CX069677

Overview
NameCX069677
Unique NameCX069677
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length821
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX069677 vs. ExPASy Swiss-Prot
Match: RS3_SYNPW (30S ribosomal protein S3 OS=Synechococcus sp. (strain WH7803) GN=rpsC PE=3 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 2.207e-35
Identity = 79/199 (39.70%), Postives = 121/199 (60.80%), Query Frame = 3
Query:    3 SLWFAKPKNYCEGLQEDQKIRNFI-KNYIKKNIRISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNVQKELNCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDE 596
            S W+A  K+Y   L+ED +IR FI K Y         G  GI+ + I ++ D ++V +    P +L+  +   IEEL+  +QK +   NR++ I +  +        +LAE+IA QL+ RV+FR+ ++ A++  ++A   G+++Q++GRL+G EIAR EW REGRVPL T+ A IDY +    T YGVLGIK+W+F  E
Sbjct:   20 SRWYASSKSYPTLLKEDDRIRKFIHKKY---------GSAGISDVLIARKADQLEVELKTARPGVLVGRQGSGIEELRSGIQKTVGDPNRQVRINVVEVERVDADAFLLAEYIAQQLEKRVAFRRTIRMAVQRAQRAGVLGLKIQVSGRLNGAEIARTEWTREGRVPLHTLRADIDYATKVASTTYGVLGIKVWVFKGE 209          
BLAST of CX069677 vs. ExPASy Swiss-Prot
Match: RS3_GLOVI (30S ribosomal protein S3 OS=Gloeobacter violaceus GN=rpsC PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 2.882e-35
Identity = 81/198 (40.91%), Postives = 126/198 (63.64%), Query Frame = 3
Query:    3 SLWFAKPKNYCEGLQEDQKIRNFIKNYIKKNIRISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNVQKELNCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDE 596
            S WFAK   Y   L ED KIR +I   +KK   ++SG  GIA ++I+++ D +++ I    P +++      I+EL+ N++K +    R+I I +  +        ++AE+I GQL+ RV+FR+A+++AI+  ++A  +GI+V +AGRL+G EIAR+EW REGR+PL T+ A IDY     +T YG LG+K+WIF  E
Sbjct:   20 SRWFAKAGEYPALLAEDHKIRAYI---VKK---LASG--GIADVDIERKADQVEITIRTARPGVVVGRGGAGIDELKANLEKLIG--RRQIRINVVEVQRVDAEAALIAEYIVGQLERRVAFRRAVRQAIQRAQRAGVQGIKVMVAGRLNGAEIARSEWTREGRIPLHTLRADIDYAYKIAQTTYGTLGVKVWIFRGE 207          
BLAST of CX069677 vs. ExPASy Swiss-Prot
Match: RS3_SYNS3 (30S ribosomal protein S3 OS=Synechococcus sp. (strain CC9311) GN=rpsC PE=3 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 3.764e-35
Identity = 78/199 (39.20%), Postives = 122/199 (61.31%), Query Frame = 3
Query:    3 SLWFAKPKNYCEGLQEDQKIRNFI-KNYIKKNIRISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNVQKELNCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDE 596
            S W+A  K+Y   LQED +IR FI K Y         G  GI+ + I ++ D ++V +    P +L+  +   IE+L+  +QK +   +R++ I +  +        +LAE+IA QL+ RV+FR+ ++ A++  ++A   G+++Q++GRL+G EIAR EW REGRVPL T+ A+IDY +    T YGVLGIK+W+F  E
Sbjct:   20 SRWYASSKSYPALLQEDDRIRKFIHKKY---------GSAGISDVLIARKADQLEVELKTARPGVLVGRQGSGIEDLRSGIQKTVGDSSRQVRINVVEVERVDADAFLLAEYIAQQLEKRVAFRRTIRMAVQRAQRAGVLGLKIQVSGRLNGAEIARTEWTREGRVPLHTLRAEIDYATKVASTTYGVLGIKVWVFKGE 209          
BLAST of CX069677 vs. ExPASy Swiss-Prot
Match: RS3_TRIEI (30S ribosomal protein S3 OS=Trichodesmium erythraeum (strain IMS101) GN=rpsC PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 4.916e-35
Identity = 78/198 (39.39%), Postives = 123/198 (62.12%), Query Frame = 3
Query:    3 SLWFAKPKNYCEGLQEDQKIRNFIKNYIKKNIRISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNVQKELNCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDE 596
            S W+A PKNY + LQED KIR ++K  +           GI++I ++++ + I + +    P +++      I+ L++ +QK L   NR+I I +  +T       ++ E+IA QL+ RVSFR+ +++AI   ++A  +GI++Q++GR++G EIAR E  REG VPL T+ A IDY   T +TIYG+LGIKIW+F  E
Sbjct:   20 SRWYADPKNYPDTLQEDHKIRQYVKATLAN--------AGISQIRVERKAEQIDLEVRTARPGVVVGRGGAGIDSLRVGLQKLLGS-NRQIRINVVEVTKVDTDAMLIGEYIAQQLEKRVSFRRVVRQAITRAQKAGVEGIKIQVSGRVNGAEIARTEVTREGSVPLHTLRANIDYAYCTAKTIYGILGIKIWVFKGE 208          
BLAST of CX069677 vs. ExPASy Swiss-Prot
Match: RS3_PROMM (30S ribosomal protein S3 OS=Prochlorococcus marinus (strain MIT 9313) GN=rpsC PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 4.916e-35
Identity = 80/199 (40.20%), Postives = 120/199 (60.30%), Query Frame = 3
Query:    3 SLWFAKPKNYCEGLQEDQKIRNFI-KNYIKKNIRISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNVQKELNCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDE 596
            S W+A  K Y   LQED +IR FI K Y         G  GI+ + I ++ D ++V +    P +L+  +   IEEL+  +QK +   +R++ I +  +        +LAE+IA QL+ RV+FR+ ++ A++  ++A   G+++Q+ GRL+G EIAR EW REGRVPL T+ A+IDY +    T YGVLGIK+WIF  E
Sbjct:   20 SRWYATSKMYPILLQEDDRIRRFIHKKY---------GAAGISDVLIARKADQLEVELKTARPGVLVGRQGSGIEELRTGIQKTIGDHSRQVRINVVEVERVDADAFLLAEYIAQQLEKRVAFRRTIRMAVQRAQRAGVLGLKIQVGGRLNGAEIARTEWTREGRVPLHTLRAEIDYATKVASTTYGVLGIKVWIFKGE 209          
BLAST of CX069677 vs. ExPASy Swiss-Prot
Match: RR3_CYAPA (Cyanelle 30S ribosomal protein S3 OS=Cyanophora paradoxa GN=rps3 PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 4.916e-35
Identity = 85/198 (42.93%), Postives = 124/198 (62.63%), Query Frame = 3
Query:    3 SLWFAKPKNYCEGLQEDQKIRNFIKNYIKKNIRISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNVQKELNCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDE 596
            S WFA PK Y   LQED  IR     YI+KN+  +    GIA+I IQ++ D I++ +    P +++    R IE L+  + K+L    ++I I +  +        ++ EFI  QL+ RV+FR+ ++KAI   ++   +GI++QI+GRL+G EIAR+EW REGRVPLQT+ A+IDY     +TIYGVLG+K+WIF  E
Sbjct:   20 SCWFANPKQYPTLLQEDHLIRQ----YIEKNLSNA----GIAQIYIQRKADRIELELRTARPGVVVGRGGRGIEVLRKGL-KDLLGEQKQIRINVIEVKQIDAEAALIGEFITQQLERRVAFRRIVRKAITRAQRRGIEGIKIQISGRLNGAEIARSEWSREGRVPLQTLRAEIDYSYKRAQTIYGVLGVKVWIFKGE 208          
BLAST of CX069677 vs. ExPASy Swiss-Prot
Match: RR3_CYACA (30S ribosomal protein S3, chloroplastic OS=Cyanidium caldarium GN=rps3 PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 4.916e-35
Identity = 79/195 (40.51%), Postives = 131/195 (67.18%), Query Frame = 3
Query:    3 SLWFAKPKNYCEGLQEDQKIRNFIKNYIKKNIRISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNVQKELNCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIF 587
            S WFA+P++Y   LQED+KIR+    YI  N+  +S    I+RI+I ++ + +++ ++   P +++      I+ L+ NV K L     ++ I I  +TNP     +LA FI+ QL++R +F++A+++AI+  +++D  GI++Q++GRL+G EIAR EWIREGRVPLQT+ A +DY + +  T +GV+G+K+WIF
Sbjct:   20 SSWFARPQSYTAILQEDKKIRD----YIFTNLLRAS----ISRIQINRQFNQVELQLHTSRPGVIIGRSGTGIDSLKRNV-KNLLSKQSQLKINIIDVTNPDIDAVLLACFISQQLESRTTFKRAVRQAIQRAQKSDIPGIKIQVSGRLNGAEIARTEWIREGRVPLQTLKADLDYATSSAYTSFGVVGVKVWIF 205          
BLAST of CX069677 vs. ExPASy Swiss-Prot
Match: RS3_PROM5 (30S ribosomal protein S3 OS=Prochlorococcus marinus (strain MIT 9515) GN=rpsC PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 8.385e-35
Identity = 78/198 (39.39%), Postives = 121/198 (61.11%), Query Frame = 3
Query:    3 SLWFAKPKNYCEGLQEDQKIRNFIKNYIKKNIRISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNVQKELNCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDE 596
            S WFA  K Y   LQED KIRNFI+       + SS   GI+ + I ++ D +++ +    P +++  +   IEEL+  +QK +    R++ I +  +        +LAE+IA QL+ RV+FR+ ++ A++  ++A   G+++Q+ GRL+G EIAR+EW REGRVPL T+ A++DY      T YGVLGIK+W+F  E
Sbjct:   20 SKWFATSKTYPILLQEDYKIRNFIQK------KYSSA--GISDVLIARKADQLELELKTARPGVIVGRQGSGIEELRSGIQKTIGDRTRQVRINVVEVERVDADAYLLAEYIAQQLEKRVAFRRTIRMALQRAQRAGVLGLKIQVGGRLNGAEIARSEWTREGRVPLHTLRAEVDYALREANTTYGVLGIKVWVFKGE 209          
BLAST of CX069677 vs. ExPASy Swiss-Prot
Match: RS3_PROM3 (30S ribosomal protein S3 OS=Prochlorococcus marinus (strain MIT 9303) GN=rpsC PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 8.385e-35
Identity = 80/199 (40.20%), Postives = 120/199 (60.30%), Query Frame = 3
Query:    3 SLWFAKPKNYCEGLQEDQKIRNFI-KNYIKKNIRISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNVQKELNCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDE 596
            S W+A  K Y   LQED +IR FI K Y         G  GI+ + I ++ D ++V +    P +L+  +   IEEL+  +QK +   +R++ I +  +        +LAE+IA QL+ RV+FR+ ++ A++  ++A   G+++Q+ GRL+G EIAR EW REGRVPL T+ A+IDY +    T YGVLGIK+WIF  E
Sbjct:   20 SRWYATSKMYPILLQEDDRIRRFIHKKY---------GAAGISDVLIARKADQLEVELKTARPGVLVGRQGSGIEELRTGIQKTIGDHSRQVRINVVEVERVDADAFLLAEYIAQQLEKRVAFRRTIRMAVQRAQRAGVLGLKIQVGGRLNGAEIARNEWTREGRVPLHTLRAEIDYATKVASTTYGVLGIKVWIFKGE 209          
BLAST of CX069677 vs. ExPASy Swiss-Prot
Match: RS3_SYNR3 (30S ribosomal protein S3 OS=Synechococcus sp. (strain RCC307) GN=rpsC PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 1.095e-34
Identity = 77/198 (38.89%), Postives = 121/198 (61.11%), Query Frame = 3
Query:    3 SLWFAKPKNYCEGLQEDQKIRNFIKNYIKKNIRISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNVQKELNCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDE 596
            S W+A  + Y   LQED++IR F+      N + +S   GI+ + I ++ D ++V +    P +L+  +   IEEL+  +QK L   +R++ I +  +        +LAE+IA QL+ RV+FR+ ++ A++  ++A   G+++Q+ GRL+G EIAR EW REGRVPL T+ A IDY +    T YGVLGIK+W+F  E
Sbjct:   20 SRWYAPARTYPTLLQEDERIRKFV------NKKYASA--GISSVLIARKADQLEVELKTARPGVLVGRQGSGIEELRAGIQKTLGDKSRQVRINVVEVERVDADAFLLAEYIAQQLEKRVAFRRVIRMAVQRAQRAGVLGLKIQVGGRLNGAEIARTEWTREGRVPLHTLRADIDYATKVASTTYGVLGIKVWVFKGE 209          
The following BLAST results are available for this feature:
BLAST of CX069677 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RS3_SYNPW2.207e-3539.7030S ribosomal protein S3 OS=Synechococcus sp. (str... [more]
RS3_GLOVI2.882e-3540.9130S ribosomal protein S3 OS=Gloeobacter violaceus ... [more]
RS3_SYNS33.764e-3539.2030S ribosomal protein S3 OS=Synechococcus sp. (str... [more]
RS3_TRIEI4.916e-3539.3930S ribosomal protein S3 OS=Trichodesmium erythrae... [more]
RS3_PROMM4.916e-3540.2030S ribosomal protein S3 OS=Prochlorococcus marinu... [more]
RR3_CYAPA4.916e-3542.93Cyanelle 30S ribosomal protein S3 OS=Cyanophora pa... [more]
RR3_CYACA4.916e-3540.5130S ribosomal protein S3, chloroplastic OS=Cyanidi... [more]
RS3_PROM58.385e-3539.3930S ribosomal protein S3 OS=Prochlorococcus marinu... [more]
RS3_PROM38.385e-3540.2030S ribosomal protein S3 OS=Prochlorococcus marinu... [more]
RS3_SYNR31.095e-3438.8930S ribosomal protein S3 OS=Synechococcus sp. (str... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_12B02_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-12B02-D4-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069677 ID=CX069677; Name=CX069677; organism=Citrus sinensis; type=EST; length=821bp
ATTCTCTTTGGTTTGCAAAACCAAAAAACTATTGCGAGGGTCTACAAGAA
GATCAAAAAATACGAAACTTTATTAAGAATTATATAAAAAAAAATATCAG
AATATCTTCCGGTGTTGAGGGAATTGCACGGATAGAGATTCAAAAAAGAA
TTGATCTAATTCAAGTTATAATCTATATAGGGTTCCCAAAATTATTACTA
GAAAATAGACCGCGAAGAATTGAAGAATTACAGATGAATGTACAAAAAGA
ACTTAATTGTGTGAATCGAAAAATAAACATTGCTATTACACGAATTACAA
ATCCTTATGGACACCCCAATATTCTTGCCGAATTTATAGCCGGACAATTA
AAAAATAGAGTTTCTTTTCGAAAAGCAATGAAAAAAGCTATTGAATTAAC
GGAACAGGCCGATACAAAAGGAATTCAAGTACAAATTGCAGGGCGTCTTG
ACGGAAAAGAAATTGCGCGCGCCGAATGGATCAGAGAAGGTAGAGTTCCT
CTACAAACCATTGGAGCTAAAATTGATTATTGTTCCTATACGGTTCGAAC
TATCTACGGGGTATTGGGAATCAAAATTTGGATATTTGTAGACGAAAAAA
AATAAGAGTTTACGGGTCTTTAGAGCCCCCCCATTAATGGAAATAAACCA
AACAAAGAACGAGCTCTTTTTATCTTCAATCAAAACAAAAATGAGAAATT
CCGCAATTCTATAGGGTTGAATAAAAATTCGATTGATTTTTTTTTTTTTA
TATAATTGCTATGCTTAGTGTGCGACTCGTTGGTTTTTTTTAGGGCTAGG
ATTCCAAAAAATGGACCGTCC
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