CX069686

Overview
NameCX069686
Unique NameCX069686
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length743
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7124 contig Csv1_Contig7124:1025..1766. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX069686 vs. ExPASy Swiss-Prot
Match: EF1A_ASHGO (Elongation factor 1-alpha OS=Ashbya gossypii GN=TEF PE=3 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 1.334e-41
Identity = 80/115 (69.57%), Postives = 94/115 (81.74%), Query Frame = -2
Query:  380 PGKAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKKDPSG 724
            P  A +F + VI++NHPGQI  GY+PVLDCHT+HIA KF EL+ K DRR+GK+LE  PKFLK GDA MVK +P+KPM VE F+DYPPLGRFAVRDMRQTVAVGVIK+V K D +G
Sbjct:  332 PKAAESFNATVIVLNHPGQISAGYSPVLDCHTAHIACKFDELLEKNDRRTGKKLEDSPKFLKAGDAAMVKFVPSKPMCVEAFTDYPPLGRFAVRDMRQTVAVGVIKSVVKSDKAG 446          
BLAST of CX069686 vs. ExPASy Swiss-Prot
Match: EF1A_EUGGR (Elongation factor 1-alpha OS=Euglena gracilis GN=TEF PE=2 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 5.068e-41
Identity = 82/113 (72.57%), Postives = 97/113 (85.84%), Query Frame = -2
Query:  380 KAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKKDPSG 718
            +AA+FT+QVII+NHPGQIGNGYAPVLDCHT HIA KF+ + TKIDRRSGKELE EPKF+K+GDA +V M P KPM VE+F+DYPPLG  +  DMRQTVAVGVIK+V KK+ +G
Sbjct:  324 EAADFTAQVIILNHPGQIGNGYAPVLDCHTCHIACKFATIQTKIDRRSGKELEAEPKFIKSGDAAIVLMKPQKPMCVESFTDYPPLG-VSCGDMRQTVAVGVIKSVNKKENTG 435          
BLAST of CX069686 vs. ExPASy Swiss-Prot
Match: EF1A_ARTSA (Elongation factor 1-alpha OS=Artemia salina PE=1 SV=2)

HSP 1 Score: 167.162 bits (422), Expect = 8.645e-41
Identity = 75/109 (68.81%), Postives = 93/109 (85.32%), Query Frame = -2
Query:  383 NFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKKDPS 709
            +F +QVI++NHPGQI NGY PVLDCHT+HIA KF+E+  K DRR+GK  E EPKF+K+GDA M+ ++P+KP+ VE FSD+PPLGRFAVRDMRQTVAVGVIK+V  KDP+
Sbjct:  339 DFFAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKCDRRTGKTTEAEPKFIKSGDAAMITLVPSKPLCVEAFSDFPPLGRFAVRDMRQTVAVGVIKSVNFKDPT 447          
BLAST of CX069686 vs. ExPASy Swiss-Prot
Match: EF1A_YEAST (Elongation factor 1-alpha OS=Saccharomyces cerevisiae GN=TEF1 PE=1 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 1.129e-40
Identity = 77/112 (68.75%), Postives = 94/112 (83.93%), Query Frame = -2
Query:  389 PGKAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKKD 724
            P   A+F + VI++NHPGQI  GY+PVLDCHT+HIA +F EL+ K DRRSGK+LE  PKFLK+GDA +VK +P+KPM VE FS+YPPLGRFAVRDMRQTVAVGVIK+V+K +
Sbjct:  332 PKGCASFNATVIVLNHPGQISAGYSPVLDCHTAHIACRFDELLEKNDRRSGKKLEDHPKFLKSGDAALVKFVPSKPMCVEAFSEYPPLGRFAVRDMRQTVAVGVIKSVDKTE 443          
BLAST of CX069686 vs. ExPASy Swiss-Prot
Match: EF1A_TETPY (Elongation factor 1-alpha OS=Tetrahymena pyriformis PE=2 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 5.603e-40
Identity = 78/110 (70.91%), Postives = 90/110 (81.82%), Query Frame = -2
Query:  389 KAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKKD 718
            +AA F SQVIIMNHPGQI  GY PVLDCHT+HIA KF  +  KIDRR+GK  E+ PKF+KNGDA +V +IPTK + VE F +YPPLGR+AVRDM+QTVAVGVIK VEKKD
Sbjct:  325 EAATFYSQVIIMNHPGQIQAGYTPVLDCHTAHIACKFETIHDKIDRRTGKSQEENPKFIKNGDAALVTLIPTKALCVEVFQEYPPLGRYAVRDMKQTVAVGVIKKVEKKD 434          
BLAST of CX069686 vs. ExPASy Swiss-Prot
Match: EF1A_APIME (Elongation factor 1-alpha OS=Apis mellifera PE=3 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 5.603e-40
Identity = 77/115 (66.96%), Postives = 93/115 (80.87%), Query Frame = -2
Query:  380 PGKAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKKDPSG 724
            P  AA+FT+QVI++NHPGQI NGY PVLDCHT+HIA KF+E+  K DRR+GK  E+ PK +K+GDA +V + PTKPM VE F ++PPLGRFAVRDMRQTVAVGVIK+V  KD  G
Sbjct:  334 PRGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKCDRRTGKTTEENPKSIKSGDAAIVMLQPTKPMCVEAFQEFPPLGRFAVRDMRQTVAVGVIKSVTFKDTQG 448          
BLAST of CX069686 vs. ExPASy Swiss-Prot
Match: EF1A_EIMBO (Elongation factor 1-alpha (Fragment) OS=Eimeria bovis PE=2 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 7.318e-40
Identity = 75/112 (66.96%), Postives = 95/112 (84.82%), Query Frame = -2
Query:  380 AANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKKDPSG 715
            AA+F +QVI+++HPGQI  GY+PV+DCHT+HIA KF+ L  ++DRRSGK LE +PKF+K GDA ++KM P+KPM VE+F +YPPLGRFAVRDM+QTVAVGVIK VEKK+  G
Sbjct:  222 AASFQAQVIVLHHPGQINPGYSPVVDCHTAHIACKFAVLEKRLDRRSGKALEDDPKFIKTGDAAIIKMEPSKPMCVESFIEYPPLGRFAVRDMKQTVAVGVIKGVEKKEAGG 333          
BLAST of CX069686 vs. ExPASy Swiss-Prot
Match: EF1A_RHYAM (Elongation factor 1-alpha (Fragment) OS=Rhynchosciara americana PE=2 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 9.558e-40
Identity = 76/115 (66.09%), Postives = 94/115 (81.74%), Query Frame = -2
Query:  380 PGKAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKKDPSG 724
            P  A NFT+QVI++NHPGQI NGY PVLDCHT+HIA KF+E+  K+DRRSGK  E  PK +K+GDA +V + P+KP+ VE+F ++PPLGRFAVRDMRQTVAVGVIK+V  KD +G
Sbjct:  283 PKGAENFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKXKVDRRSGKSTEDNPKAIKSGDAAIVILQPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKSVVFKDATG 397          
BLAST of CX069686 vs. ExPASy Swiss-Prot
Match: EF1A_BOMMO (Elongation factor 1-alpha OS=Bombyx mori PE=2 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.248e-39
Identity = 74/115 (64.35%), Postives = 94/115 (81.74%), Query Frame = -2
Query:  380 PGKAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKKDPSG 724
            P  AA+FT+QVI++NHPGQI NGY PVLDCHT+HIA KF+E+  K+DRR+GK  E  PK +K+GDA +V ++P+KP+ VE+F ++PPLGRFAVRDMRQTVAVGVIK V  K+  G
Sbjct:  334 PKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAVNFKEAGG 448          
BLAST of CX069686 vs. ExPASy Swiss-Prot
Match: EF1A2_DROME (Elongation factor 1-alpha 2 OS=Drosophila melanogaster GN=Ef1alpha100E PE=1 SV=2)

HSP 1 Score: 162.925 bits (411), Expect = 1.630e-39
Identity = 74/112 (66.07%), Postives = 94/112 (83.93%), Query Frame = -2
Query:  389 PGKAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKKD 724
            P  AA+FT+QVI++NHPGQI NGY PVLDCHT+HIA KFSE+  K DRR+GK  E EPK +K+GDA ++ ++P+KP+ VE+F ++PPLGRFAVRDMRQTVAVGVIK+V  K+
Sbjct:  334 PRGAADFTAQVIVLNHPGQIANGYTPVLDCHTAHIACKFSEIKEKCDRRTGKTTETEPKAIKSGDAAIIVLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKSVNFKE 445          
The following BLAST results are available for this feature:
BLAST of CX069686 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 167
Match NameE-valueIdentityDescription
EF1A_ASHGO1.334e-4169.57Elongation factor 1-alpha OS=Ashbya gossypii GN=TE... [more]
EF1A_EUGGR5.068e-4172.57Elongation factor 1-alpha OS=Euglena gracilis GN=T... [more]
EF1A_ARTSA8.645e-4168.81Elongation factor 1-alpha OS=Artemia salina PE=1 S... [more]
EF1A_YEAST1.129e-4068.75Elongation factor 1-alpha OS=Saccharomyces cerevis... [more]
EF1A_TETPY5.603e-4070.91Elongation factor 1-alpha OS=Tetrahymena pyriformi... [more]
EF1A_APIME5.603e-4066.96Elongation factor 1-alpha OS=Apis mellifera PE=3 S... [more]
EF1A_EIMBO7.318e-4066.96Elongation factor 1-alpha (Fragment) OS=Eimeria bo... [more]
EF1A_RHYAM9.558e-4066.09Elongation factor 1-alpha (Fragment) OS=Rhynchosci... [more]
EF1A_BOMMO1.248e-3964.35Elongation factor 1-alpha OS=Bombyx mori PE=2 SV=1[more]
EF1A2_DROME1.630e-3966.07Elongation factor 1-alpha 2 OS=Drosophila melanoga... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_12B11_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-12B11-D22-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069686 ID=CX069686; Name=CX069686; organism=Citrus sinensis; type=EST; length=743bp
CCCCCCCTCTTTTTTGAAAAATGAAAAGTACATTTTTATTCCGCAGAAAC
AACACAATGACAAAACTTCTGAGCCTATTCAGATGAAACCGAACCACCTC
AAGTATCAATACAAACAAAGACCATAACTATTAATAATATTGAGACTCCA
GGTTAGAGCTGCGCCACCGCCTGTCAAGCACCCAATTCTGGGAATCGGTA
CCCGACACCAAAGGCAACAAACTAAAACCTACAAAGGAAAGCAAGCATCG
AACTATAACAGTACCAAAAATAACCAAGTTTGTATAACTACAATTATTAA
AATAGACTCCATCTGCGGATAAAGCAACATTAACCAACCCGATTCACTTC
TTCTTGGCTGCAGACTTGGTGACCTTGGCACCTGATGGATCCTTCTTTTC
AACATTCTTAATCACACCAACAGCAACAGTCTGACGCATGTCCCTAACGG
CAAAACGACCAAGAGGTGGGTAGTCAGAGAAGGTTTCAACAACCATGGGC
TTGGTGGGAATCATCTTAACCATTCCAGCATCTCCATTCTTCAAGAACTT
GGGCTCCTTCTCAAGCTCCTTGCCTGATCGCCTATCAATCTTCGTCACGA
GCTCAGAAAACTTGACGGCAATGTGGGAGGTGTGGCAGTCAAGCACTGGG
GCATATCCATTTCCAATCTGGCCAGGGTGGTTCATGATGATGACCTGTGA
GGTGAAGTTGGCAGCTTTCCCTGGCCGGATCATCCTTCGAGTT
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