CX069699

Overview
NameCX069699
Unique NameCX069699
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length840
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX069699 vs. ExPASy Swiss-Prot
Match: TCPB_RAT (T-complex protein 1 subunit beta OS=Rattus norvegicus GN=Cct2 PE=1 SV=3)

HSP 1 Score: 91.2781 bits (225), Expect = 7.402e-18
Identity = 55/184 (29.89%), Postives = 92/184 (50.00%), Query Frame = 3
Query:   27 KACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWLFRRFCYSSA*HPCFIIVKQWPYEAAAIAFEAIPRTLAQNCGVNVIRTMTALQGKHANGENAWIGIDGNTGAISDMKEGKIWDAYNVKAQTFKTAIEAACMLLRIDDIVSGIKKKQAP 578
            +ACT++LRGA++ +L+E ER+L DA+ V    +K+P+ V GGG +E+ ++  +   +S   G E      F                     A A   +P  +A N G +    +  L+  H+ G     G+D   G+I DM    I +++ VK Q   +A EAA ++LR+D+I+    +K+ P
Sbjct:  369 EACTIVLRGATQQILDEAERSLHDALCVLAQTVKDPRTVYGGGCSEMLMAHAVTMLASRTPGKEAVAMESF---------------------AKALRMLPTIIADNAGYDSADLVAQLRAAHSEG-RITAGLDMKEGSIGDMAVLGITESFQVKRQVLLSAAEAAEVILRVDNIIKAAPRKRVP 530          
BLAST of CX069699 vs. ExPASy Swiss-Prot
Match: TCPB_CAEEL (T-complex protein 1 subunit beta OS=Caenorhabditis elegans GN=cct-2 PE=2 SV=2)

HSP 1 Score: 91.2781 bits (225), Expect = 7.402e-18
Identity = 55/183 (30.05%), Postives = 95/183 (51.91%), Query Frame = 3
Query:   27 KACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWLFRRFCYSSA*HPCFIIVKQWPYEAAAIAFEAIPRTLAQNCGVNVIRTMTALQGKHANGENAWIGIDGNTGAISDMKEGKIWDAYNVKAQTFKTAIEAACMLLRIDDIVSGIKKKQA 575
            +AC+V+LRGA++ +L+E ER+L DA+ V    +K  K V G GA+E+ +S+ +  ++  + G E                         EA   A   +P  +  N G++    +T L+ +HANG +  +GID   G ++D+ +  + ++YNVK     +A EA   +LR+DDI+    + +A
Sbjct:  363 EACSVVLRGATQQILDESERSLHDALCVLVTHVKESKTVAGAGASEILMSSAIAVEAQKVAGKE---------------------ALAVEAFGRALAQLPTIICDNAGLDSAELVTRLRAEHANGRHN-MGIDIEKGEVADVTKLGVIESYNVKLCMVSSAAEATEQILRVDDIIKAAPRARA 523          
BLAST of CX069699 vs. ExPASy Swiss-Prot
Match: TCPB_BOVIN (T-complex protein 1 subunit beta OS=Bos taurus GN=CCT2 PE=2 SV=3)

HSP 1 Score: 91.2781 bits (225), Expect = 7.402e-18
Identity = 55/184 (29.89%), Postives = 93/184 (50.54%), Query Frame = 3
Query:   27 KACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWLFRRFCYSSA*HPCFIIVKQWPYEAAAIAFEAIPRTLAQNCGVNVIRTMTALQGKHANGENAWIGIDGNTGAISDMKEGKIWDAYNVKAQTFKTAIEAACMLLRIDDIVSGIKKKQAP 578
            +ACT++LRGA++ +L+E ER+L DA+ V    +K+ + V GGG +E+ ++  + Q +S   G E                         E+ A A   +P  +A N G +    +  L+  H+ G+    G+D   G I DM    I +++ VK Q   +A EAA ++LR+D+I+    +K+ P
Sbjct:  369 EACTIVLRGATQQILDEAERSLHDALCVLAQTVKDSRTVYGGGCSEMLMAHAVTQLASRTPGKEAVAM---------------------ESYAKALRMLPTIIADNAGYDSADLVAQLRAAHSEGKTT-AGLDMKEGTIGDMSVLGITESFQVKRQVLLSAAEAAEVILRVDNIIKAAPRKRVP 530          
BLAST of CX069699 vs. ExPASy Swiss-Prot
Match: THSG_SULSO (Thermosome subunit gamma OS=Sulfolobus solfataricus GN=thsC PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 9.668e-18
Identity = 61/186 (32.80%), Postives = 96/186 (51.61%), Query Frame = 3
Query:   27 KACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWLFRRFCYSSA*HPCFIIVKQWPYEAAAIAFEAIPRTLAQNCGVNVIRTMTALQGKHANG-ENAWIGIDGNTGAISD-MKEGKIWDAYNVKAQTFKTAIEAACMLLRIDDIVSGIKKKQAP 578
            KA TV+++G++  + +E ER+L DA +  RN++  P +V GGGA E  ++  L+  +  + G E+  F  F                     A A E     L++  G++ I  +T ++ KHA G +NA  GID     I D M E ++ D+  VK Q  K+A EAA  +L+IDD+++    KQ P
Sbjct:  363 KAVTVIIKGSNNMITDEAERSLNDAFNSIRNLLLEPYIVAGGGAVEEELAKRLRDDARKVIGKEQLAFNAF---------------------ADALEEYVSILSETAGMDPISALTEIRHKHATGLKNA--GIDVTKARIYDNMLELRVIDSLKVKEQVLKSATEAATAILKIDDMIAAAPAKQQP 525          
BLAST of CX069699 vs. ExPASy Swiss-Prot
Match: THS2_HALVO (Thermosome subunit 2 OS=Halobacterium volcanii GN=cct2 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 9.668e-18
Identity = 54/178 (30.34%), Postives = 97/178 (54.49%), Query Frame = 3
Query:   21 DPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWLFRRFCYSSA*HPCFIIVKQWPYEAAAIAFEAIPRTLAQNCGVNVIRTMTALQGKHANGENAWIGIDGNTGAISDMKEGKIWDAYNVKAQTFKTAIEAACMLLRIDDIVS 554
            D    T+LLRG++  +++E+ER +QDA+ V  + + + +++ GGGA E+ +++ L+  + S+ G E                     Q   EA A A E +PR LA+N G++ I T+  L+  H +G+    G++  TG + D  +  + +  + K Q   +A EAA ++L+IDDI++
Sbjct:  369 DVHGVTLLLRGSTDHVVDELERGVQDALDVVASTVADGRVLAGGGAIEVELASRLRNYADSVSGRE---------------------QLAVEAYADALELVPRVLAENAGLDSIDTLVDLRAAHEDGQ-VRAGLNVFTGEVEDAFDAGVVETAHAKEQAVASASEAANLVLKIDDIIA 524          
BLAST of CX069699 vs. ExPASy Swiss-Prot
Match: TCPB_MACFA (T-complex protein 1 subunit beta OS=Macaca fascicularis GN=CCT2 PE=2 SV=3)

HSP 1 Score: 90.5077 bits (223), Expect = 1.263e-17
Identity = 55/184 (29.89%), Postives = 93/184 (50.54%), Query Frame = 3
Query:   27 KACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWLFRRFCYSSA*HPCFIIVKQWPYEAAAIAFEAIPRTLAQNCGVNVIRTMTALQGKHANGENAWIGIDGNTGAISDMKEGKIWDAYNVKAQTFKTAIEAACMLLRIDDIVSGIKKKQAP 578
            +ACT++LRGA++ +L+E ER+L DA+ V    +K+ + V GGG +E+ ++  + Q ++   G E                         E+ A A   +P  +A N G +    +  L+  H+ G N   G+D   G I DM    I +++ VK Q   +A EAA ++LR+D+I+    +K+ P
Sbjct:  369 EACTIVLRGATQQILDEAERSLHDALCVLAQTVKDSRTVYGGGCSEMLMAHAVTQLANRTPGKEAVAM---------------------ESYAKALRMLPTIIADNAGYDSADLVAQLRAAHSEG-NTTAGLDMREGTIGDMAILGITESFQVKRQVLLSAAEAAEVILRVDNIIKAAPRKRVP 530          
BLAST of CX069699 vs. ExPASy Swiss-Prot
Match: TCPB_HUMAN (T-complex protein 1 subunit beta OS=Homo sapiens GN=CCT2 PE=1 SV=4)

HSP 1 Score: 90.5077 bits (223), Expect = 1.263e-17
Identity = 55/184 (29.89%), Postives = 93/184 (50.54%), Query Frame = 3
Query:   27 KACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWLFRRFCYSSA*HPCFIIVKQWPYEAAAIAFEAIPRTLAQNCGVNVIRTMTALQGKHANGENAWIGIDGNTGAISDMKEGKIWDAYNVKAQTFKTAIEAACMLLRIDDIVSGIKKKQAP 578
            +ACT++LRGA++ +L+E ER+L DA+ V    +K+ + V GGG +E+ ++  + Q ++   G E                         E+ A A   +P  +A N G +    +  L+  H+ G N   G+D   G I DM    I +++ VK Q   +A EAA ++LR+D+I+    +K+ P
Sbjct:  369 EACTIVLRGATQQILDEAERSLHDALCVLAQTVKDSRTVYGGGCSEMLMAHAVTQLANRTPGKEAVAM---------------------ESYAKALRMLPTIIADNAGYDSADLVAQLRAAHSEG-NTTAGLDMREGTIGDMAILGITESFQVKRQVLLSAAEAAEVILRVDNIIKAAPRKRVP 530          
BLAST of CX069699 vs. ExPASy Swiss-Prot
Match: TCPD_SCHPO (T-complex protein 1 subunit delta OS=Schizosaccharomyces pombe GN=cct4 PE=2 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 1.649e-17
Identity = 56/174 (32.18%), Postives = 87/174 (50.00%), Query Frame = 3
Query:   27 KACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWLFRRFCYSSA*HPCFIIVKQWPYEAAAIAFEAIPRTLAQNCGVNVIRTMTALQGKHANGENAWIGIDGNTGAISDMKEGKIWDAYNVKAQTFKTAIEAACMLLRIDDI 548
            K  ++L RGA+   L E ER+L DA+ V R ++K   L+ GGG+ E+  +  L + +  +EG E    R F                     + A E IP TLA+N G+N I+ +T L+ +HANGE    GI+   G ++++ E  +     V     + A E   M+++IDDI
Sbjct:  372 KTVSILCRGANLLTLEEAERSLHDALCVIRCLVKQRALIAGGGSPEIEAAQRLLEHARQLEGREAICIRAF---------------------SEALEIIPVTLAENAGLNAIQVVTELRSRHANGEKT-AGINVRKGIVTNILEENVLQPLLVNISAIQLAAETTKMIMKIDDI 523          
BLAST of CX069699 vs. ExPASy Swiss-Prot
Match: TCPD_ASHGO (T-complex protein 1 subunit delta OS=Ashbya gossypii GN=CCT4 PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.649e-17
Identity = 55/169 (32.54%), Postives = 88/169 (52.07%), Query Frame = 3
Query:   42 LLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWLFRRFCYSSA*HPCFIIVKQWPYEAAAIAFEAIPRTLAQNCGVNVIRTMTALQGKHANGENAWIGIDGNTGAISDMKEGKIWDAYNVKAQTFKTAIEAACMLLRIDDI 548
            ++RGA+  +L+E ER+L DA+ V R ++K   L+ GGGA E+ VS T+ ++S +++G+E ++++ F                     A A E IP TLA+N G+N I+ +T L+ +H +GE    GI       ++  +  I     V       A E    +LRIDDI
Sbjct:  379 IVRGANNVVLDETERSLHDALCVIRCLVKERALIAGGGAPEIEVSRTIMRESRAMQGVEAFVWQEF---------------------AEALEVIPTTLAENAGLNSIKVVTELRSRHESGETN-AGISVRRSGTTNTYDEHILQPVLVSTSAITLAAECVKSILRIDDI 525          
BLAST of CX069699 vs. ExPASy Swiss-Prot
Match: THSB_DESMO (Thermosome subunit beta (Fragment) OS=Desulfurococcus mobilis GN=thsB PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.813e-17
Identity = 48/178 (26.97%), Postives = 96/178 (53.93%), Query Frame = 3
Query:    3 FIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWLFRRFCYSSA*HPCFIIVKQWPYEAAAIAFEAIPRTLAQNCGVNVIRTMTALQGKHANGENAWIGIDGNTGAISDMKEGKIWDAYNVKAQTFKTAIEAACMLLR 536
            FI  CK+P++ ++++RG  + L++E ER+++DA+S   + +++ K++PGGGA E+ ++  +++ ++ + G E                     Q   EA A A E +  TL +N G++ I  +  L+  H   +  ++ ID  TG + +M+E  + +  ++ A   K   EAA +++R
Sbjct:  346 FIEGCKNPRSVSIVIRGGLERLVDEAERSIRDALSAVADALRDGKVIPGGGAAEIELAKHIRRLATRVGGKE---------------------QLAIEAFAKALEGLAVTLVENAGLDPIDMVMKLRAAHEREDGKYLSIDLATGDLVNMREKGVIEPVSILANAIKAGTEAATIIMR 502          
The following BLAST results are available for this feature:
BLAST of CX069699 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 142
Match NameE-valueIdentityDescription
TCPB_RAT7.402e-1829.89T-complex protein 1 subunit beta OS=Rattus norvegi... [more]
TCPB_CAEEL7.402e-1830.05T-complex protein 1 subunit beta OS=Caenorhabditis... [more]
TCPB_BOVIN7.402e-1829.89T-complex protein 1 subunit beta OS=Bos taurus GN=... [more]
THSG_SULSO9.668e-1832.80Thermosome subunit gamma OS=Sulfolobus solfataricu... [more]
THS2_HALVO9.668e-1830.34Thermosome subunit 2 OS=Halobacterium volcanii GN=... [more]
TCPB_MACFA1.263e-1729.89T-complex protein 1 subunit beta OS=Macaca fascicu... [more]
TCPB_HUMAN1.263e-1729.89T-complex protein 1 subunit beta OS=Homo sapiens G... [more]
TCPD_SCHPO1.649e-1732.18T-complex protein 1 subunit delta OS=Schizosacchar... [more]
TCPD_ASHGO1.649e-1732.54T-complex protein 1 subunit delta OS=Ashbya gossyp... [more]
THSB_DESMO2.813e-1726.97Thermosome subunit beta (Fragment) OS=Desulfurococ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_12C05_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-12C05-F10-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069699 ID=CX069699; Name=CX069699; organism=Citrus sinensis; type=EST; length=840bp
CATTCATTGTTGATTGCAAAGATCCAAAAGCTTGTACTGTACTCTTAAGA
GGTGCTAGTAAGGATCTCCTGAATGAAGTGGAAAGGAATTTGCAGGATGC
AATGTCTGTGGCAAGAAACATAATCAAGAATCCAAAACTAGTACCTGGTG
GTGGGGCTACAGAATTAACAGTGTCTGCCACTCTAAAACAAAAGAGTTCC
TCAATCGAAGGCATCGAAAAGTGGCTTTTCCGCCGTTTTTGTTATTCATC
AGCCTGACATCCATGCTTCATCATTGTAAAACAGTGGCCTTACGAAGCTG
CTGCTATTGCTTTTGAGGCTATTCCAAGAACTTTGGCTCAGAATTGTGGC
GTTAATGTAATTCGGACTATGACTGCTCTGCAAGGAAAACATGCAAATGG
TGAAAATGCATGGATCGGCATAGATGGAAACACTGGTGCAATTTCTGACA
TGAAAGAGGGGAAGATCTGGGATGCATATAATGTGAAAGCACAGACATTT
AAGACAGCAATTGAAGCTGCTTGCATGCTTCTGAGGATTGATGACATTGT
CAGTGGAATTAAGAAGAAACAGGCCCCTGGCTCAGGCCAAGCTCCATCGA
AGCCCCAGATTGAGACGGAGGCAGATGCAGATAGTGAGCAAATACTCCCT
GATTAGACAATGTTATTGTCAACGACTATGCAGTTTAATTATTTGAAAAA
ATGTTGGTTTATTGTTCTGTTGGCGGTCTAATGATTTTGCTGAGCTTTTC
CTCCAAATTTTGTGATATTGCGCCAATGTTTTAGCCATTGTAGACAAACT
GGGAAGCTGTGATATGCTCTGCAATATATATATATATTTT
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