CX069686

Overview
NameCX069686
Unique NameCX069686
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length743
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7124 contig Csv1_Contig7124:1025..1766. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX069686 vs. ExPASy Swiss-Prot
Match: EF1A2_RHIRA (Elongation factor 1-alpha OS=Rhizomucor racemosus GN=TEF-2 PE=3 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 1.683e-44
Identity = 83/113 (73.45%), Postives = 101/113 (89.38%), Query Frame = -2 
Query:  380 KAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKKDPSG 718
            ++A+FT+QVII+NHPGQI  GYAPVLDCHT+HIA KFSEL+ KIDRRSGK++E  PKF+K+GD+ +VKM+P+KPM VE ++DYPPLGRFAVRDMRQTVAVGVIK VEK D +G
Sbjct:  334 ESASFTAQVIILNHPGQISAGYAPVLDCHTAHIACKFSELIEKIDRRSGKKMEDSPKFVKSGDSAIVKMVPSKPMCVEAYTDYPPLGRFAVRDMRQTVAVGVIKAVEKVDKAG 446
[Close]
BLAST of CX069686 vs. ExPASy Swiss-Prot
Match: EF1A1_RHIRA (Elongation factor 1-alpha OS=Rhizomucor racemosus GN=TEF-1 PE=3 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 1.683e-44
Identity = 83/113 (73.45%), Postives = 101/113 (89.38%), Query Frame = -2 
Query:  380 KAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKKDPSG 718
            ++A+FT+QVII+NHPGQI  GYAPVLDCHT+HIA KFSEL+ KIDRRSGK++E  PKF+K+GD+ +VKM+P+KPM VE ++DYPPLGRFAVRDMRQTVAVGVIK VEK D +G
Sbjct:  334 ESASFTAQVIILNHPGQISAGYAPVLDCHTAHIACKFSELIEKIDRRSGKKMEDSPKFVKSGDSAIVKMVPSKPMCVEAYTDYPPLGRFAVRDMRQTVAVGVIKAVEKVDKAG 446
[Close]
BLAST of CX069686 vs. ExPASy Swiss-Prot
Match: EF1A_COCIM (Elongation factor 1-alpha OS=Coccidioides immitis GN=TEF PE=2 SV=2)

HSP 1 Score: 177.948 bits (450), Expect = 4.897e-44
Identity = 81/115 (70.43%), Postives = 99/115 (86.09%), Query Frame = -2 
Query:  380 PGKAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKKDPSG 724
            P    +F +QVI++NHPGQ+G GYAPVLDCHT+HIA KFSEL+ KIDRR+GK +E  PKF+K+GDA +VKM+P+KPM VE F+DYPPLGRFAVRDMRQTVAVGVIK+VEK + +G
Sbjct:  333 PKGCDSFNAQVIVLNHPGQVGAGYAPVLDCHTAHIACKFSELLEKIDRRTGKSVENNPKFIKSGDAAIVKMVPSKPMCVEAFTDYPPLGRFAVRDMRQTVAVGVIKSVEKSEKTG 447
[Close]
BLAST of CX069686 vs. ExPASy Swiss-Prot
Match: EF1A_NEUCR (Elongation factor 1-alpha OS=Neurospora crassa GN=tef-1 PE=3 SV=2)

HSP 1 Score: 177.563 bits (449), Expect = 6.396e-44
Identity = 82/110 (74.55%), Postives = 98/110 (89.09%), Query Frame = -2 
Query:  395 PGKAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEK 724
            P  AA+FT+QVI++NHPGQ+G GYAPVLDCHT+HIA KF+EL+ KIDRR+GK +E  PKF+K+GDA +VKMIP+KPM VE F+DYPPLGRFAVRDMRQTVAVGVIK V+K
Sbjct:  333 PAGAASFTAQVIVLNHPGQVGAGYAPVLDCHTAHIACKFAELLEKIDRRTGKAVEASPKFIKSGDAAIVKMIPSKPMCVEAFTDYPPLGRFAVRDMRQTVAVGVIKAVDK 442
[Close]
BLAST of CX069686 vs. ExPASy Swiss-Prot
Match: EF1A_CHICK (Elongation factor 1-alpha 1 OS=Gallus gallus GN=EEF1A PE=2 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 6.396e-44
Identity = 87/111 (78.38%), Postives = 97/111 (87.39%), Query Frame = -2 
Query:  392 PGKAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKK 724
            P +AA FT+QVII+NHPGQI  GYAPVLDCHT+HIA KF+EL  KIDRRSGK+LE  PKFLK+GDA +V MIP KPM VE+FSDYPPLGRFAVRDMRQTVAVGVIK V+KK
Sbjct:  334 PMEAAGFTAQVIILNHPGQISAGYAPVLDCHTAHIACKFAELKEKIDRRSGKKLEDGPKFLKSGDAAIVDMIPGKPMCVESFSDYPPLGRFAVRDMRQTVAVGVIKAVDKK 444
[Close]
BLAST of CX069686 vs. ExPASy Swiss-Prot
Match: EF1A_AURPU (Elongation factor 1-alpha OS=Aureobasidium pullulans GN=TEF1 PE=3 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 8.354e-44
Identity = 82/115 (71.30%), Postives = 97/115 (84.35%), Query Frame = -2 
Query:  380 PGKAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKKDPSG 724
            P    +F +QVI++NHPGQ+G GYAPVLDCHT+HIA KFSELV KIDRR+GK +E  PKF+K+GDA +VKM+P+KPM VE F+DYPPLGRFAVRDMRQTVAVGVIK+V K D  G
Sbjct:  331 PKGCDSFNAQVIVLNHPGQVGAGYAPVLDCHTAHIACKFSELVEKIDRRTGKSVEAAPKFIKSGDAAIVKMVPSKPMCVEAFTDYPPLGRFAVRDMRQTVAVGVIKSVAKSDKQG 445
[Close]
BLAST of CX069686 vs. ExPASy Swiss-Prot
Match: EF1A2_RAT (Elongation factor 1-alpha 2 OS=Rattus norvegicus GN=Eef1a2 PE=2 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 8.354e-44
Identity = 85/111 (76.58%), Postives = 97/111 (87.39%), Query Frame = -2 
Query:  392 PGKAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKK 724
            P +AA FTSQVII+NHPGQI  GY+PV+DCHT+HIA KF+EL  KIDRRSGK+LE  PK LK+GDA +V+M+P KPM VE+FS YPPLGRFAVRDMRQTVAVGVIKNVEKK
Sbjct:  334 PQEAAQFTSQVIILNHPGQISAGYSPVIDCHTAHIACKFAELKEKIDRRSGKKLEDNPKSLKSGDAAIVEMVPGKPMCVESFSQYPPLGRFAVRDMRQTVAVGVIKNVEKK 444
[Close]
BLAST of CX069686 vs. ExPASy Swiss-Prot
Match: EF1A2_RABIT (Elongation factor 1-alpha 2 OS=Oryctolagus cuniculus GN=EEF1A2 PE=1 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 8.354e-44
Identity = 85/111 (76.58%), Postives = 97/111 (87.39%), Query Frame = -2 
Query:  392 PGKAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKK 724
            P +AA FTSQVII+NHPGQI  GY+PV+DCHT+HIA KF+EL  KIDRRSGK+LE  PK LK+GDA +V+M+P KPM VE+FS YPPLGRFAVRDMRQTVAVGVIKNVEKK
Sbjct:  334 PQEAAQFTSQVIILNHPGQISAGYSPVIDCHTAHIACKFAELKEKIDRRSGKKLEDNPKSLKSGDAAIVEMVPGKPMCVESFSQYPPLGRFAVRDMRQTVAVGVIKNVEKK 444
[Close]
BLAST of CX069686 vs. ExPASy Swiss-Prot
Match: EF1A2_MOUSE (Elongation factor 1-alpha 2 OS=Mus musculus GN=Eef1a2 PE=1 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 8.354e-44
Identity = 85/111 (76.58%), Postives = 97/111 (87.39%), Query Frame = -2 
Query:  392 PGKAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKK 724
            P +AA FTSQVII+NHPGQI  GY+PV+DCHT+HIA KF+EL  KIDRRSGK+LE  PK LK+GDA +V+M+P KPM VE+FS YPPLGRFAVRDMRQTVAVGVIKNVEKK
Sbjct:  334 PQEAAQFTSQVIILNHPGQISAGYSPVIDCHTAHIACKFAELKEKIDRRSGKKLEDNPKSLKSGDAAIVEMVPGKPMCVESFSQYPPLGRFAVRDMRQTVAVGVIKNVEKK 444
[Close]
BLAST of CX069686 vs. ExPASy Swiss-Prot
Match: EF1A2_HUMAN (Elongation factor 1-alpha 2 OS=Homo sapiens GN=EEF1A2 PE=1 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 8.354e-44
Identity = 85/111 (76.58%), Postives = 97/111 (87.39%), Query Frame = -2 
Query:  392 PGKAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKK 724
            P +AA FTSQVII+NHPGQI  GY+PV+DCHT+HIA KF+EL  KIDRRSGK+LE  PK LK+GDA +V+M+P KPM VE+FS YPPLGRFAVRDMRQTVAVGVIKNVEKK
Sbjct:  334 PQEAAQFTSQVIILNHPGQISAGYSPVIDCHTAHIACKFAELKEKIDRRSGKKLEDNPKSLKSGDAAIVEMVPGKPMCVESFSQYPPLGRFAVRDMRQTVAVGVIKNVEKK 444
The following BLAST results are available for this feature:
BLAST of CX069686 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 167
Match NameE-valueIdentityDescription
EF1A2_RHIRA1.683e-4473.45Elongation factor 1-alpha OS=Rhizomucor racemosus ... [more]
EF1A1_RHIRA1.683e-4473.45Elongation factor 1-alpha OS=Rhizomucor racemosus ... [more]
EF1A_COCIM4.897e-4470.43Elongation factor 1-alpha OS=Coccidioides immitis ... [more]
EF1A_NEUCR6.396e-4474.55Elongation factor 1-alpha OS=Neurospora crassa GN=... [more]
EF1A_CHICK6.396e-4478.38Elongation factor 1-alpha 1 OS=Gallus gallus GN=EE... [more]
EF1A_AURPU8.354e-4471.30Elongation factor 1-alpha OS=Aureobasidium pullula... [more]
EF1A2_RAT8.354e-4476.58Elongation factor 1-alpha 2 OS=Rattus norvegicus G... [more]
EF1A2_RABIT8.354e-4476.58Elongation factor 1-alpha 2 OS=Oryctolagus cunicul... [more]
EF1A2_MOUSE8.354e-4476.58Elongation factor 1-alpha 2 OS=Mus musculus GN=Eef... [more]
EF1A2_HUMAN8.354e-4476.58Elongation factor 1-alpha 2 OS=Homo sapiens GN=EEF... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_12B11_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-12B11-D22-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069686 ID=CX069686; Name=CX069686; organism=Citrus sinensis; type=EST; length=743bp
CCCCCCCTCTTTTTTGAAAAATGAAAAGTACATTTTTATTCCGCAGAAAC
AACACAATGACAAAACTTCTGAGCCTATTCAGATGAAACCGAACCACCTC
AAGTATCAATACAAACAAAGACCATAACTATTAATAATATTGAGACTCCA
GGTTAGAGCTGCGCCACCGCCTGTCAAGCACCCAATTCTGGGAATCGGTA
CCCGACACCAAAGGCAACAAACTAAAACCTACAAAGGAAAGCAAGCATCG
AACTATAACAGTACCAAAAATAACCAAGTTTGTATAACTACAATTATTAA
AATAGACTCCATCTGCGGATAAAGCAACATTAACCAACCCGATTCACTTC
TTCTTGGCTGCAGACTTGGTGACCTTGGCACCTGATGGATCCTTCTTTTC
AACATTCTTAATCACACCAACAGCAACAGTCTGACGCATGTCCCTAACGG
CAAAACGACCAAGAGGTGGGTAGTCAGAGAAGGTTTCAACAACCATGGGC
TTGGTGGGAATCATCTTAACCATTCCAGCATCTCCATTCTTCAAGAACTT
GGGCTCCTTCTCAAGCTCCTTGCCTGATCGCCTATCAATCTTCGTCACGA
GCTCAGAAAACTTGACGGCAATGTGGGAGGTGTGGCAGTCAAGCACTGGG
GCATATCCATTTCCAATCTGGCCAGGGTGGTTCATGATGATGACCTGTGA
GGTGAAGTTGGCAGCTTTCCCTGGCCGGATCATCCTTCGAGTT
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