CX069698

Overview
NameCX069698
Unique NameCX069698
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length856
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX069698 vs. ExPASy Swiss-Prot
Match: TCPG_THAWE (T-complex protein 1 subunit gamma OS=Thalassiosira weissflogii PE=2 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 1.321e-46
Identity = 101/196 (51.53%), Postives = 129/196 (65.82%), Query Frame = -3
Query:  306 DPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWLFRRFCYSSA*HPCFIIVKQWPYEAAAIAFEAIPRTLAQNCGVNVIRTMTALQGKHA----------NG---ENAWIGIDGNTGAISDMKEGKIWDAYNVKAQTFKTAIEAACMLLRIDDIVSGIKKK 854
            DPKACT++LRG SKD+LNE+ERNL DAM V RN++ +P+L+PGGGATE+ VS  L++    +EGI+                     Q P+ A   A E IPRTLAQNCGV+VIRT+T L+ KHA          NG   +  W GIDG TG + DM+E  +W+ ++VK QT KTA+E+ACM+LRIDDIVSG KKK
Sbjct:  383 DPKACTIILRGGSKDVLNEIERNLTDAMQVVRNVVFDPRLLPGGGATEMAVSVGLRKAGLKLEGIQ---------------------QGPFLAVGDAMEVIPRTLAQNCGVSVIRTVTQLRAKHAAAYEDSETSGNGTFPKCNW-GIDGTTGKLVDMEEFGVWEPFSVKVQTIKTAVESACMILRIDDIVSGSKKK 556          
BLAST of CX069698 vs. ExPASy Swiss-Prot
Match: TCPG_DICDI (T-complex protein 1 subunit gamma OS=Dictyostelium discoideum GN=cct3 PE=1 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 3.842e-46
Identity = 95/185 (51.35%), Postives = 123/185 (66.49%), Query Frame = -3
Query:  306 DPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWLFRRFCYSSA*HPCFIIVKQWPYEAAAIAFEAIPRTLAQNCGVNVIRTMTALQGKHANG--ENAWIGIDGNTGAISDMKEGKIWDAYNVKAQTFKTAIEAACMLLRIDDIVSGIKKK 854
            +PKACT+LLRGASKD+LNEVERNL DA++VARNI+ +P+LVPGGGA E+ +S  L +KS SIEG+                      Q PY+A A + E IP+ LAQNCG N ++ +T L+ KHA    EN   G+DG+ G I DMK+  IWD ++VK QT KTAIE+AC +LR+D I S   K+
Sbjct:  367 EPKACTILLRGASKDILNEVERNLTDALNVARNIVLDPRLVPGGGAIEMALSQALSEKSKSIEGLH---------------------QLPYKALAQSLECIPKILAQNCGANTVKLLTELRAKHATNPTENYTYGVDGDNGTIVDMKQLGIWDTHSVKVQTLKTAIESACTMLRVDHIASAASKQ 530          
BLAST of CX069698 vs. ExPASy Swiss-Prot
Match: TCPG_YEAST (T-complex protein 1 subunit gamma OS=Saccharomyces cerevisiae GN=CCT3 PE=1 SV=2)

HSP 1 Score: 184.111 bits (466), Expect = 8.560e-46
Identity = 94/184 (51.09%), Postives = 125/184 (67.93%), Query Frame = -3
Query:  303 DPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWLFRRFCYSSA*HPCFIIVKQWPYEAAAIAFEAIPRTLAQNCGVNVIRTMTALQGKHANGENAWIGIDGNTGAISDMKEGKIWDAYNVKAQTFKTAIEAACMLLRIDDIVSGIKKKQ 854
            +PKACT++LRG SKD+LNE++RNLQDAM+VARN++ +P L PGGGATE+ VS  L +K+  +EGI+                     QWPY+A A A E IPRTL QN G + IR ++ L+ KHA G N   GIDG+ G I DM    IW+   +K Q+ KTAIE+AC+LLR+DDIVSG++K++
Sbjct:  373 EPKACTIMLRGGSKDILNEIDRNLQDAMAVARNVMLSPSLSPGGGATEMAVSVKLAEKAKQLEGIQ---------------------QWPYQAVADAMECIPRTLIQNAGGDPIRLLSQLRAKHAQG-NFTTGIDGDKGKIVDMVSYGIWEPEVIKQQSVKTAIESACLLLRVDDIVSGVRKQE 534          
BLAST of CX069698 vs. ExPASy Swiss-Prot
Match: TCPG_DROME (T-complex protein 1 subunit gamma OS=Drosophila melanogaster GN=Cctgamma PE=2 SV=2)

HSP 1 Score: 175.637 bits (444), Expect = 3.044e-43
Identity = 101/199 (50.75%), Postives = 122/199 (61.31%), Query Frame = -3
Query:  270 DPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWLFRRFCYSSA*HPCFIIVKQWPYEAAAIAFEAIPRTLAQNCGVNVIRTMTALQGKHA----NGENAWIGIDGNTGAISDMKEGKIWDAYNVKAQTFKTAIEAACMLLRIDDIVSGIKKKQAPGSGQAPSKP 854
            +PKACT+LLRGASKD+LNE ERNLQDA+ VARN++  P+LV GGGA E+  S  L +K   ++G                         PY A A A E IPRTLAQNCG N IR +TAL+ KHA    +G  AW GIDG +G I DM    IW+   VK QT+KTA+E A +LLRIDDIVSG KK+     G  P+ P
Sbjct:  370 EPKACTILLRGASKDILNETERNLQDALHVARNLVLEPRLVAGGGAVEMAASQLLTRK--QVKG-------------------------PYTAVAHALEIIPRTLAQNCGANTIRALTALRAKHASHTGDGVCAW-GIDGESGEIVDMNVKNIWEPLAVKLQTYKTAVETAILLLRIDDIVSGSKKR----GGNEPTNP 536          
BLAST of CX069698 vs. ExPASy Swiss-Prot
Match: THS_METTL (Thermosome subunit OS=Methanococcus thermolithotrophicus GN=ths PE=1 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 3.739e-25
Identity = 66/188 (35.11%), Postives = 104/188 (55.32%), Query Frame = -3
Query:  288 PKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWLFRRFCYSSA*HPCFIIVKQWPYEAAAIAFEAIPRTLAQNCGVNVIRTMTALQGKHANGENAWIGIDGNTGAISDMKEGKIWDAYNVKAQTFKTAIEAACMLLRIDDIVSGIKKKQAPGSG 851
            PKA T+L+RG ++ ++ EV R + DA+ V    I++ K+V GGGA E+ ++  L+  +  + G E+   R F                     A A E +PRTLA+N G++ I  +  L+ KHA G NA+ G++  TG + +M E  + +   VK Q  ++A EA  MLLRIDD+++   +K + GSG
Sbjct:  364 PKAVTMLIRGTTEHVIEEVARAVDDAIGVVACTIEDGKIVAGGGAAEIELAMKLRDYAEGVSGREQLAVRAF---------------------ADALEVVPRTLAENAGLDAIEMLVKLRAKHAEGNNAYYGLNVFTGDVENMTENGVVEPLRVKTQAIQSATEATEMLLRIDDVIAA--EKLSGGSG 528          
BLAST of CX069698 vs. ExPASy Swiss-Prot
Match: THSB_ARCFU (Thermosome subunit beta OS=Archaeoglobus fulgidus GN=thsB PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.421e-24
Identity = 68/199 (34.17%), Postives = 107/199 (53.77%), Query Frame = -3
Query:  267 DPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWLFRRFCYSSA*HPCFIIVKQWPYEAAAIAFEAIPRTLAQNCGVNVIRTMTALQGKHANGENAWIGIDGNTGAISDMKEGKIWDAYNVKAQTFKTAIEAACMLLRIDDIVSG---IKKKQAPGSGQAPSKPQ 854
            +PKA T+L+RG ++ ++ E+ R ++DA+      +++ K+V G GA E+ VS  L++ + S+ G E                     Q   EA A A E IPRTLA+N G++ I  +  L+  H  G+  + G+D +TG + DMKE  +++   VK Q   +A E A M+LRIDDI++     K+K   G G  P  P+
Sbjct:  368 NPKAVTILVRGGTEHVVEEIARGIEDAVRAVACAVEDGKVVVGAGAPEIEVSLKLREWAPSLGGRE---------------------QLAVEAFATALEIIPRTLAENAGLDPIDVLVELKAAHEKGQK-YAGVDVDTGKVVDMKERGVFEPLRVKTQAIGSATEVAVMILRIDDIIAAKGLEKEKGGGGEGGMPEMPE 544          
BLAST of CX069698 vs. ExPASy Swiss-Prot
Match: THS1_HALVO (Thermosome subunit 1 OS=Halobacterium volcanii GN=cct1 PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 3.165e-24
Identity = 63/178 (35.39%), Postives = 105/178 (58.99%), Query Frame = -3
Query:  321 DPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWLFRRFCYSSA*HPCFIIVKQWPYEAAAIAFEAIPRTLAQNCGVNVIRTMTALQGKHANGENAWIGIDGNTGAISDMKEGKIWDAYNVKAQTFKTAIEAACMLLRIDDIVS 854
            D K+ T++LRG ++ +++E+ER ++D++ V R  +++ K++PGGGA E  +S  L++ + S+ G E                     Q   EA A A + IPRTLA+N G++ I ++  L+ +H  GE A  G+D  TG + DM+E  + +   VK Q  ++A EAA M+LRIDD+++
Sbjct:  366 DAKSVTLILRGGTEHVVDELERAIEDSLGVVRTTLEDGKVLPGGGAPETELSLQLREFADSVGGRE---------------------QLAVEAFAEALDIIPRTLAENAGLDPIDSLVDLRSRHDGGEFA-AGLDAYTGEVIDMEEEGVVEPLRVKTQAIESATEAAVMILRIDDVIA 521          
BLAST of CX069698 vs. ExPASy Swiss-Prot
Match: THS_PYRHO (Thermosome subunit OS=Pyrococcus horikoshii GN=ths PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 5.399e-24
Identity = 67/204 (32.84%), Postives = 110/204 (53.92%), Query Frame = -3
Query:  243 DPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWLFRRFCYSSA*HPCFIIVKQWPYEAAAIAFEAIPRTLAQNCGVNVIRTMTALQGKHANGENAWIGIDGNTGAISDMKEGKIWDAYNVKAQTFKTAIEAACMLLRIDDIVSGIKKKQAPGSGQAPSKPQIETEADAD 854
            +PKA T+L+RG ++ +++EVER L+DA+ V ++I+++ K++ GGGA+E+ +S  L + +  + G E                     Q   EA A A + IPRTLA+N G++ I T+  +   H   +   IGID   G  +DM E  + +   VK Q  K+A EAA M+LRIDD+++  K ++     +     +    +D D
Sbjct:  368 NPKAVTILIRGGTEHVVDEVERALEDAIKVVKDILEDGKIIAGGGASEIELSIKLDEYAKEVGGKE---------------------QLAIEAFAEALKVIPRTLAENAGLDPIETLVKVIAAHKE-KGQTIGIDVYEGEPADMMERGVIEPVRVKKQAIKSASEAAIMILRIDDVIAASKLEKEKEGEKGGGSEEFSGSSDLD 549          
BLAST of CX069698 vs. ExPASy Swiss-Prot
Match: THS_PYRAB (Thermosome subunit OS=Pyrococcus abyssi GN=ths PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 5.399e-24
Identity = 69/205 (33.66%), Postives = 110/205 (53.66%), Query Frame = -3
Query:  243 DPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWLFRRFCYSSA*HPCFIIVKQWPYEAAAIAFEAIPRTLAQNCGVNVIRTMTALQGKHANGENAWIGIDGNTGAISDMKEGKIWDAYNVKAQTFKTAIEAACMLLRIDDIVSGIK-KKQAPGSGQAPSKPQIETEADAD 854
            +PKA T+L+RG ++ +++EVER L+DA+ V ++I+++ K++ GGGA E+ +S  L + +  + G E                     Q   EA A A + IPRTLA+N G++ I T+  +   H   +   IGID   G  +DM E  + +   VK Q  K+A EAA M+LRIDD+++  K +K+  G           + +D D
Sbjct:  368 NPKAVTILIRGGTEHVVDEVERALEDAVKVVKDILEDGKIIAGGGAAEIELSIKLDEYAKEVGGKE---------------------QLAIEAFAEALKVIPRTLAENAGLDPIETLVKVIAAHKE-KGPTIGIDVYEGEPADMMERGVIEPVRVKKQAIKSASEAAIMILRIDDVIAAQKLEKEKEGEKGGGGSEDFSSSSDLD 550          
BLAST of CX069698 vs. ExPASy Swiss-Prot
Match: THSB_AERPE (Thermosome subunit beta OS=Aeropyrum pernix GN=thsB PE=3 SV=2)

HSP 1 Score: 111.694 bits (278), Expect = 5.399e-24
Identity = 65/184 (35.33%), Postives = 97/184 (52.72%), Query Frame = -3
Query:  303 DPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWLFRRFCYSSA*HPCFIIVKQWPYEAAAIAFEAIPRTLAQNCGVNVIRTMTALQGKHANGENAWIGIDGNTGAISDMKEGKIWDAYNVKAQTFKTAIEAACMLLRIDDIVSGIKKKQ 854
            +PK+ T+LLRG  + L++E ER+L DA+SV  + I + K+V GGGA E  V+  L + +S + G                       Q   EA A A EA+P+ LA N G + I  +  L+  H   EN W G+D +TG I DM    + +   VK    K A E A ++LRIDD+++  K+++
Sbjct:  375 NPKSVTILLRGGFERLVDEAERSLHDALSVVADAIMDGKIVAGGGAVEAEVAKVLYEYASKLPG---------------------KTQLAVEAFARAVEALPQALAHNAGHDPIEVLVKLRSAHEKPENKWYGVDLDTGEIVDMWSRGVLEPMRVKLNALKAATEVASLILRIDDVIAARKEEE 537          
The following BLAST results are available for this feature:
BLAST of CX069698 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 139
Match NameE-valueIdentityDescription
TCPG_THAWE1.321e-4651.53T-complex protein 1 subunit gamma OS=Thalassiosira... [more]
TCPG_DICDI3.842e-4651.35T-complex protein 1 subunit gamma OS=Dictyostelium... [more]
TCPG_YEAST8.560e-4651.09T-complex protein 1 subunit gamma OS=Saccharomyces... [more]
TCPG_DROME3.044e-4350.75T-complex protein 1 subunit gamma OS=Drosophila me... [more]
THS_METTL3.739e-2535.11Thermosome subunit OS=Methanococcus thermolithotro... [more]
THSB_ARCFU1.421e-2434.17Thermosome subunit beta OS=Archaeoglobus fulgidus ... [more]
THS1_HALVO3.165e-2435.39Thermosome subunit 1 OS=Halobacterium volcanii GN=... [more]
THS_PYRHO5.399e-2432.84Thermosome subunit OS=Pyrococcus horikoshii GN=ths... [more]
THS_PYRAB5.399e-2433.66Thermosome subunit OS=Pyrococcus abyssi GN=ths PE=... [more]
THSB_AERPE5.399e-2435.33Thermosome subunit beta OS=Aeropyrum pernix GN=ths... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS08_12C05_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-12C05-F10-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069698 ID=CX069698; Name=CX069698; organism=Citrus sinensis; type=EST; length=856bp
CTTTTTTTTTTTTTTTATCCAAAAACAGGATGTTAAAATATATATATATA
TTGCAGAGCATATCACAGCTTCCCAGTTTGTCTACAATGGCTAAAACATT
GGCGCAATATCACAAAATTTGGAGGAAAAGCTCAGCAAAATCATTAGACC
GCCAACAGAACAATAAACCAACATTTTTTCAAATAATTAAACTGCATAGT
CGTTGACAATAACATTGTCTAATCAGGGAGTATTTGCTCACTATCTGCAT
CTGCCTCCGTCTCAATCTGGGGCTTCGATGGAGCTTGGCCTGAGCCAGGG
GCCTGTTTCTTCTTAATTCCACTGACAATGTCATCAATCCTCAGAAGCAT
GCAAGCAGCTTCAATTGCTGTCTTAAATGTCTGTGCTTTCACATTATATG
CATCCCAGATCTTCCCCTCTTTCATGTCAGAAATTGCACCAGTGTTTCCA
TCTATGCCGATCCATGCATTTTCACCATTTGCATGTTTTCCTTGCAGAGC
AGTCATAGTCCGAATTACATTAACGCCACAATTCTGAGCCAAAGTTCTTG
GAATAGCCTCAAAAGCAATAGCAGCAGCTTCGTAAGGCCACTGTTTTACA
ATGATGAAGCATGGATGTCAGGCTGATGAATAACAAAAACGGCGGAAAAG
CCACTTTTCGATGCCTTCGATTGAGGAACTCTTTTGTTTTAGAGTGGCAG
ACACTGTTAATTCTGTAGCCCCACCACCAGGTACTAGTTTTGGATTCTTG
ATTATGTTTCTTGCCACAGACATTGCATCCTGCAAATTCCTTTCCACTTC
ATTCAGGAGATCCTTACTAGCACCTCTTAAGAGTACAGTACAAGCTTTTG
GATCTT
back to top