CX069695

Overview
NameCX069695
Unique NameCX069695
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length727
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX069695 vs. ExPASy Swiss-Prot
Match: RS17E_META3 (30S ribosomal protein S17e OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rps17e PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.384e-11
Identity = 29/61 (47.54%), Postives = 46/61 (75.41%), Query Frame = -2 
Query:  487 MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRI 669
            MGR+R   +K++   ++E+Y  R+T DF TNKK+++EVA I +KRLRN++AG+ T  MK++
Sbjct:    1 MGRIRQTFIKRAGEDLVEKYEDRLTTDFETNKKVIDEVAEIATKRLRNRVAGYVTKKMKKV 61
The following BLAST results are available for this feature:
BLAST of CX069695 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
RS17E_META31.384e-1147.5430S ribosomal protein S17e OS=Methanococcus aeolic... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_12C03_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-12C03-F6-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069695 ID=CX069695; Name=CX069695; organism=Citrus sinensis; type=EST; length=727bp
TTTTTGCAAAACTAATATGCATTATAACTTCAGTAAGTTGCATCCCAGTA
AAACAAATAAAATGAAAAGACAAAACAAGTCCATTAAATCAACTAAAGTA
TGATGCCAGAGTTCAAGTTTTAACTAAACACCCTTCTTAAAATAGTAAAG
AAAACTAGTCACAAAAGCATTCATAACAAACACAAGAAGTACTGATTAAT
AAGAACCTAAACTTCTCATTCTTGATTGAGCCACAAAGCCTCAATTAACT
CAGTACCTCCTGCCACCACCCCGACCAAAAACTGGAGGAGCAATCATGCT
CTGTGGCTCAACTTCAACAAGCCCAGAAATGTCAGACATGCCAAGAGCAG
CAAGCATATCCAAGGTTTCCTTGTCAACCTTAATTTCATCAGTCTTAATA
GCTGACTCATCAGGCACAAAGTCCATGCGGCGTTCGCGCTCCTCTTCCTG
CAATTTAAGGGAGATTCCACGAACTGGACCCTTCTGAATCCTCTTCATCA
AATGGGTTGAGAACCCAGCAATTTTGTTACGCAGCCTCTTCGAGGGGATG
ATAGCAACCTCCTCCAAAATCTTCTTGTTGGTATGGAAGTCCAGTGTCAT
TCTTGAGTAGTACCTCTCAATCACCTGGCGAGAGGACTTCTTCACGGTCT
TGGTACGAACACGACCCATTTCAGTTTAAGAAGCTGCTGCTGCTGCTGCA
AATAGGGAAAAAGTTTCTTTCAAACAG
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