CX069698

Overview
NameCX069698
Unique NameCX069698
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length856
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX069698 vs. ExPASy Swiss-Prot
Match: THSA_THEK1 (Thermosome subunit alpha OS=Thermococcus sp. (strain KS-1) GN=thsA PE=1 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 1.126e-21
Identity = 63/195 (32.31%), Postives = 103/195 (52.82%), Query Frame = -3
Query:  270 DPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWLFRRFCYSSA*HPCFIIVKQWPYEAAAIAFEAIPRTLAQNCGVNVIRTMTALQGKHANGENAWIGIDGNTGAISDMKEGKIWDAYNVKAQTFKTAIEAACMLLRIDDIVSGIKKKQAPGSGQAPSKP 854
            +PKA T+L+RG ++ +++EVER L+DA+ V ++++++  ++P GGA E+ ++  L + +  + G E      F                     A A + IP+TLA+N G++ +  +  +  +H N     IGID   G  +DM E  I +   VK Q  K+A EAA M+LRIDD+++   K   P  GQ    P
Sbjct:  368 NPKAVTILIRGGTEHVIDEVERALEDAVKVVKDVMEDGAVLPAGGAPEIELAIRLDEYAKQVGGKEALAIENF---------------------ADALKIIPKTLAENAGLDTVEMLVKVISEHKN-RGLGIGIDVFEGKPADMLEKGIIEPLRVKKQAIKSASEAAIMILRIDDVIAA--KATKPEGGQGGGMP 538          
BLAST of CX069698 vs. ExPASy Swiss-Prot
Match: THSA_PYRKO (Thermosome subunit alpha OS=Pyrococcus kodakaraensis GN=thsA PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 1.126e-21
Identity = 63/195 (32.31%), Postives = 103/195 (52.82%), Query Frame = -3
Query:  270 DPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWLFRRFCYSSA*HPCFIIVKQWPYEAAAIAFEAIPRTLAQNCGVNVIRTMTALQGKHANGENAWIGIDGNTGAISDMKEGKIWDAYNVKAQTFKTAIEAACMLLRIDDIVSGIKKKQAPGSGQAPSKP 854
            +PKA T+L+RG ++ +++EVER L+DA+ V ++++++  ++P GGA E+ ++  L + +  + G E      F                     A A + IP+TLA+N G++ +  +  +  +H N     IGID   G  +DM E  I +   VK Q  K+A EAA M+LRIDD+++   K   P  GQ    P
Sbjct:  368 NPKAVTILIRGGTEHVIDEVERALEDAVKVVKDVMEDGAVLPAGGAPEIELAIRLDEYAKQVGGKEALAIENF---------------------ADALKIIPKTLAENAGLDTVEMLVKVISEHKN-RGLGIGIDVFEGKPADMLEKGIIEPLRVKKQAIKSASEAAIMILRIDDVIAA--KATKPEGGQGGGMP 538          
BLAST of CX069698 vs. ExPASy Swiss-Prot
Match: THS_DESSY (Thermosome subunit OS=Desulfurococcus sp. (strain SY) GN=ths PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.470e-21
Identity = 61/181 (33.70%), Postives = 100/181 (55.25%), Query Frame = -3
Query:  312 DPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWLFRRFCYSSA*HPCFIIVKQWPYEAAAIAFEAIPRTLAQNCGVNVIRTMTALQGKHANGENAWIGIDGNTGAISDMKEGKIWDAYNVKAQTFKTAIEAACMLLRIDDIVSGIK 854
            +PKA T+L+RG ++ +++EVER L+DA+ V ++I+++ K++P GGA E+ ++  L + +  + G E                     Q   EA A A + IPRTLA+N G++ + T+  +   H   +   IG+D   G  +DM E  +     V  Q  K+A EAA M+LRIDD+++  K
Sbjct:  368 NPKAVTILIRGGTEHVVDEVERALEDAVKVVKDIVEDGKILPAGGAPEIELAIKLDEYAKEVGGKE---------------------QLAIEAFAEALKVIPRTLAENAGLDPVETLVKVIAAHKE-KGPTIGVDVFEGEPADMMEKGVIAPLRVPKQAIKSASEAAIMILRIDDVIAASK 526          
BLAST of CX069698 vs. ExPASy Swiss-Prot
Match: THSB_PYRKO (Thermosome subunit beta OS=Pyrococcus kodakaraensis GN=thsB PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.470e-21
Identity = 64/194 (32.99%), Postives = 105/194 (54.12%), Query Frame = -3
Query:  273 DPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWLFRRFCYSSA*HPCFIIVKQWPYEAAAIAFEAIPRTLAQNCGVNVIRTMTALQGKHANGENAWIGIDGNTGAISDMKEGKIWDAYNVKAQTFKTAIEAACMLLRIDDIVSGIKKKQAPGSGQAPSK 854
            +PKA T+L+RG ++ +++EVER L+DA+ V ++I+++ K+V  GGA E+ ++  L + +  + G E                     Q   EA A A + IPRTLA+N G++ I T+  +   H   +   IG+D   G  +DM E  +     V  Q  K+A EAA M+LRIDD+++  K ++    G+  S+
Sbjct:  368 NPKAVTILIRGGTEHVVDEVERALEDAVKVVKDIVEDGKIVAAGGAPEIELAIRLDEYAKEVGGKE---------------------QLAIEAFAEALKVIPRTLAENAGLDPIETLVKVIAAHKE-KGPTIGVDVFEGEPADMLERGVIAPVRVPKQAIKSASEAAIMILRIDDVIAASKLEKDKEGGKGGSE 539          
BLAST of CX069698 vs. ExPASy Swiss-Prot
Match: TCPH_PONAB (T-complex protein 1 subunit eta OS=Pongo abelii GN=CCT7 PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.470e-21
Identity = 62/197 (31.47%), Postives = 94/197 (47.72%), Query Frame = -3
Query:  270 KACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWLFRRFCYSSA*HPCFIIVKQWPYEAAAIAFEAIPRTLAQNCGVNVIRTMTALQGKHANGENAWIGIDGNTGAISDMKEGKIWDAYNVKAQTFKTAIEAACMLLRIDDIV----SGIKKKQAPGSGQAPSKP 848
            K CT +LRG ++  + E ER+L DA+ + R  IKN  +V GGGA E+ +S  L+  S +I G ++ L                       A A A E IPR L  N G +    +  L+ +HA G   W G+D N   I+D  E  +W+   V+      A EAAC+++ +D+ +    S +    A G G+   +P
Sbjct:  368 KTCTFILRGGAEQFMEETERSLHDAIMIVRRAIKNDSVVAGGGAIEMELSKYLRDYSRTIPGKQQLLI---------------------GAYAKALEIIPRQLCDNAGFDATNILNKLRARHAQG-GTWYGVDINNEDIADNFEAFVWEPAMVRINALTAASEAACLIVSVDETIKNPRSTVDAPAAAGRGRGRGRP 542          
BLAST of CX069698 vs. ExPASy Swiss-Prot
Match: TCPH_HUMAN (T-complex protein 1 subunit eta OS=Homo sapiens GN=CCT7 PE=1 SV=2)

HSP 1 Score: 103.605 bits (257), Expect = 1.470e-21
Identity = 62/197 (31.47%), Postives = 94/197 (47.72%), Query Frame = -3
Query:  270 KACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWLFRRFCYSSA*HPCFIIVKQWPYEAAAIAFEAIPRTLAQNCGVNVIRTMTALQGKHANGENAWIGIDGNTGAISDMKEGKIWDAYNVKAQTFKTAIEAACMLLRIDDIV----SGIKKKQAPGSGQAPSKP 848
            K CT +LRG ++  + E ER+L DA+ + R  IKN  +V GGGA E+ +S  L+  S +I G ++ L                       A A A E IPR L  N G +    +  L+ +HA G   W G+D N   I+D  E  +W+   V+      A EAAC+++ +D+ +    S +    A G G+   +P
Sbjct:  368 KTCTFILRGGAEQFMEETERSLHDAIMIVRRAIKNDSVVAGGGAIEMELSKYLRDYSRTIPGKQQLLI---------------------GAYAKALEIIPRQLCDNAGFDATNILNKLRARHAQG-GTWYGVDINNEDIADNFEAFVWEPAMVRINALTAASEAACLIVSVDETIKNPRSTVDAPTAAGRGRGRGRP 542          
BLAST of CX069698 vs. ExPASy Swiss-Prot
Match: THS_METJA (Thermosome subunit OS=Methanocaldococcus jannaschii GN=ths PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 3.275e-21
Identity = 62/189 (32.80%), Postives = 98/189 (51.85%), Query Frame = -3
Query:  285 PKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWLFRRFCYSSA*HPCFIIVKQWPYEAAAIAFEAIPRTLAQNCGVNVIRTMTALQGKHANGENAWIGIDGNTGAISDMKEGKIWDAYNVKAQTFKTAIEAACMLLRIDDIVSGIKKKQAPGSGQ 851
            PKA T+L RG+++ ++ EV R + DA+ V +  ++  K+V GGGATE+ ++  L++ + S+ G E+   + F                     A A E IPRTLA+N G++ I  +  L+  H        G+D   G + DM E  + +   VK Q   +A EA+ MLLRIDD+++  K K     G+
Sbjct:  366 PKAVTILARGSTEHVVEEVARAIDDAIGVVKCALEEGKIVAGGGATEIELAKRLRKFAESVAGREQLAVKAF---------------------ADALEVIPRTLAENSGLDPIDMLVKLRAAHEKEGGEVYGLDVFEGEVVDMLEKGVVEPLKVKTQAIDSATEASVMLLRIDDVIAAEKVKGDEKGGE 533          
BLAST of CX069698 vs. ExPASy Swiss-Prot
Match: THSA_SULTO (Thermosome subunit alpha OS=Sulfolobus tokodaii GN=thsA PE=1 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 4.278e-21
Identity = 65/192 (33.85%), Postives = 101/192 (52.60%), Query Frame = -3
Query:  285 DPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWLFRRFCYSSA*HPCFIIVKQWPYEAAAIAFEAIPRTLAQNCGVNVIRTMTALQGKHANG-ENAWIGIDGNTGAIS-DMKEGKIWDAYNVKAQTFKTAIEAACMLLRIDDIVSGIKKKQAPGSGQ 854
            +PKA  +LLRG++   L+E ER++ DA+   RN++  P +V GGGA E  ++  L++ + S+ G E+    +F                     A A E IP  LA+  G+  I+T+  L+ KHA G  NA  G+D   G I+ DM    + +   VKAQ  K+A+EAA  +L+IDD+++    K     G+
Sbjct:  374 NPKAVNILLRGSNDMALDEAERSINDALHSLRNVLMKPMIVAGGGAVETELALRLREYARSVGGKEQLAIEKF---------------------AEALEEIPMILAETAGMEPIQTLMDLRAKHAKGLINA--GVDVMNGKIADDMLALNVLEPVRVKAQVLKSAVEAATAILKIDDLIAAAPLKSGEKKGE 542          
BLAST of CX069698 vs. ExPASy Swiss-Prot
Match: TCPH_DICDI (T-complex protein 1 subunit eta OS=Dictyostelium discoideum GN=cct7 PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 4.278e-21
Identity = 62/188 (32.98%), Postives = 91/188 (48.40%), Query Frame = -3
Query:  285 KACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWLFRRFCYSSA*HPCFIIVKQWPYEAAAIAFEAIPRTLAQNCGVNVIRTMTALQGKHANGENAWIGIDGNTGAISDMKEGKIWDAYNVKAQTFKTAIEAACMLLRIDDIVSGIKKKQAPGSGQ 848
            +  T++LRG  +  ++E ER+L D++ + R   K+  +V GGGA E+ VS  L+  S SIEG ++ L   F                     A A E IPR +A N G +    +  L+ KHA GE  W G+D     I D  E  IW+   VK  +   A EA C++L +D+ V   + +QA    Q
Sbjct:  368 QTATIILRGGGEQFIDEAERSLHDSIMIVRRARKHRSVVAGGGAIEMEVSKYLRDYSLSIEGKKQLLINAF---------------------AKALEVIPRQIADNAGFDSTDILNQLRQKHAQGEK-WFGVDIVNEGICDTYESAIWEPSLVKLNSIVAATEATCLILSVDETVQNNQAEQAQAGPQ 533          
BLAST of CX069698 vs. ExPASy Swiss-Prot
Match: TCPD_CAEEL (T-complex protein 1 subunit delta OS=Caenorhabditis elegans GN=cct-4 PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 4.278e-21
Identity = 59/178 (33.15%), Postives = 97/178 (54.49%), Query Frame = -3
Query:  312 ACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWLFRRFCYSSA*HPCFIIVKQWPYEAAAIAFEAIPRTLAQNCGVNVIRTMTALQGKHANGENAWIGIDGNTGAISDMKEGKIWDAYNVKAQTFKTAIEAACMLLRIDDIVSGIK 845
            A ++LLRG++K +L E +R++ DA+ V R ++K   L+PGGGA E+ ++  L+  + +  G  ++ +R F                     A A E IP TLA+N G++ I T+T L+  HANG +++ G++   G ++DM E  +     V A   K A E    +L+IDDIV  ++
Sbjct:  385 AVSILLRGSNKLVLEEADRSIHDALCVIRCLVKKKALLPGGGAPEMEIAVKLRNLAQTQHGATQYCWRAF---------------------ADALELIPYTLAENAGLSPIHTVTELRNNHANGNSSY-GVNVRKGYVTDMVEEDVVQPLLVTASAIKQASECVRSILKIDDIVMAVR 540          
The following BLAST results are available for this feature:
BLAST of CX069698 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 139
Match NameE-valueIdentityDescription
THSA_THEK11.126e-2132.31Thermosome subunit alpha OS=Thermococcus sp. (stra... [more]
THSA_PYRKO1.126e-2132.31Thermosome subunit alpha OS=Pyrococcus kodakaraens... [more]
THS_DESSY1.470e-2133.70Thermosome subunit OS=Desulfurococcus sp. (strain ... [more]
THSB_PYRKO1.470e-2132.99Thermosome subunit beta OS=Pyrococcus kodakaraensi... [more]
TCPH_PONAB1.470e-2131.47T-complex protein 1 subunit eta OS=Pongo abelii GN... [more]
TCPH_HUMAN1.470e-2131.47T-complex protein 1 subunit eta OS=Homo sapiens GN... [more]
THS_METJA3.275e-2132.80Thermosome subunit OS=Methanocaldococcus jannaschi... [more]
THSA_SULTO4.278e-2133.85Thermosome subunit alpha OS=Sulfolobus tokodaii GN... [more]
TCPH_DICDI4.278e-2132.98T-complex protein 1 subunit eta OS=Dictyostelium d... [more]
TCPD_CAEEL4.278e-2133.15T-complex protein 1 subunit delta OS=Caenorhabditi... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_12C05_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-12C05-F10-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069698 ID=CX069698; Name=CX069698; organism=Citrus sinensis; type=EST; length=856bp
CTTTTTTTTTTTTTTTATCCAAAAACAGGATGTTAAAATATATATATATA
TTGCAGAGCATATCACAGCTTCCCAGTTTGTCTACAATGGCTAAAACATT
GGCGCAATATCACAAAATTTGGAGGAAAAGCTCAGCAAAATCATTAGACC
GCCAACAGAACAATAAACCAACATTTTTTCAAATAATTAAACTGCATAGT
CGTTGACAATAACATTGTCTAATCAGGGAGTATTTGCTCACTATCTGCAT
CTGCCTCCGTCTCAATCTGGGGCTTCGATGGAGCTTGGCCTGAGCCAGGG
GCCTGTTTCTTCTTAATTCCACTGACAATGTCATCAATCCTCAGAAGCAT
GCAAGCAGCTTCAATTGCTGTCTTAAATGTCTGTGCTTTCACATTATATG
CATCCCAGATCTTCCCCTCTTTCATGTCAGAAATTGCACCAGTGTTTCCA
TCTATGCCGATCCATGCATTTTCACCATTTGCATGTTTTCCTTGCAGAGC
AGTCATAGTCCGAATTACATTAACGCCACAATTCTGAGCCAAAGTTCTTG
GAATAGCCTCAAAAGCAATAGCAGCAGCTTCGTAAGGCCACTGTTTTACA
ATGATGAAGCATGGATGTCAGGCTGATGAATAACAAAAACGGCGGAAAAG
CCACTTTTCGATGCCTTCGATTGAGGAACTCTTTTGTTTTAGAGTGGCAG
ACACTGTTAATTCTGTAGCCCCACCACCAGGTACTAGTTTTGGATTCTTG
ATTATGTTTCTTGCCACAGACATTGCATCCTGCAAATTCCTTTCCACTTC
ATTCAGGAGATCCTTACTAGCACCTCTTAAGAGTACAGTACAAGCTTTTG
GATCTT
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