CX069699

Overview
NameCX069699
Unique NameCX069699
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length840
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX069699 vs. ExPASy Swiss-Prot
Match: TCPD_HUMAN (T-complex protein 1 subunit delta OS=Homo sapiens GN=CCT4 PE=1 SV=4)

HSP 1 Score: 99.7525 bits (247), Expect = 2.081e-20
Identity = 61/184 (33.15%), Postives = 95/184 (51.63%), Query Frame = 3
Query:    6 IVDCKDP-KACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWLFRRFCYSSA*HPCFIIVKQWPYEAAAIAFEAIPRTLAQNCGVNVIRTMTALQGKHANGENAWIGIDGNTGAISDMKEGKIWDAYNVKAQTFKTAIEAACMLLRIDDIVS 554
            I  C  P K  T+++RG++K ++ E ER++ DA+ V R ++K   L+ GGGA E+ ++  L + S ++ G+E +  R F                     A A E IP TLA+N G+N I T+T L+ +HA GE    GI+   G IS++ E  +     V       A E    +L+IDD+V+
Sbjct:  376 ITGCASPGKTVTIVVRGSNKLVIEEAERSIHDALCVIRCLVKKRALIAGGGAPEIELALRLTEYSRTLSGMESYCVRAF---------------------ADAMEVIPSTLAENAGLNPISTVTELRNRHAQGEKT-AGINVRKGGISNILEELVVQPLLVSVSALTLATETVRSILKIDDVVN 537          
BLAST of CX069699 vs. ExPASy Swiss-Prot
Match: THSA_SULSO (Thermosome subunit alpha OS=Sulfolobus solfataricus GN=thsA PE=3 SV=2)

HSP 1 Score: 99.3673 bits (246), Expect = 2.718e-20
Identity = 65/198 (32.83%), Postives = 103/198 (52.02%), Query Frame = 3
Query:    3 FIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWLFRRFCYSSA*HPCFIIVKQWPYEAAAIAFEAIPRTLAQNCGVNVIRTMTALQGKHANG-ENAWIGIDGNTGAISDMKEGKIWDAYNVKAQTFKTAIEAACMLLRIDDIVSG--IKKKQAPGSG 587
            FI   K+ KA  +LLRG++   L+E ER++ DA+   RNI+  P ++PGGGA EL ++  L++ + S+ G E                     Q   EA A A E IP  LA+  G+  I ++  L+ +HA G  N  + + G    + D+    I +   VK+Q  K+A EAA  +L+IDD+++   +K ++  G G
Sbjct:  367 FIEGAKNLKAVNILLRGSNDMALDEAERSINDALHALRNILLEPVILPGGGAIELELAMKLREYARSVGGKE---------------------QLAIEAFADALEEIPLILAETAGLEAISSLMDLRARHAKGLSNTGVDVIGGK-IVDDVYALNIIEPIRVKSQVLKSATEAATAILKIDDLIAAAPLKSEKKGGEG 542          
BLAST of CX069699 vs. ExPASy Swiss-Prot
Match: THSB_HALSA (Thermosome subunit beta OS=Halobacterium salinarium GN=thsB PE=3 SV=2)

HSP 1 Score: 98.9821 bits (245), Expect = 3.550e-20
Identity = 56/173 (32.37%), Postives = 98/173 (56.65%), Query Frame = 3
Query:   36 TVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWLFRRFCYSSA*HPCFIIVKQWPYEAAAIAFEAIPRTLAQNCGVNVIRTMTALQGKHANGENAWIGIDGNTGAISDMKEGKIWDAYNVKAQTFKTAIEAACMLLRIDDIVS 554
            T+LLRG++  +++E+ER + DA+ V+   + + +++PGGGATE+ V++ L+  + S+ G E                     Q   EA A + E +PR LA+N G++ I T+  L+  H N ++  IG++  +G + D  E  + +  + K Q   +A EAA ++L+IDDI+S
Sbjct:  375 TLLLRGSTDHVVDELERGVSDALDVSAQTLSDGRVLPGGGATEVEVASRLRDFADSVSGRE---------------------QLAVEAFADSLELVPRVLAENAGLDSIDTLVDLRSAHENDDDEHIGLNVLSGDLEDTFEAGVVEPAHAKEQAVTSASEAANLVLKIDDIIS 526          
BLAST of CX069699 vs. ExPASy Swiss-Prot
Match: TCPE_MACFA (T-complex protein 1 subunit epsilon OS=Macaca fascicularis GN=CCT5 PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 4.637e-20
Identity = 56/181 (30.94%), Postives = 95/181 (52.49%), Query Frame = 3
Query:    6 IVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWLFRRFCYSSA*HPCFIIVKQWPYEAAAIAFEAIPRTLAQNCGVNVIRTMTALQGKHANGENAWIGIDGNTGAISDMKEGKIWDAYNVKAQTFKTAIEAACMLLRIDDI 548
            I  CK+ +A T+ +RG +K ++ E +R+L DA+ V RN+I++ ++V GGGA E++ +  + Q++     +E++  R F                     A A E IP  L++N G+N I+TMT ++ +     N  +GID      +DMK+  + +    K Q    A +   M+L+IDDI
Sbjct:  374 IEQCKNSRAVTIFIRGGNKMIIEEAKRSLHDALCVIRNLIRDNRVVYGGGAAEISCALAVSQEADKCPTLEQYAMRAF---------------------ADALEVIPMALSENSGMNPIQTMTEVRARQVKEMNPALGIDCLHKGTNDMKQQHVIETLIGKKQQISLATQMVRMILKIDDI 533          
BLAST of CX069699 vs. ExPASy Swiss-Prot
Match: TCPE_HUMAN (T-complex protein 1 subunit epsilon OS=Homo sapiens GN=CCT5 PE=1 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 4.637e-20
Identity = 56/181 (30.94%), Postives = 95/181 (52.49%), Query Frame = 3
Query:    6 IVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWLFRRFCYSSA*HPCFIIVKQWPYEAAAIAFEAIPRTLAQNCGVNVIRTMTALQGKHANGENAWIGIDGNTGAISDMKEGKIWDAYNVKAQTFKTAIEAACMLLRIDDI 548
            I  CK+ +A T+ +RG +K ++ E +R+L DA+ V RN+I++ ++V GGGA E++ +  + Q++     +E++  R F                     A A E IP  L++N G+N I+TMT ++ +     N  +GID      +DMK+  + +    K Q    A +   M+L+IDDI
Sbjct:  374 IEQCKNSRAVTIFIRGGNKMIIEEAKRSLHDALCVIRNLIRDNRVVYGGGAAEISCALAVSQEADKCPTLEQYAMRAF---------------------ADALEVIPMALSENSGMNPIQTMTEVRARQVKEMNPALGIDCLHKGTNDMKQQHVIETLIGKKQQISLATQMVRMILKIDDI 533          
BLAST of CX069699 vs. ExPASy Swiss-Prot
Match: THSB_SULSH (Thermosome subunit beta OS=Sulfolobus shibatae GN=thsB PE=1 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 6.056e-20
Identity = 63/210 (30.00%), Postives = 105/210 (50.00%), Query Frame = 3
Query:    3 FIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWLFRRFCYSSA*HPCFIIVKQWPYEAAAIAFEAIPRTLAQNCGVNVIRTMTALQGKHANGENAWIGIDGNTGAISDMKEGKIWDAYNVKAQTFKTAIEAACMLLRIDDIVSGIKKKQAPGSGQAPSKPQIETEADAD 632
            F+   K+PK+ ++L+RG  + +++E ER L+DA+    ++I++ + V GGGA E+ ++  L++ +  + G E                     Q   EA A A E +   LA+N G++ I  +  L+  H N  N W G++  TG   DM +  + +   VK    K A EA  ++LRIDDIV+  KK    G  +   K + E ++  D
Sbjct:  368 FVEGAKNPKSVSILIRGGLERVVDETERALRDALGTVADVIRDGRAVAGGGAVEIEIAKRLRKYAPQVGGKE---------------------QLAIEAYANAIEGLIMILAENAGLDPIDKLMQLRSLHENETNKWYGLNLFTGNPEDMWKLGVIEPALVKMNAIKAATEAVTLVLRIDDIVAAGKK----GGSEPGGKKEKEEKSSED 552          
BLAST of CX069699 vs. ExPASy Swiss-Prot
Match: TCPE_DICDI (T-complex protein 1 subunit epsilon OS=Dictyostelium discoideum GN=cct5 PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 7.909e-20
Identity = 57/195 (29.23%), Postives = 100/195 (51.28%), Query Frame = 3
Query:    6 IVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWLFRRFCYSSA*HPCFIIVKQWPYEAAAIAFEAIPRTLAQNCGVNVIRTMTALQGKHANGENAWIGIDGNTGAISDMKEGKIWDAYNVKAQTFKTAIEAACMLLRIDDIVSGIKKKQAPGSGQ 590
            I DC +  A T+ +RG +K ++ E +R++ DA+ V RN+I++ +++ GGG++E++    +   +  I  IE++  R F                     A A +AIP  LA+N G+  I +++ ++      +N  +GID N    +DMK   ++D    K Q F  A +   M+L+IDDI+     K  PG+ +
Sbjct:  370 IEDCPNTNAVTIFVRGGNKMIVEEAKRSIHDALCVTRNLIRDNRVIYGGGSSEISCGLKISAMADDIASIEQYAVRAF---------------------ADALDAIPLALAENSGLPSIESLSTVKAMQIKEKNPRLGIDCNHRDTNDMKAQHVFDTLPGKTQQFLLANQVVKMILKIDDII-----KMGPGADE 538          
BLAST of CX069699 vs. ExPASy Swiss-Prot
Match: TCPH_SCHPO (Probable T-complex protein 1 subunit eta OS=Schizosaccharomyces pombe GN=cct7 PE=1 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 1.033e-19
Identity = 61/197 (30.96%), Postives = 99/197 (50.25%), Query Frame = 3
Query:   15 CKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWLFRRFCYSSA*HPCFIIVKQWPYEAA-AIAFEAIPRTLAQNCGVNVIRTMTALQGKHANGENAWIGIDGNTGAISDMKEGKIWDAYNVKAQTFKTAIEAACMLLRIDDIVSG--IKKKQAPGSGQAP 596
            C   K CT++LRG +   + EVER+L DA+ + ++ +KN  +V GGGA E+ +S  L+  S +I G                      KQ  + AA A + E IPR L  N G +    +  L+ +HA GE  W G+D ++  +++  E  +W+   VK+    +A EAA ++L +D+ +     ++ QAP     P
Sbjct:  369 CPKAKTCTLILRGGADQFIAEVERSLHDAIMIVKHALKNNLVVAGGGACEMELSKYLRDYSLTISG----------------------KQQNFIAAFARSLEVIPRQLCDNAGFDSTNILNKLRMQHAKGE-MWAGVDMDSEGVANNFEKFVWEPSTVKSNAILSATEAATLILSVDETIKNEPSQQPQAPQGALPP 542          
BLAST of CX069699 vs. ExPASy Swiss-Prot
Match: TCPE_PONAB (T-complex protein 1 subunit epsilon OS=Pongo abelii GN=CCT5 PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 1.033e-19
Identity = 56/181 (30.94%), Postives = 94/181 (51.93%), Query Frame = 3
Query:    6 IVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWLFRRFCYSSA*HPCFIIVKQWPYEAAAIAFEAIPRTLAQNCGVNVIRTMTALQGKHANGENAWIGIDGNTGAISDMKEGKIWDAYNVKAQTFKTAIEAACMLLRIDDI 548
            I  CK+ +A T+ +RG +K ++ E +R+L DA+ V RN+I++ ++V GGGA E + +  + Q++     +E++  R F                     A A E IP  L++N G+N I+TMT ++ +     N  +GID      +DMK+  + +    K Q    A +   M+L+IDDI
Sbjct:  374 IEQCKNSRAVTIFIRGGNKMIIEEAKRSLHDALCVIRNLIRDNRVVYGGGAAETSCALAVSQEADKCPTLEQYAMRAF---------------------ADALEVIPMALSENSGMNPIQTMTEVRARQVKEMNPALGIDCLHKGTNDMKQQHVIETLIGKKQQISLATQMVRMILKIDDI 533          
BLAST of CX069699 vs. ExPASy Swiss-Prot
Match: TCPQ_MOUSE (T-complex protein 1 subunit theta OS=Mus musculus GN=Cct8 PE=1 SV=3)

HSP 1 Score: 97.0561 bits (240), Expect = 1.349e-19
Identity = 59/204 (28.92%), Postives = 100/204 (49.02%), Query Frame = 3
Query:   18 KDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWLFRRFCYSSA*HPCFIIVKQWPYEAAAIAFEAIPRTLAQNCGVNVIRTMTALQGKHANG-ENAWIGIDGNTGAISDMKEGKIWDAYNVKAQTFKTAIEAACMLLRIDDIVSGIKKKQAPGSGQAPSKPQIETEAD 626
            +D    T++LRG++ +L++++ER + D ++  + + ++ +LVPGGGATE+ ++  +     +  G+E++  ++F                     A AFEAIPR LA+N GV     ++ L   H  G +N  + I+    A+ DM E  I D Y  K    K A  AA  +LR+D I+        P  G  P   + + + D
Sbjct:  368 EDGAISTIVLRGSTDNLMDDIERAVDDGVNTFKVLTRDKRLVPGGGATEIELAKQITSYGETCPGLEQYAIKKF---------------------AEAFEAIPRALAENSGVKANEVISKLYSVHQEGNKNVGLDIEAEVPAVKDMLEASILDTYLGKYWAIKLATNAAVTVLRVDQIIMA-----KPAGGPKPPSGKKDWDDD 545          
The following BLAST results are available for this feature:
BLAST of CX069699 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 142
Match NameE-valueIdentityDescription
TCPD_HUMAN2.081e-2033.15T-complex protein 1 subunit delta OS=Homo sapiens ... [more]
THSA_SULSO2.718e-2032.83Thermosome subunit alpha OS=Sulfolobus solfataricu... [more]
THSB_HALSA3.550e-2032.37Thermosome subunit beta OS=Halobacterium salinariu... [more]
TCPE_MACFA4.637e-2030.94T-complex protein 1 subunit epsilon OS=Macaca fasc... [more]
TCPE_HUMAN4.637e-2030.94T-complex protein 1 subunit epsilon OS=Homo sapien... [more]
THSB_SULSH6.056e-2030.00Thermosome subunit beta OS=Sulfolobus shibatae GN=... [more]
TCPE_DICDI7.909e-2029.23T-complex protein 1 subunit epsilon OS=Dictyosteli... [more]
TCPH_SCHPO1.033e-1930.96Probable T-complex protein 1 subunit eta OS=Schizo... [more]
TCPE_PONAB1.033e-1930.94T-complex protein 1 subunit epsilon OS=Pongo abeli... [more]
TCPQ_MOUSE1.349e-1928.92T-complex protein 1 subunit theta OS=Mus musculus ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_12C05_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-12C05-F10-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069699 ID=CX069699; Name=CX069699; organism=Citrus sinensis; type=EST; length=840bp
CATTCATTGTTGATTGCAAAGATCCAAAAGCTTGTACTGTACTCTTAAGA
GGTGCTAGTAAGGATCTCCTGAATGAAGTGGAAAGGAATTTGCAGGATGC
AATGTCTGTGGCAAGAAACATAATCAAGAATCCAAAACTAGTACCTGGTG
GTGGGGCTACAGAATTAACAGTGTCTGCCACTCTAAAACAAAAGAGTTCC
TCAATCGAAGGCATCGAAAAGTGGCTTTTCCGCCGTTTTTGTTATTCATC
AGCCTGACATCCATGCTTCATCATTGTAAAACAGTGGCCTTACGAAGCTG
CTGCTATTGCTTTTGAGGCTATTCCAAGAACTTTGGCTCAGAATTGTGGC
GTTAATGTAATTCGGACTATGACTGCTCTGCAAGGAAAACATGCAAATGG
TGAAAATGCATGGATCGGCATAGATGGAAACACTGGTGCAATTTCTGACA
TGAAAGAGGGGAAGATCTGGGATGCATATAATGTGAAAGCACAGACATTT
AAGACAGCAATTGAAGCTGCTTGCATGCTTCTGAGGATTGATGACATTGT
CAGTGGAATTAAGAAGAAACAGGCCCCTGGCTCAGGCCAAGCTCCATCGA
AGCCCCAGATTGAGACGGAGGCAGATGCAGATAGTGAGCAAATACTCCCT
GATTAGACAATGTTATTGTCAACGACTATGCAGTTTAATTATTTGAAAAA
ATGTTGGTTTATTGTTCTGTTGGCGGTCTAATGATTTTGCTGAGCTTTTC
CTCCAAATTTTGTGATATTGCGCCAATGTTTTAGCCATTGTAGACAAACT
GGGAAGCTGTGATATGCTCTGCAATATATATATATATTTT
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