CX069699

Overview
NameCX069699
Unique NameCX069699
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length840
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX069699 vs. ExPASy Swiss-Prot
Match: TCPE_YEAST (T-complex protein 1 subunit epsilon OS=Saccharomyces cerevisiae GN=CCT5 PE=1 SV=3)

HSP 1 Score: 96.6709 bits (239), Expect = 1.762e-19
Identity = 57/182 (31.32%), Postives = 99/182 (54.40%), Query Frame = 3
Query:    6 IVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWLFRRFCYSSA*HPCFIIVKQWPYEAAAIAFEAIPRTLAQNCGVNVIRTMTALQGKHANGENAWIGIDGNTGAISDMKEGKIWDAYNVKAQTFKTAIEAACMLLRIDDIV 551
            I   K+ K  T  +RG++K +++E ER L D++ V RN++K+ ++V GGGA E+T+S  + +++    GI+++ FR F                     A A + IP TLA+N G++ I T++ L+ K    + + IG+D      +DMKE  + D +  K Q    A +   M+L+ID+++
Sbjct:  395 IEQSKETKTVTCFVRGSNKMIVDEAERALHDSLCVVRNLVKDSRVVYGGGAAEVTMSLAVSEEADKQRGIDQYAFRGF---------------------AQALDTIPMTLAENSGLDPIGTLSTLKSKQLKEKISNIGVDCLGYGSNDMKELFVVDPFIGKKQQILLATQLCRMILKIDNVI 555          
BLAST of CX069699 vs. ExPASy Swiss-Prot
Match: TCPQ_PONAB (T-complex protein 1 subunit theta OS=Pongo abelii GN=CCT8 PE=2 SV=3)

HSP 1 Score: 96.2857 bits (238), Expect = 2.301e-19
Identity = 59/204 (28.92%), Postives = 100/204 (49.02%), Query Frame = 3
Query:   18 KDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWLFRRFCYSSA*HPCFIIVKQWPYEAAAIAFEAIPRTLAQNCGVNVIRTMTALQGKHANG-ENAWIGIDGNTGAISDMKEGKIWDAYNVKAQTFKTAIEAACMLLRIDDIVSGIKKKQAPGSGQAPSKPQIETEAD 626
            +D    T++LRG++ +L++++ER + D ++  + + ++ +LVPGGGATE+ ++  +     +  G+E++  ++F                     A AFEAIPR LA+N GV     ++ L   H  G +N  + I+    A+ DM E  I D Y  K    K A  AA  +LR+D I+        P  G  P   + + + D
Sbjct:  368 EDGAISTIVLRGSTDNLMDDIERAVDDGVNTFKVLTRDKRLVPGGGATEIELAKQITSYGETCPGLEQYAIKKF---------------------AEAFEAIPRALAENSGVKANEVISKLYAVHQEGNKNVGLDIEAEVPAVKDMLEAGILDTYLGKYWAIKLATNAAVTVLRVDQIIMA-----KPAGGPKPPSGKKDWDDD 545          
BLAST of CX069699 vs. ExPASy Swiss-Prot
Match: TCPQ_MACFA (T-complex protein 1 subunit theta OS=Macaca fascicularis GN=CCT8 PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.301e-19
Identity = 59/204 (28.92%), Postives = 100/204 (49.02%), Query Frame = 3
Query:   18 KDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWLFRRFCYSSA*HPCFIIVKQWPYEAAAIAFEAIPRTLAQNCGVNVIRTMTALQGKHANG-ENAWIGIDGNTGAISDMKEGKIWDAYNVKAQTFKTAIEAACMLLRIDDIVSGIKKKQAPGSGQAPSKPQIETEAD 626
            +D    T++LRG++ +L++++ER + D ++  + + ++ +LVPGGGATE+ ++  +     +  G+E++  ++F                     A AFEAIPR LA+N GV     ++ L   H  G +N  + I+    A+ DM E  I D Y  K    K A  AA  +LR+D I+        P  G  P   + + + D
Sbjct:  368 EDGAISTIVLRGSTDNLMDDIERAVDDGVNTFKVLTRDKRLVPGGGATEIELAKQITSYGETCPGLEQYAIKKF---------------------AEAFEAIPRALAENSGVKANEVISKLYAVHQEGNKNVGLDIEAEVPAVKDMLEAGILDTYLGKYWAIKLATNAAVTVLRVDQIIMA-----KPAGGPKPPSGKKDWDDD 545          
BLAST of CX069699 vs. ExPASy Swiss-Prot
Match: TCPQ_HUMAN (T-complex protein 1 subunit theta OS=Homo sapiens GN=CCT8 PE=1 SV=4)

HSP 1 Score: 96.2857 bits (238), Expect = 2.301e-19
Identity = 59/204 (28.92%), Postives = 100/204 (49.02%), Query Frame = 3
Query:   18 KDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWLFRRFCYSSA*HPCFIIVKQWPYEAAAIAFEAIPRTLAQNCGVNVIRTMTALQGKHANG-ENAWIGIDGNTGAISDMKEGKIWDAYNVKAQTFKTAIEAACMLLRIDDIVSGIKKKQAPGSGQAPSKPQIETEAD 626
            +D    T++LRG++ +L++++ER + D ++  + + ++ +LVPGGGATE+ ++  +     +  G+E++  ++F                     A AFEAIPR LA+N GV     ++ L   H  G +N  + I+    A+ DM E  I D Y  K    K A  AA  +LR+D I+        P  G  P   + + + D
Sbjct:  368 EDGAISTIVLRGSTDNLMDDIERAVDDGVNTFKVLTRDKRLVPGGGATEIELAKQITSYGETCPGLEQYAIKKF---------------------AEAFEAIPRALAENSGVKANEVISKLYAVHQEGNKNVGLDIEAEVPAVKDMLEAGILDTYLGKYWAIKLATNAAVTVLRVDQIIMA-----KPAGGPKPPSGKKDWDDD 545          
BLAST of CX069699 vs. ExPASy Swiss-Prot
Match: TCPQ_BOVIN (T-complex protein 1 subunit theta OS=Bos taurus GN=CCT8 PE=2 SV=3)

HSP 1 Score: 96.2857 bits (238), Expect = 2.301e-19
Identity = 58/204 (28.43%), Postives = 100/204 (49.02%), Query Frame = 3
Query:   18 KDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWLFRRFCYSSA*HPCFIIVKQWPYEAAAIAFEAIPRTLAQNCGVNVIRTMTALQGKHANG-ENAWIGIDGNTGAISDMKEGKIWDAYNVKAQTFKTAIEAACMLLRIDDIVSGIKKKQAPGSGQAPSKPQIETEAD 626
            +D    T++LRG++ +L++++ER + D ++  + + ++ +LVPGGGATE+ ++  +     +  G+E++  ++F                     A AFEAIPR LA+N GV     ++ L   H  G +N  + I+    A+ DM E  + D Y  K    K A  AA  +LR+D I+        P  G  P   + + + D
Sbjct:  368 EDGAISTIVLRGSTDNLMDDIERAVDDGVNTFKVLTRDKRLVPGGGATEIELAKQITSYGETCPGLEQYAIKKF---------------------AEAFEAIPRALAENSGVKANEVISKLYAVHQEGNKNVGLDIEAEVPAVKDMLEAGVLDTYLGKYWAIKLATNAAVTVLRVDQIIMA-----KPAGGPKPPSGKKDWDED 545          
BLAST of CX069699 vs. ExPASy Swiss-Prot
Match: TCPD_AEDTR (T-complex protein 1 subunit delta OS=Aedes triseriatus PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.301e-19
Identity = 57/173 (32.95%), Postives = 92/173 (53.18%), Query Frame = 3
Query:   36 TVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWLFRRFCYSSA*HPCFIIVKQWPYEAAAIAFEAIPRTLAQNCGVNVIRTMTALQGKHANGENAWIGIDGNTGAISDMKEGKIWDAYNVKAQTFKTAIEAACMLLRIDDIVS 554
            ++++RG++K +L E ER+L DA+ V R ++K    + GGGA E+ ++  L   + ++EG++ + FR F                     A A E IP TLA+N G+N I T+T L+ +HA GE    GI+   GAI+D+    +     V   +   A E    +L+IDDI++
Sbjct:  380 SIVVRGSNKLVLEEAERSLHDALCVVRCLVKKRAQIAGGGAPEIEMAIQLAAHAQTLEGVDAYCFRAF---------------------ANALEVIPSTLAENAGLNPIATVTELRNRHAQGEKN-AGINVRKGAITDILAENVVQPLLVSTSSITLASETVRSILKIDDIIN 530          
BLAST of CX069699 vs. ExPASy Swiss-Prot
Match: TCPE_RAT (T-complex protein 1 subunit epsilon OS=Rattus norvegicus GN=Cct5 PE=1 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 3.005e-19
Identity = 55/181 (30.39%), Postives = 94/181 (51.93%), Query Frame = 3
Query:    6 IVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWLFRRFCYSSA*HPCFIIVKQWPYEAAAIAFEAIPRTLAQNCGVNVIRTMTALQGKHANGENAWIGIDGNTGAISDMKEGKIWDAYNVKAQTFKTAIEAACMLLRIDDI 548
            I  CK+ +A T+ +RG +K ++ E +R+L DA+ V RN+I++ ++V GGGA E++ +  + Q++     +E++  R F                     A A E IP  L++N G+N I+TMT ++ +     N  +GID      +DM+   + +    K Q    A +   M+L+IDDI
Sbjct:  374 IEQCKNSRAVTIFIRGGNKMIIEEAKRSLHDALCVIRNLIRDNRVVYGGGAAEISCALAVSQEADKCPTLEQYAMRAF---------------------ADALEVIPMALSENSGMNPIQTMTEVRARQVKESNPALGIDCLHKGSNDMQYQHVIETLIGKKQQISLATQMVRMILKIDDI 533          
BLAST of CX069699 vs. ExPASy Swiss-Prot
Match: TCPE_MOUSE (T-complex protein 1 subunit epsilon OS=Mus musculus GN=Cct5 PE=1 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.925e-19
Identity = 55/181 (30.39%), Postives = 94/181 (51.93%), Query Frame = 3
Query:    6 IVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWLFRRFCYSSA*HPCFIIVKQWPYEAAAIAFEAIPRTLAQNCGVNVIRTMTALQGKHANGENAWIGIDGNTGAISDMKEGKIWDAYNVKAQTFKTAIEAACMLLRIDDI 548
            I  CK+ +A T+ +RG +K ++ E +R+L DA+ V RN+I++ ++V GGGA E++ +  + Q++     +E++  R F                     A A E IP  L++N G+N I+TMT ++ +     N  +GID      +DM+   + +    K Q    A +   M+L+IDDI
Sbjct:  374 IEKCKNSRAVTIFIRGGNKMIIEEAKRSLHDALCVIRNLIRDNRVVYGGGAAEISCALAVSQEADKCPTLEQYAMRAF---------------------ADALEVIPMALSENSGMNPIQTMTEVRARQVKESNPALGIDCLHKGSNDMQYQHVIETLIGKKQQISLATQMVRMILKIDDI 533          
BLAST of CX069699 vs. ExPASy Swiss-Prot
Match: TCPD_DICDI (T-complex protein 1 subunit delta OS=Dictyostelium discoideum GN=cct4 PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.925e-19
Identity = 64/177 (36.16%), Postives = 93/177 (52.54%), Query Frame = 3
Query:   27 KACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWLFRRFCYSSA*HPCFIIVKQWPYEAAAIAFEAIPRTLAQNCGVNVIRTMTALQGKHANGE-NAWIGIDGNTGAISDMKEGKIWDAYNVKAQTFKTAIEAACMLLRIDDIVS 554
            K  TVL RG++K +L+E ER+L DA+ V R+++K   L+ GGGA E+ VS  +   S ++ GI  +  R                     A A A E IP TLA+N G++ I  +T L+ KHA GE N+  GI+   GAI+++ +  +     V       A E   MLL+IDDI +
Sbjct:  378 KTVTVLCRGSNKLVLDEAERSLHDALCVIRSLVKKKFLIAGGGAPEIEVSQQVTAFSKTLTGITSYCVR---------------------AYAEALEIIPYTLAENAGLHPISIVTELRNKHAQGEINS--GINVRKGAITNILQENVVQPLLVSTSALTLATETVVMLLKIDDIAT 531          
BLAST of CX069699 vs. ExPASy Swiss-Prot
Match: THS3_HALVO (Thermosome subunit 3 OS=Halobacterium volcanii GN=cct3 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 5.126e-19
Identity = 59/176 (33.52%), Postives = 95/176 (53.98%), Query Frame = 3
Query:   27 KACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWLFRRFCYSSA*HPCFIIVKQWPYEAAAIAFEAIPRTLAQNCGVNVIRTMTALQGKHANGENAWIGIDGNTGAISDMKEGKIWDAYNVKAQTFKTAIEAACMLLRIDDIVS 554
            KA T+ LRG ++ ++ E+ER ++DA+ V    I    +VPG GATE+ ++  ++ +++ IEG                      KQ   EA A A EA+PRTLA+N G++ I  +  L+ ++     A I   G +G I D  E  + D   VK +  ++A EAA M++RIDD+++
Sbjct:  368 KAVTLFLRGGTEHVVYELERAIEDAVDVVVAAIDKGGVVPGAGATEIAIADRIRSEAAGIEGR---------------------KQLAVEAYADAVEALPRTLAENTGMDPIDALVDLRARYETEGLAGIISSGRSGEIGDPVELGVIDPVAVKREAIESATEAATMIVRIDDVIA 522          
The following BLAST results are available for this feature:
BLAST of CX069699 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 142
Match NameE-valueIdentityDescription
TCPE_YEAST1.762e-1931.32T-complex protein 1 subunit epsilon OS=Saccharomyc... [more]
TCPQ_PONAB2.301e-1928.92T-complex protein 1 subunit theta OS=Pongo abelii ... [more]
TCPQ_MACFA2.301e-1928.92T-complex protein 1 subunit theta OS=Macaca fascic... [more]
TCPQ_HUMAN2.301e-1928.92T-complex protein 1 subunit theta OS=Homo sapiens ... [more]
TCPQ_BOVIN2.301e-1928.43T-complex protein 1 subunit theta OS=Bos taurus GN... [more]
TCPD_AEDTR2.301e-1932.95T-complex protein 1 subunit delta OS=Aedes triseri... [more]
TCPE_RAT3.005e-1930.39T-complex protein 1 subunit epsilon OS=Rattus norv... [more]
TCPE_MOUSE3.925e-1930.39T-complex protein 1 subunit epsilon OS=Mus musculu... [more]
TCPD_DICDI3.925e-1936.16T-complex protein 1 subunit delta OS=Dictyostelium... [more]
THS3_HALVO5.126e-1933.52Thermosome subunit 3 OS=Halobacterium volcanii GN=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_12C05_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-12C05-F10-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069699 ID=CX069699; Name=CX069699; organism=Citrus sinensis; type=EST; length=840bp
CATTCATTGTTGATTGCAAAGATCCAAAAGCTTGTACTGTACTCTTAAGA
GGTGCTAGTAAGGATCTCCTGAATGAAGTGGAAAGGAATTTGCAGGATGC
AATGTCTGTGGCAAGAAACATAATCAAGAATCCAAAACTAGTACCTGGTG
GTGGGGCTACAGAATTAACAGTGTCTGCCACTCTAAAACAAAAGAGTTCC
TCAATCGAAGGCATCGAAAAGTGGCTTTTCCGCCGTTTTTGTTATTCATC
AGCCTGACATCCATGCTTCATCATTGTAAAACAGTGGCCTTACGAAGCTG
CTGCTATTGCTTTTGAGGCTATTCCAAGAACTTTGGCTCAGAATTGTGGC
GTTAATGTAATTCGGACTATGACTGCTCTGCAAGGAAAACATGCAAATGG
TGAAAATGCATGGATCGGCATAGATGGAAACACTGGTGCAATTTCTGACA
TGAAAGAGGGGAAGATCTGGGATGCATATAATGTGAAAGCACAGACATTT
AAGACAGCAATTGAAGCTGCTTGCATGCTTCTGAGGATTGATGACATTGT
CAGTGGAATTAAGAAGAAACAGGCCCCTGGCTCAGGCCAAGCTCCATCGA
AGCCCCAGATTGAGACGGAGGCAGATGCAGATAGTGAGCAAATACTCCCT
GATTAGACAATGTTATTGTCAACGACTATGCAGTTTAATTATTTGAAAAA
ATGTTGGTTTATTGTTCTGTTGGCGGTCTAATGATTTTGCTGAGCTTTTC
CTCCAAATTTTGTGATATTGCGCCAATGTTTTAGCCATTGTAGACAAACT
GGGAAGCTGTGATATGCTCTGCAATATATATATATATTTT
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