CX069698

Overview
NameCX069698
Unique NameCX069698
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length856
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX069698 vs. ExPASy Swiss-Prot
Match: TCPE_ARATH (T-complex protein 1 subunit epsilon OS=Arabidopsis thaliana GN=At1g24510 PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 4.730e-20
Identity = 54/176 (30.68%), Postives = 92/176 (52.27%), Query Frame = -3
Query:  321 KACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWLFRRFCYSSA*HPCFIIVKQWPYEAAAIAFEAIPRTLAQNCGVNVIRTMTALQGKHANGENAWIGIDGNTGAISDMKEGKIWDAYNVKAQTFKTAIEAACMLLRIDDIVS 848
            KA TV +RG +K ++ E +R++ DA+ VARN+I+N  +V GGGA E+  S  +   +    G+E++  R F                     A A +++P  LA+N G+  I T++A++ +       + GID N    +DM+E  +++    K Q    A +   M+L+IDD++S
Sbjct:  377 KAVTVFIRGGNKMMIEETKRSIHDALCVARNLIRNKSIVYGGGAAEIACSLAVDAAADKYPGVEQYAIRAF---------------------AEALDSVPMALAENSGLQPIETLSAVKSQQIKENIPFYGIDCNDVGTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDVIS 531          
BLAST of CX069698 vs. ExPASy Swiss-Prot
Match: TCPD_RAT (T-complex protein 1 subunit delta OS=Rattus norvegicus GN=Cct4 PE=1 SV=3)

HSP 1 Score: 97.8265 bits (242), Expect = 8.067e-20
Identity = 58/176 (32.95%), Postives = 92/176 (52.27%), Query Frame = -3
Query:  321 KACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWLFRRFCYSSA*HPCFIIVKQWPYEAAAIAFEAIPRTLAQNCGVNVIRTMTALQGKHANGENAWIGIDGNTGAISDMKEGKIWDAYNVKAQTFKTAIEAACMLLRIDDIVS 848
            K  T+++RG++K ++ E ER++ DA+ V R ++K   L+ GGGA E+ ++  L + S ++ G+E +  R F                     A A E IP TLA+N G+N I T+T L+ +HA GE    GI+   G IS++ E  +     V       A E    +L+IDD+V+
Sbjct:  384 KTVTIVVRGSNKLVIEEAERSIHDALCVIRCLVKKRALIAGGGAPEIELALRLTEYSRTLSGMESYCVRAF---------------------ADAMEVIPSTLAENAGLNPISTVTELRNRHAQGEKT-TGINVRKGGISNILEEMVVQPLLVSVSALTLATETVRSILKIDDVVN 537          
BLAST of CX069698 vs. ExPASy Swiss-Prot
Match: TCPD_MOUSE (T-complex protein 1 subunit delta OS=Mus musculus GN=Cct4 PE=1 SV=3)

HSP 1 Score: 97.8265 bits (242), Expect = 8.067e-20
Identity = 58/176 (32.95%), Postives = 92/176 (52.27%), Query Frame = -3
Query:  321 KACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWLFRRFCYSSA*HPCFIIVKQWPYEAAAIAFEAIPRTLAQNCGVNVIRTMTALQGKHANGENAWIGIDGNTGAISDMKEGKIWDAYNVKAQTFKTAIEAACMLLRIDDIVS 848
            K  T+++RG++K ++ E ER++ DA+ V R ++K   L+ GGGA E+ ++  L + S ++ G+E +  R F                     A A E IP TLA+N G+N I T+T L+ +HA GE    GI+   G IS++ E  +     V       A E    +L+IDD+V+
Sbjct:  384 KTVTIVVRGSNKLVIEEAERSIHDALCVIRCLVKKRALIAGGGAPEIELALRLTEYSRTLSGMESYCVRAF---------------------ADAMEVIPSTLAENAGLNPISTVTELRNRHAQGEKT-TGINVRKGGISNILEEMVVQPLLVSVSALTLATETVRSILKIDDVVN 537          
BLAST of CX069698 vs. ExPASy Swiss-Prot
Match: TCPD_PONAB (T-complex protein 1 subunit delta OS=Pongo abelii GN=CCT4 PE=2 SV=3)

HSP 1 Score: 97.4413 bits (241), Expect = 1.054e-19
Identity = 58/176 (32.95%), Postives = 92/176 (52.27%), Query Frame = -3
Query:  321 KACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWLFRRFCYSSA*HPCFIIVKQWPYEAAAIAFEAIPRTLAQNCGVNVIRTMTALQGKHANGENAWIGIDGNTGAISDMKEGKIWDAYNVKAQTFKTAIEAACMLLRIDDIVS 848
            K  T+++RG++K ++ E ER++ DA+ V R ++K   L+ GGGA E+ ++  L + S ++ G+E +  R F                     A A E IP TLA+N G+N I T+T L+ +HA GE    GI+   G IS++ E  +     V       A E    +L+IDD+V+
Sbjct:  384 KTVTIVVRGSNKLVIEEAERSIHDALCVIRCLVKKRALIAGGGAPEIELALRLTEYSRTLSGMESYCVRAF---------------------ADAMEVIPSTLAENAGLNPISTVTELRNRHAQGEKT-AGINVRKGGISNILEELVVQPLLVSVSALTLATETVRSILKIDDVVN 537          
BLAST of CX069698 vs. ExPASy Swiss-Prot
Match: TCPD_HUMAN (T-complex protein 1 subunit delta OS=Homo sapiens GN=CCT4 PE=1 SV=4)

HSP 1 Score: 97.4413 bits (241), Expect = 1.054e-19
Identity = 58/176 (32.95%), Postives = 92/176 (52.27%), Query Frame = -3
Query:  321 KACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWLFRRFCYSSA*HPCFIIVKQWPYEAAAIAFEAIPRTLAQNCGVNVIRTMTALQGKHANGENAWIGIDGNTGAISDMKEGKIWDAYNVKAQTFKTAIEAACMLLRIDDIVS 848
            K  T+++RG++K ++ E ER++ DA+ V R ++K   L+ GGGA E+ ++  L + S ++ G+E +  R F                     A A E IP TLA+N G+N I T+T L+ +HA GE    GI+   G IS++ E  +     V       A E    +L+IDD+V+
Sbjct:  384 KTVTIVVRGSNKLVIEEAERSIHDALCVIRCLVKKRALIAGGGAPEIELALRLTEYSRTLSGMESYCVRAF---------------------ADAMEVIPSTLAENAGLNPISTVTELRNRHAQGEKT-AGINVRKGGISNILEELVVQPLLVSVSALTLATETVRSILKIDDVVN 537          
BLAST of CX069698 vs. ExPASy Swiss-Prot
Match: THSA_SULSH (Thermosome subunit alpha OS=Sulfolobus shibatae GN=thsA PE=1 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.797e-19
Identity = 66/207 (31.88%), Postives = 102/207 (49.28%), Query Frame = -3
Query:  231 KACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWLFRRFCYSSA*HPCFIIVKQWPYEAAAIAFEAIPRTLAQNCGVNVIRTMTALQGKHANG-ENAWIGIDGNTGAISDMKEGKIWDAYNVKAQTFKTAIEAACMLLRIDDIVSGIKKKQAPGSGQAPSKPQIETEADADSEQI 848
            KA  +LLRG++   L+E ER++ DA+   RNI+  P ++PGGGA EL ++  L++ + S+ G E                     Q   EA A A E IP  LA+  G+  I  +  L+ +HA G  N  + + G    + D+    I +   VKAQ  K+A EAA  +L+IDD+++    K     G+  SK +   E  A +  +
Sbjct:  375 KAVNILLRGSNDMALDEAERSINDALHALRNILLEPVILPGGGAIELELAMKLREYARSVGGKE---------------------QLAIEAFADALEEIPTILAETAGLEAISALMDLRARHAKGLTNTGVDVIGGK-IVDDVYALNIIEPIRVKAQVLKSATEAATAILKIDDLIAAAPLKSEKKGGEG-SKEESGGEGGAGTPSL 558          
BLAST of CX069698 vs. ExPASy Swiss-Prot
Match: TCPQ_MOUSE (T-complex protein 1 subunit theta OS=Mus musculus GN=Cct8 PE=1 SV=3)

HSP 1 Score: 96.6709 bits (239), Expect = 1.797e-19
Identity = 59/203 (29.06%), Postives = 99/203 (48.77%), Query Frame = -3
Query:  249 DPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWLFRRFCYSSA*HPCFIIVKQWPYEAAAIAFEAIPRTLAQNCGVNVIRTMTALQGKHANG-ENAWIGIDGNTGAISDMKEGKIWDAYNVKAQTFKTAIEAACMLLRIDDIVSGIKKKQAPGSGQAPSKPQIETEAD 854
            D    T++LRG++ +L++++ER + D ++  + + ++ +LVPGGGATE+ ++  +     +  G+E++  ++F                     A AFEAIPR LA+N GV     ++ L   H  G +N  + I+    A+ DM E  I D Y  K    K A  AA  +LR+D I+        P  G  P   + + + D
Sbjct:  369 DGAISTIVLRGSTDNLMDDIERAVDDGVNTFKVLTRDKRLVPGGGATEIELAKQITSYGETCPGLEQYAIKKF---------------------AEAFEAIPRALAENSGVKANEVISKLYSVHQEGNKNVGLDIEAEVPAVKDMLEASILDTYLGKYWAIKLATNAAVTVLRVDQIIMA-----KPAGGPKPPSGKKDWDDD 545          
BLAST of CX069698 vs. ExPASy Swiss-Prot
Match: TCPE_CAEEL (T-complex protein 1 subunit epsilon OS=Caenorhabditis elegans GN=cct-5 PE=1 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.347e-19
Identity = 54/174 (31.03%), Postives = 93/174 (53.45%), Query Frame = -3
Query:  327 KACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWLFRRFCYSSA*HPCFIIVKQWPYEAAAIAFEAIPRTLAQNCGVNVIRTMTALQGKHANGENAWIGIDGNTGAISDMKEGKIWDAYNVKAQTFKTAIEAACMLLRIDDI 848
            KA T+ +RG +K +++E +R L DA+ V RN++++ ++V GGG+ EL  +  + +++  I+GIE++ FR F                     A A E+IP  LA+N G+  I  ++ L+ K      + +GID      +DMKE K+ +    K +    A +   M+L+IDD+
Sbjct:  380 KAVTIFVRGGNKMIIDEAKRALHDALCVIRNLVRDSRIVYGGGSAELAAAIQVAKEADRIDGIEQYAFRAF---------------------ADALESIPMALAENSGLAPIDALSDLKAKQIETGKSSLGIDAVFAGTNDMKEQKVIETLLSKREQISLATQVVRMILKIDDV 532          
BLAST of CX069698 vs. ExPASy Swiss-Prot
Match: TCPD_AEDTR (T-complex protein 1 subunit delta OS=Aedes triseriatus PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.347e-19
Identity = 57/173 (32.95%), Postives = 92/173 (53.18%), Query Frame = -3
Query:  321 TVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWLFRRFCYSSA*HPCFIIVKQWPYEAAAIAFEAIPRTLAQNCGVNVIRTMTALQGKHANGENAWIGIDGNTGAISDMKEGKIWDAYNVKAQTFKTAIEAACMLLRIDDIVS 839
            ++++RG++K +L E ER+L DA+ V R ++K    + GGGA E+ ++  L   + ++EG++ + FR F                     A A E IP TLA+N G+N I T+T L+ +HA GE    GI+   GAI+D+    +     V   +   A E    +L+IDDI++
Sbjct:  380 SIVVRGSNKLVLEEAERSLHDALCVVRCLVKKRAQIAGGGAPEIEMAIQLAAHAQTLEGVDAYCFRAF---------------------ANALEVIPSTLAENAGLNPIATVTELRNRHAQGEKN-AGINVRKGAITDILAENVVQPLLVSTSSITLASETVRSILKIDDIIN 530          
BLAST of CX069698 vs. ExPASy Swiss-Prot
Match: THSB_SULAC (Thermosome subunit beta OS=Sulfolobus acidocaldarius GN=thsB PE=3 SV=2)

HSP 1 Score: 95.9005 bits (237), Expect = 3.066e-19
Identity = 60/204 (29.41%), Postives = 101/204 (49.51%), Query Frame = -3
Query:  243 DPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWLFRRFCYSSA*HPCFIIVKQWPYEAAAIAFEAIPRTLAQNCGVNVIRTMTALQGKHANGENAWIGIDGNTGAISDMKEGKIWDAYNVKAQTFKTAIEAACMLLRIDDIVSGIKKKQAPGSGQAPSKPQIETEADAD 854
            +PKA ++L+RG  + +++E ER L+DA+    +++++ + + GGGA E  ++  L++ +  + G E                     Q   EA A A E++   L +N G + I  +  L+  H N  N W GI+  TG I DM    + +   VK    K A EA+ ++LRIDD++S  KK +    G+   K + E   + D
Sbjct:  375 NPKAVSILIRGGLERVVDETERALRDALGTVADVVRDGRAIAGGGAVETEIAKRLRKYAPQVGGKE---------------------QLAIEAYANALESLVMILIENGGFDPIELLVKLRSAHENETNKWHGINVYTGQIQDMWSLGVIEPAVVKMNAIKAATEASTLILRIDDLISAGKKSE----GKTGEKKESEKGKEED 553          
The following BLAST results are available for this feature:
BLAST of CX069698 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 139
Match NameE-valueIdentityDescription
TCPE_ARATH4.730e-2030.68T-complex protein 1 subunit epsilon OS=Arabidopsis... [more]
TCPD_RAT8.067e-2032.95T-complex protein 1 subunit delta OS=Rattus norveg... [more]
TCPD_MOUSE8.067e-2032.95T-complex protein 1 subunit delta OS=Mus musculus ... [more]
TCPD_PONAB1.054e-1932.95T-complex protein 1 subunit delta OS=Pongo abelii ... [more]
TCPD_HUMAN1.054e-1932.95T-complex protein 1 subunit delta OS=Homo sapiens ... [more]
THSA_SULSH1.797e-1931.88Thermosome subunit alpha OS=Sulfolobus shibatae GN... [more]
TCPQ_MOUSE1.797e-1929.06T-complex protein 1 subunit theta OS=Mus musculus ... [more]
TCPE_CAEEL2.347e-1931.03T-complex protein 1 subunit epsilon OS=Caenorhabdi... [more]
TCPD_AEDTR2.347e-1932.95T-complex protein 1 subunit delta OS=Aedes triseri... [more]
THSB_SULAC3.066e-1929.41Thermosome subunit beta OS=Sulfolobus acidocaldari... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_12C05_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-12C05-F10-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069698 ID=CX069698; Name=CX069698; organism=Citrus sinensis; type=EST; length=856bp
CTTTTTTTTTTTTTTTATCCAAAAACAGGATGTTAAAATATATATATATA
TTGCAGAGCATATCACAGCTTCCCAGTTTGTCTACAATGGCTAAAACATT
GGCGCAATATCACAAAATTTGGAGGAAAAGCTCAGCAAAATCATTAGACC
GCCAACAGAACAATAAACCAACATTTTTTCAAATAATTAAACTGCATAGT
CGTTGACAATAACATTGTCTAATCAGGGAGTATTTGCTCACTATCTGCAT
CTGCCTCCGTCTCAATCTGGGGCTTCGATGGAGCTTGGCCTGAGCCAGGG
GCCTGTTTCTTCTTAATTCCACTGACAATGTCATCAATCCTCAGAAGCAT
GCAAGCAGCTTCAATTGCTGTCTTAAATGTCTGTGCTTTCACATTATATG
CATCCCAGATCTTCCCCTCTTTCATGTCAGAAATTGCACCAGTGTTTCCA
TCTATGCCGATCCATGCATTTTCACCATTTGCATGTTTTCCTTGCAGAGC
AGTCATAGTCCGAATTACATTAACGCCACAATTCTGAGCCAAAGTTCTTG
GAATAGCCTCAAAAGCAATAGCAGCAGCTTCGTAAGGCCACTGTTTTACA
ATGATGAAGCATGGATGTCAGGCTGATGAATAACAAAAACGGCGGAAAAG
CCACTTTTCGATGCCTTCGATTGAGGAACTCTTTTGTTTTAGAGTGGCAG
ACACTGTTAATTCTGTAGCCCCACCACCAGGTACTAGTTTTGGATTCTTG
ATTATGTTTCTTGCCACAGACATTGCATCCTGCAAATTCCTTTCCACTTC
ATTCAGGAGATCCTTACTAGCACCTCTTAAGAGTACAGTACAAGCTTTTG
GATCTT
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