFEAIPRTLAQNCGVNVIRTMTALQGKHANGENAWIGIDGNTGAISDMKEGKIWDAYNVKAQTFKTAIEAACMLLRIDDIVS 554
            I  C  P K  T+++RG++K ++ E ER++ DA+ V R ++K   L+ GGGA E+ ++  L + S ++ G+E +  R F                     A A E IP TLA+N G+N I T+T L+ +HA GE    GI+   G IS++ E  +     V       A E    +L+IDD+V+
Sbjct:  376 ITGCASPGKTVTIVVRGSNKLVIEEAERSIHDALCVIRCLVKKRALIAGGGAPEIELALRLTEYSRTLSGMESYCVRAF---------------------ADAMEVIPSTLAENAGLNPISTVTELRNRHAQGEKT-AGINVRKGGISNILEELVVQPLLVSVSALTLATETVRSILKIDDVVN 537          
The following BLAST results are available for this feature:
BLAST of CX069699 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 142
Match NameE-valueIdentityDescription
TCPH_YEAST5.477e-2130.93T-complex protein 1 subunit eta OS=Saccharomyces c... [more]
TCPD_BOVIN7.153e-2133.15T-complex protein 1 subunit delta OS=Bos taurus GN... [more]
THSB_SULAC1.220e-2030.00Thermosome subunit beta OS=Sulfolobus acidocaldari... [more]
THSA_SULSH1.220e-2032.09Thermosome subunit alpha OS=Sulfolobus shibatae GN... [more]
TCPD_RAT1.594e-2033.15T-complex protein 1 subunit delta OS=Rattus norveg... [more]
TCPD_MOUSE1.594e-2033.15T-complex protein 1 subunit delta OS=Mus musculus ... [more]
THSB_SULSO2.081e-2029.81Thermosome subunit beta OS=Sulfolobus solfataricus... [more]
THSA_THEK82.081e-2030.15Thermosome subunit alpha OS=Thermococcus sp. (stra... [more]
TCPE_CAEEL2.081e-2030.94T-complex protein 1 subunit epsilon OS=Caenorhabdi... [more]
TCPD_PONAB2.081e-2033.15T-complex protein 1 subunit delta OS=Pongo abelii ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_12C05_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-12C05-F10-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069699 ID=CX069699; Name=CX069699; organism=Citrus sinensis; type=EST; length=840bp
CATTCATTGTTGATTGCAAAGATCCAAAAGCTTGTACTGTACTCTTAAGA
GGTGCTAGTAAGGATCTCCTGAATGAAGTGGAAAGGAATTTGCAGGATGC
AATGTCTGTGGCAAGAAACATAATCAAGAATCCAAAACTAGTACCTGGTG
GTGGGGCTACAGAATTAACAGTGTCTGCCACTCTAAAACAAAAGAGTTCC
TCAATCGAAGGCATCGAAAAGTGGCTTTTCCGCCGTTTTTGTTATTCATC
AGCCTGACATCCATGCTTCATCATTGTAAAACAGTGGCCTTACGAAGCTG
CTGCTATTGCTTTTGAGGCTATTCCAAGAACTTTGGCTCAGAATTGTGGC
GTTAATGTAATTCGGACTATGACTGCTCTGCAAGGAAAACATGCAAATGG
TGAAAATGCATGGATCGGCATAGATGGAAACACTGGTGCAATTTCTGACA
TGAAAGAGGGGAAGATCTGGGATGCATATAATGTGAAAGCACAGACATTT
AAGACAGCAATTGAAGCTGCTTGCATGCTTCTGAGGATTGATGACATTGT
CAGTGGAATTAAGAAGAAACAGGCCCCTGGCTCAGGCCAAGCTCCATCGA
AGCCCCAGATTGAGACGGAGGCAGATGCAGATAGTGAGCAAATACTCCCT
GATTAGACAATGTTATTGTCAACGACTATGCAGTTTAATTATTTGAAAAA
ATGTTGGTTTATTGTTCTGTTGGCGGTCTAATGATTTTGCTGAGCTTTTC
CTCCAAATTTTGTGATATTGCGCCAATGTTTTAGCCATTGTAGACAAACT
GGGAAGCTGTGATATGCTCTGCAATATATATATATATTTT
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