CX069698

Overview
NameCX069698
Unique NameCX069698
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length856
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX069698 vs. ExPASy Swiss-Prot
Match: TCPQ_DICDI (T-complex protein 1 subunit theta OS=Dictyostelium discoideum GN=cct8 PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.288e-13
Identity = 49/189 (25.93%), Postives = 90/189 (47.62%), Query Frame = -3
Query:  273 TVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWLFRRFCYSSA*HPCFIIVKQWPYEAAAIAFEAIPRTLAQNCGVNVIRTMTALQGKHANGENAWIGIDGNTGAISDMKEGKIWDAYNVKAQTFKTAIEAACMLLRIDDIVSGIKKKQAPGSGQAPSK 839
            T+++RG++ ++L+++ER + D ++V + + K+ + + G GA E+  S  L+  + +  G+ ++  R++                     A AFE IPRTLA+  G +  + ++ +   H  G N   G+D  +G    + E  + DA+  K    K A   A  +LR+D I+        P  G  P K
Sbjct:  368 TIVVRGSTNNILDDIERAIDDGVNVFKGMCKDGRFLAGAGAFEIEASRKLQAFADATPGLSQYSIRQY---------------------AEAFEIIPRTLAETSGHDSSKAISNIYAAHTKG-NTNYGLDIESGQPKSVLEMDVLDAFASKLFAIKLATNTANTVLRVDQII-----MSKPAGGPKPPK 529          
BLAST of CX069698 vs. ExPASy Swiss-Prot
Match: TCPB_SCHPO (Probable T-complex protein 1 subunit beta OS=Schizosaccharomyces pombe GN=cct2 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 5.600e-13
Identity = 49/175 (28.00%), Postives = 84/175 (48.00%), Query Frame = -3
Query:  324 KACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWLFRRFCYSSA*HPCFIIVKQWPYEAAAIAFEAIPRTLAQNCGVNVIRTMTALQGKHANGENAWIGIDGNTGAISDMKEGKIWDAYNVKAQTFKTAIEAACMLLRIDDIV 848
            +ACT++LRGA+  LL+E ER + DA++V    +   ++  GGG  E+ ++  +++ ++   G                      K     A A A   +P  LA N G +    +  L+  H +G N  +G+D + G I+DM+   I +A  +K     +  E A +LLR+D I+
Sbjct:  365 EACTIVLRGATHQLLDESERAIHDALAVLSQTVAESRVTLGGGCAEMLMAKAVEEAATHEPG---------------------KKAVAVSAFAKALSQLPTILADNAGFDSSELVAQLKAAHYDG-NDTMGLDMDEGEIADMRAKGILEALKLKQAVVSSGSEGAQLLLRVDTIL 517          
BLAST of CX069698 vs. ExPASy Swiss-Prot
Match: TCPW_HUMAN (T-complex protein 1 subunit zeta-2 OS=Homo sapiens GN=CCT6B PE=1 SV=4)

HSP 1 Score: 74.3294 bits (181), Expect = 9.552e-13
Identity = 48/177 (27.12%), Postives = 85/177 (48.02%), Query Frame = -3
Query:  324 DPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWLFRRFCYSSA*HPCFIIVKQWPYEAAAIAFEAIPRTLAQNCGVNVIRTMTALQGKHANGENAWIGIDGNTGAISDMKEGKIWDAYNVKAQTFKTAIEAACMLLRIDDIV 854
            +P + T+L++G +K  L +V+  ++D +   +N I++  +VPG GA E+ ++  L    +SI+G  +                        +A A A   IP+ LAQN G +   T+  +Q +H   +   +G+D NTG      +  +WD Y VK Q   +    A  +L +D+I+
Sbjct:  368 NPCSVTLLVKGPNKHTLTQVKDAIRDGLRAIKNAIEDGCMVPGAGAIEVAMAEALVTYKNSIKGRAR---------------------LGVQAFADALLIIPKVLAQNAGYDPQETLVKVQAEHVESKQL-VGVDLNTGEPMVAADAGVWDNYCVKKQLLHSCTVIATNILLVDEIM 522          
BLAST of CX069698 vs. ExPASy Swiss-Prot
Match: TCPZ_MOUSE (T-complex protein 1 subunit zeta OS=Mus musculus GN=Cct6a PE=1 SV=3)

HSP 1 Score: 73.9442 bits (180), Expect = 1.248e-12
Identity = 47/177 (26.55%), Postives = 86/177 (48.59%), Query Frame = -3
Query:  324 DPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWLFRRFCYSSA*HPCFIIVKQWPYEAAAIAFEAIPRTLAQNCGVNVIRTMTALQGKHANGENAWIGIDGNTGAISDMKEGKIWDAYNVKAQTFKTAIEAACMLLRIDDIV 854
            +P++ T+L++G +K  L +++  ++D +   +N I +  +VPG GA E+ ++  L +   S++G                       Q   +A A A   IP+ LAQN G ++  T+  +Q +H+      +G+D +TG      E  +WD Y VK Q   +    A  +L +D+I+
Sbjct:  368 NPRSVTLLVKGPNKHTLTQIKDAIRDGLRAVKNAIDDGCVVPGAGAVEVALAEALIKYKPSVKG---------------------RAQLGVQAFADALLIIPKVLAQNSGFDLQETLVKVQAEHSE-SGQLVGVDLSTGEPMVAAEMGVWDNYCVKKQLLHSCTVIATNILLVDEIM 522          
BLAST of CX069698 vs. ExPASy Swiss-Prot
Match: TCPA_SCHPO (T-complex protein 1 subunit alpha OS=Schizosaccharomyces pombe GN=cct1 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.779e-12
Identity = 51/182 (28.02%), Postives = 87/182 (47.80%), Query Frame = -3
Query:  333 ACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWLFRRFCYSSA*HPCFIIVKQWPYEAAAIAFEAIPRTLAQNCGVNVIRTMTALQGKHANGENAWI-----------GIDGNTGAISDMKEGKIWDAYNVKAQTFKTAIEAACMLLRID 845
            + +++LRG ++  L+E+ER++ D++SV +  +++ K+VPGGGA E  +S  L+  ++S+   E+     F                     A A   IPRTLA N   +       L+  HA  +NA +           G+D   G I D  +  + +    K ++ K+A+EA   +LRID
Sbjct:  377 SASIVLRGPNEYSLDEMERSMHDSLSVVKRTLESGKVVPGGGAVETALSIYLENFATSLGSREQLAIAEF---------------------AQALLIIPRTLAVNAAKDSTELTAKLRAYHAASQNAEVTDVKKRGYKNYGLDLLNGVIRDNVKAGVLEPSMSKLKSLKSAVEACIAILRID 537          
BLAST of CX069698 vs. ExPASy Swiss-Prot
Match: TCPA_ENCCU (T-complex protein 1 subunit alpha OS=Encephalitozoon cuniculi GN=TCP1 PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.056e-11
Identity = 49/180 (27.22%), Postives = 93/180 (51.67%), Query Frame = -3
Query:  324 KACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWLFRRFCYSSA*HPCFIIVKQWPYEAAAIAFEAIPRTLAQNCGVN----VIRTMTALQGKHANGENA-WIGIDGNTGAISDMKEGKIWDAYNVKAQTFKTAIEAACMLLRIDDIV 848
            K  +++LRGA+  LL+E++R++ DA+ V +  +++  +VPGGGA E  +S  L++ + ++   E     R+                     A +  +IP+ L+ N G++    V   +++   + AN   + ++GID  +G I D  E  I +    K ++ K A EAA  +LRI++++
Sbjct:  373 KMASIILRGANCQLLDEMQRSVHDAVCVLKRTLESNSVVPGGGAVECALSLMLEKFAFTVNSKEHVAIHRY---------------------AESLLSIPKILSTNAGLDSNELVANLLSSQSREMANSSGSKFLGIDVTSGKIQDNFEFGIIEPSVNKMKSLKAATEAAISILRINEVI 531          
BLAST of CX069698 vs. ExPASy Swiss-Prot
Match: TCPA_DROME (T-complex protein 1 subunit alpha OS=Drosophila melanogaster GN=T-cp1 PE=2 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 1.056e-11
Identity = 46/181 (25.41%), Postives = 85/181 (46.96%), Query Frame = -3
Query:  324 ACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWLFRRFCYSSA*HPCFIIVKQWPYEAAAIAFEAIPRTLAQNCGVNVIRTMTALQGKHANGEN-------AWIGIDGNTGAISDMKEGKIWDAYNVKAQTFKTAIEAACMLLRIDDIV 845
            A +++LRG +    +E+ER++ DA+ V + ++++ K+V GGG  E  +S  L+  ++S+   E+     F                     A +   IP+TL+ N   +    +  L+  H + +         W G+D   G + D K+  + +    K ++ K A EAA  +LRIDD++
Sbjct:  375 AASIILRGPNDFYCDEMERSVHDALCVVKRVLESKKVVAGGGCVEAALSIYLENFATSLASREQLAIAEF---------------------AKSLLVIPKTLSVNAAKDATDLVAKLRSYHNSSQTKPERSDLKWTGLDLIEGVVRDNKKAGVLEPAMSKIKSLKFATEAAITILRIDDMI 534          
BLAST of CX069698 vs. ExPASy Swiss-Prot
Match: TCPQ_CANAL (T-complex protein 1 subunit theta OS=Candida albicans GN=CCT8 PE=3 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 3.073e-11
Identity = 49/190 (25.79%), Postives = 88/190 (46.32%), Query Frame = -3
Query:  279 KACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWLFRRFCYSSA*HPCFIIVKQWPYEAAAIAFEAIPRTLAQNCGVNVIRTMTALQGKHANGENAWIGIDGNTGAISDMKEGKIWDAYNVKAQTFKTAIEAACMLLRIDDIVSGIKKKQAPGSGQAP 848
            +  T+++RGA+++ L+++ER + D ++  + +IK+ +L+PG GA E+ +   +    S+  G+ +   + F                     A AFE IPR LA+  G +    ++ L   HA       GID ++G ++D     + D    K      A++A   +L ID I+   K+   P   Q P
Sbjct:  368 RTATIVVRGATQNNLDDIERAIDDGVNSIKGLIKDNRLLPGAGAVEIELMKRITAYQST-PGLLQLAIKSF---------------------AKAFEVIPRVLAETSGHDSSEILSKLHAAHAEDTGLRAGIDIDSGEVADT---AVLDILATKKSAIDLAVDATNTILSIDQIIMA-KRAGGPVMPQQP 531          
BLAST of CX069698 vs. ExPASy Swiss-Prot
Match: TCPA_AMBME (T-complex protein 1 subunit alpha (Fragment) OS=Ambystoma mexicanum PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.241e-11
Identity = 46/169 (27.22%), Postives = 80/169 (47.34%), Query Frame = -3
Query:  324 LLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWLFRRFCYSSA*HPCFIIVKQWPYEAAAIAFEAIPRTLAQNCGVNVIRTMTALQGKHANGE-------NAWIGIDGNTGAISDMKEGKIWDAYNVKAQTFKTAIEAACMLLRIDDIV 809
            + +E+ER++ DA+ V + ++++  +VPGGGA E  +S  L+  ++S+   E+     F                     A +   IP+TLA N   +    +  L+  H   +         WIG+D   G   D K+  +++   VK ++ K A EAA  +LRIDD++
Sbjct:    2 MCDEMERSVHDALCVVKRVLESKSVVPGGGAVEAALSIYLENYATSMGSREQLAIAEF---------------------ARSLLVIPKTLAVNRAQDSTDLVAKLRAFHNEAQVNPDRKNLKWIGLDLVNGKARDNKQAGVFEPTMVKTKSLKFATEAAITILRIDDLI 149          
The following BLAST results are available for this feature:
BLAST of CX069698 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 139
Match NameE-valueIdentityDescription
TCPQ_DICDI4.288e-1325.93T-complex protein 1 subunit theta OS=Dictyostelium... [more]
TCPB_SCHPO5.600e-1328.00Probable T-complex protein 1 subunit beta OS=Schiz... [more]
TCPW_HUMAN9.552e-1327.12T-complex protein 1 subunit zeta-2 OS=Homo sapiens... [more]
TCPZ_MOUSE1.248e-1226.55T-complex protein 1 subunit zeta OS=Mus musculus G... [more]
TCPA_SCHPO2.779e-1228.02T-complex protein 1 subunit alpha OS=Schizosacchar... [more]
TCPA_ENCCU1.056e-1127.22T-complex protein 1 subunit alpha OS=Encephalitozo... [more]
TCPA_DROME1.056e-1125.41T-complex protein 1 subunit alpha OS=Drosophila me... [more]
TCPQ_CANAL3.073e-1125.79T-complex protein 1 subunit theta OS=Candida albic... [more]
TCPA_AMBME5.241e-1127.22T-complex protein 1 subunit alpha (Fragment) OS=Am... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_12C05_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-12C05-F10-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069698 ID=CX069698; Name=CX069698; organism=Citrus sinensis; type=EST; length=856bp
CTTTTTTTTTTTTTTTATCCAAAAACAGGATGTTAAAATATATATATATA
TTGCAGAGCATATCACAGCTTCCCAGTTTGTCTACAATGGCTAAAACATT
GGCGCAATATCACAAAATTTGGAGGAAAAGCTCAGCAAAATCATTAGACC
GCCAACAGAACAATAAACCAACATTTTTTCAAATAATTAAACTGCATAGT
CGTTGACAATAACATTGTCTAATCAGGGAGTATTTGCTCACTATCTGCAT
CTGCCTCCGTCTCAATCTGGGGCTTCGATGGAGCTTGGCCTGAGCCAGGG
GCCTGTTTCTTCTTAATTCCACTGACAATGTCATCAATCCTCAGAAGCAT
GCAAGCAGCTTCAATTGCTGTCTTAAATGTCTGTGCTTTCACATTATATG
CATCCCAGATCTTCCCCTCTTTCATGTCAGAAATTGCACCAGTGTTTCCA
TCTATGCCGATCCATGCATTTTCACCATTTGCATGTTTTCCTTGCAGAGC
AGTCATAGTCCGAATTACATTAACGCCACAATTCTGAGCCAAAGTTCTTG
GAATAGCCTCAAAAGCAATAGCAGCAGCTTCGTAAGGCCACTGTTTTACA
ATGATGAAGCATGGATGTCAGGCTGATGAATAACAAAAACGGCGGAAAAG
CCACTTTTCGATGCCTTCGATTGAGGAACTCTTTTGTTTTAGAGTGGCAG
ACACTGTTAATTCTGTAGCCCCACCACCAGGTACTAGTTTTGGATTCTTG
ATTATGTTTCTTGCCACAGACATTGCATCCTGCAAATTCCTTTCCACTTC
ATTCAGGAGATCCTTACTAGCACCTCTTAAGAGTACAGTACAAGCTTTTG
GATCTT
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