CX069694

Overview
NameCX069694
Unique NameCX069694
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length885
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2880 contig Csv1_Contig2880:907..1791. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX069694 vs. ExPASy Swiss-Prot
Match: ERF3_SCHPO (Eukaryotic peptide chain release factor GTP-binding subunit OS=Schizosaccharomyces pombe GN=sup35 PE=1 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 1.855e-14
Identity = 51/159 (32.08%), Postives = 87/159 (54.72%), Query Frame = -1
Query:  412 TTEVKSV-EMHHESLQEALPGDNVGFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVG-VIKSVD 882
            T EV ++ +   E +  ++ GD V   V+     D++ GYV +++K+ P    + F +Q+ I+  P  +  GY+ V+  HT+   V FA++L K+D+ + K  +K P F   G     ++    P+ +E F +Y  +GRF +RD   TVAVG V+K +D
Sbjct:  507 TLEVTAIYDEADEEISSSICGDQVRLRVRGDD-SDVQTGYVLTSTKN-PVHATTRFIAQIAILELPSILTTGYSCVMHIHTAVEEVSFAKLLHKLDKTNRKS-KKPPMFATKGMKIIAELETQTPVCMERFEDYQYMGRFTLRDQGTTVAVGKVVKILD 662          
BLAST of CX069694 vs. ExPASy Swiss-Prot
Match: HBS1L_HUMAN (HBS1-like protein OS=Homo sapiens GN=HBS1L PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.961e-12
Identity = 39/156 (25.00%), Postives = 77/156 (49.36%), Query Frame = -1
Query:  415 TTEVKSVEMHHESLQEALPGDNVGFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSV 882
            T  VK + +H E +  A  GD+V   +  + +  +  G +    K  P K  + F ++++I N    I  G+  +L   T         +++ +++ +G+  +K+PKFL  G    V++   +P+ +E + ++  LGRF +R    T+A GV+  +
Sbjct:  528 TCTVKGITLHDEPVDWAAAGDHVSLTLVGMDIIKINVGCIFCGPKV-PIKACTRFRARILIFNIEIPITKGFPVLLHYQTVSEPAVIKRLISVLNKSTGEVTKKKPKFLTKGQNALVELQTQRPIALELYKDFKELGRFMLRYGGSTIAAGVVTEI 682          
BLAST of CX069694 vs. ExPASy Swiss-Prot
Match: HBS1L_PONAB (HBS1-like protein OS=Pongo abelii GN=HBS1L PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 5.051e-12
Identity = 39/153 (25.49%), Postives = 76/153 (49.67%), Query Frame = -1
Query:  424 TTEVKSVEMHHESLQEALPGDNVGFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVI 882
            T  VK + +H E +  A  GD+V   +  + +  +  G +    K  P K  + F ++++I N    I  G+  +L   T         +++ +++ +G+  +K+PKFL  G    V++   +P+ +E + ++  LGRF +R    T+A GV+
Sbjct:  528 TCTVKGITLHDEPVDWAAAGDHVSLTLVGMDIIKINVGCIFCGPKV-PIKACTRFRARILIFNIEIPITKGFPVLLHYQTVSEPAVIKRLISVLNKSTGEVTKKKPKFLTKGQNALVELQTQRPIALELYKDFKELGRFMLRYGGSTIAAGVV 679          
BLAST of CX069694 vs. ExPASy Swiss-Prot
Match: HBS1L_RAT (HBS1-like protein OS=Rattus norvegicus GN=Hbs1l PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 6.597e-12
Identity = 38/156 (24.36%), Postives = 76/156 (48.72%), Query Frame = -1
Query:  415 TTEVKSVEMHHESLQEALPGDNVGFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSV 882
            T   K + +H E +  A  GD+V   +  + +  +  G +    K+ P K  + F ++++I N    I  G+  +L   T         +++ +++ +G+  +K+PK L  G    V++   +P+ +E + ++  LGRF +R    TVA GV+  +
Sbjct:  523 TCTAKGITLHDEPVDWAAAGDHVSLTLVGMDIIKINVGCIFCGPKE-PIKACTRFRARILIFNIEVPITKGFPVLLHYQTVSEPAVIKRLISVLNKSTGEVTKKKPKLLTKGQNALVELQTQRPVALELYKDFKELGRFMLRYGGSTVAAGVVTEI 677          
BLAST of CX069694 vs. ExPASy Swiss-Prot
Match: HBS1L_MOUSE (HBS1-like protein OS=Mus musculus GN=Hbs1l PE=1 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 8.616e-12
Identity = 37/156 (23.72%), Postives = 76/156 (48.72%), Query Frame = -1
Query:  415 TTEVKSVEMHHESLQEALPGDNVGFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSV 882
            T   K + +H E +  A  GD+V   +  + +  +  G +    K+ P K  + F +++++ N    I  G+  +L   T         +++ +++ +G+  +K+PK L  G    V++   +P+ +E + ++  LGRF +R    TVA GV+  +
Sbjct:  526 TCTAKGITLHDEPVDWAAAGDHVNLTLVGMDIIKINVGCIFCGPKE-PIKACTRFRARILVFNIEVPITKGFPVLLHYQTVSEPAVIKRLISVLNKSTGEVTKKKPKLLTKGQNALVELQTQRPVALELYKDFKELGRFMLRYGGSTVAAGVVTEI 680          
BLAST of CX069694 vs. ExPASy Swiss-Prot
Match: HBS1L_BOVIN (HBS1-like protein OS=Bos taurus GN=HBS1L PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.274e-11
Identity = 37/156 (23.72%), Postives = 76/156 (48.72%), Query Frame = -1
Query:  415 TTEVKSVEMHHESLQEALPGDNVGFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSV 882
            T   K + +H E +  A  GD+V   +  + +  +  G +    K+ P K  + F ++++I N    I  G+  +L   T         +++ +++ +G+  +K+PK L  G    V++   +P+ +E + ++  LGRF +R    T+A GV+  +
Sbjct:  530 TCTAKGITLHDEPVDWAAAGDHVSLTLVGMDIIKINVGCIFCVPKE-PIKVCTRFRARILIFNIEIPITKGFPVLLHYQTVSEPAVIKRLISVLNKSTGEVTKKKPKLLTKGQNALVELQTQRPVALELYKDFKELGRFMLRYSGSTIAAGVVTEI 684          
The following BLAST results are available for this feature:
BLAST of CX069694 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 176
Match NameE-valueIdentityDescription
ERF3_SCHPO1.855e-1432.08Eukaryotic peptide chain release factor GTP-bindin... [more]
HBS1L_HUMAN2.961e-1225.00HBS1-like protein OS=Homo sapiens GN=HBS1L PE=1 SV... [more]
HBS1L_PONAB5.051e-1225.49HBS1-like protein OS=Pongo abelii GN=HBS1L PE=2 SV... [more]
HBS1L_RAT6.597e-1224.36HBS1-like protein OS=Rattus norvegicus GN=Hbs1l PE... [more]
HBS1L_MOUSE8.616e-1223.72HBS1-like protein OS=Mus musculus GN=Hbs1l PE=1 SV... [more]
HBS1L_BOVIN3.274e-1123.72HBS1-like protein OS=Bos taurus GN=HBS1L PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_12C03_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-12C03-F6-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069694 ID=CX069694; Name=CX069694; organism=Citrus sinensis; type=EST; length=885bp
CTTTTTTTTTCCAGAAGCCAAAAATATTTGAAAATGGCAAACTAGATAGA
ACATAAAACATCAACAAACAACATCTTAAGGAGCTCAGCAGAGACCTAAA
ACTCCTGAGCTGCTTACAAAATATCCAAGTTTGAACATGACATGGACAAC
AAAAATAGACTCAATACAGTAATCTCGCCACCGCCGATCAAGAACCCAGT
TCTGTGAACAAAAGTCTCTTGTCGATGGTGACGAATTGTAATTATAACCA
GCAAATTGACGACCCAAACATCCAACACATTTATGCCTAAAAAGAACACA
ATCTTTATTGTGATGACGCCTATAGACATTACTTGCAGACAAAGATGCCA
GCACAGTTCACTTCTTCTTCACAGCAGACTTGGTTACCTTGGCTCCAGAT
GGATCCTTCTTGTCCACGCTCTTGATGACTCCAACAGCGACGGTCTGGCG
CATGTCTCTCACAGCAAAACGACCAAGTGGGGGATATTCGGAGAAAGTTT
CCACAACCATAGGCTTGGTGGGAATCATCTTAACAAACCCAGCATCACCA
TTCTTTAAGAATTTGGGCTCCTTCTCCAGCTCCTTACCAGATCGCCTGTC
AATCTTGGTCAAGATTTCAGCAAACTTGACAGCTATGTGGGAAGTGTGGC
AATCAAGAACAGGTGCATAACCGTTTCCAATCTGGCCAGGGTGGTTCATG
ATGATAACTTGGGAGGTGAAGTTGGATGCCCCCTTGGCGGGATCGTCCTT
GGAGTTAGATGCAACGTAACCACGCTTAAGATCCTTCACTGAAACATTCT
TAACGTTGAACCCCACATTATCACCAGGAAGTGCCTCCTGGAGAGACTCA
TGGTGCATCTCAACCGACTTAACTTCCGTAGTCAA
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