CX069677
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX069677 vs. ExPASy Swiss-Prot
Match: RS3_SYNPW (30S ribosomal protein S3 OS=Synechococcus sp. (strain WH7803) GN=rpsC PE=3 SV=1) HSP 1 Score: 149.443 bits (376), Expect = 2.207e-35 Identity = 79/199 (39.70%), Postives = 121/199 (60.80%), Query Frame = 3 Query: 3 SLWFAKPKNYCEGLQEDQKIRNFI-KNYIKKNIRISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNVQKELNCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDE 596 S W+A K+Y L+ED +IR FI K Y G GI+ + I ++ D ++V + P +L+ + IEEL+ +QK + NR++ I + + +LAE+IA QL+ RV+FR+ ++ A++ ++A G+++Q++GRL+G EIAR EW REGRVPL T+ A IDY + T YGVLGIK+W+F E Sbjct: 20 SRWYASSKSYPTLLKEDDRIRKFIHKKY---------GSAGISDVLIARKADQLEVELKTARPGVLVGRQGSGIEELRSGIQKTVGDPNRQVRINVVEVERVDADAFLLAEYIAQQLEKRVAFRRTIRMAVQRAQRAGVLGLKIQVSGRLNGAEIARTEWTREGRVPLHTLRADIDYATKVASTTYGVLGIKVWVFKGE 209
BLAST of CX069677 vs. ExPASy Swiss-Prot
Match: RS3_GLOVI (30S ribosomal protein S3 OS=Gloeobacter violaceus GN=rpsC PE=3 SV=1) HSP 1 Score: 149.058 bits (375), Expect = 2.882e-35 Identity = 81/198 (40.91%), Postives = 126/198 (63.64%), Query Frame = 3 Query: 3 SLWFAKPKNYCEGLQEDQKIRNFIKNYIKKNIRISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNVQKELNCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDE 596 S WFAK Y L ED KIR +I +KK ++SG GIA ++I+++ D +++ I P +++ I+EL+ N++K + R+I I + + ++AE+I GQL+ RV+FR+A+++AI+ ++A +GI+V +AGRL+G EIAR+EW REGR+PL T+ A IDY +T YG LG+K+WIF E Sbjct: 20 SRWFAKAGEYPALLAEDHKIRAYI---VKK---LASG--GIADVDIERKADQVEITIRTARPGVVVGRGGAGIDELKANLEKLIG--RRQIRINVVEVQRVDAEAALIAEYIVGQLERRVAFRRAVRQAIQRAQRAGVQGIKVMVAGRLNGAEIARSEWTREGRIPLHTLRADIDYAYKIAQTTYGTLGVKVWIFRGE 207
BLAST of CX069677 vs. ExPASy Swiss-Prot
Match: RS3_SYNS3 (30S ribosomal protein S3 OS=Synechococcus sp. (strain CC9311) GN=rpsC PE=3 SV=1) HSP 1 Score: 148.673 bits (374), Expect = 3.764e-35 Identity = 78/199 (39.20%), Postives = 122/199 (61.31%), Query Frame = 3 Query: 3 SLWFAKPKNYCEGLQEDQKIRNFI-KNYIKKNIRISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNVQKELNCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDE 596 S W+A K+Y LQED +IR FI K Y G GI+ + I ++ D ++V + P +L+ + IE+L+ +QK + +R++ I + + +LAE+IA QL+ RV+FR+ ++ A++ ++A G+++Q++GRL+G EIAR EW REGRVPL T+ A+IDY + T YGVLGIK+W+F E Sbjct: 20 SRWYASSKSYPALLQEDDRIRKFIHKKY---------GSAGISDVLIARKADQLEVELKTARPGVLVGRQGSGIEDLRSGIQKTVGDSSRQVRINVVEVERVDADAFLLAEYIAQQLEKRVAFRRTIRMAVQRAQRAGVLGLKIQVSGRLNGAEIARTEWTREGRVPLHTLRAEIDYATKVASTTYGVLGIKVWVFKGE 209
BLAST of CX069677 vs. ExPASy Swiss-Prot
Match: RS3_TRIEI (30S ribosomal protein S3 OS=Trichodesmium erythraeum (strain IMS101) GN=rpsC PE=3 SV=1) HSP 1 Score: 148.288 bits (373), Expect = 4.916e-35 Identity = 78/198 (39.39%), Postives = 123/198 (62.12%), Query Frame = 3 Query: 3 SLWFAKPKNYCEGLQEDQKIRNFIKNYIKKNIRISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNVQKELNCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDE 596 S W+A PKNY + LQED KIR ++K + GI++I ++++ + I + + P +++ I+ L++ +QK L NR+I I + +T ++ E+IA QL+ RVSFR+ +++AI ++A +GI++Q++GR++G EIAR E REG VPL T+ A IDY T +TIYG+LGIKIW+F E Sbjct: 20 SRWYADPKNYPDTLQEDHKIRQYVKATLAN--------AGISQIRVERKAEQIDLEVRTARPGVVVGRGGAGIDSLRVGLQKLLGS-NRQIRINVVEVTKVDTDAMLIGEYIAQQLEKRVSFRRVVRQAITRAQKAGVEGIKIQVSGRVNGAEIARTEVTREGSVPLHTLRANIDYAYCTAKTIYGILGIKIWVFKGE 208
BLAST of CX069677 vs. ExPASy Swiss-Prot
Match: RS3_PROMM (30S ribosomal protein S3 OS=Prochlorococcus marinus (strain MIT 9313) GN=rpsC PE=3 SV=1) HSP 1 Score: 148.288 bits (373), Expect = 4.916e-35 Identity = 80/199 (40.20%), Postives = 120/199 (60.30%), Query Frame = 3 Query: 3 SLWFAKPKNYCEGLQEDQKIRNFI-KNYIKKNIRISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNVQKELNCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDE 596 S W+A K Y LQED +IR FI K Y G GI+ + I ++ D ++V + P +L+ + IEEL+ +QK + +R++ I + + +LAE+IA QL+ RV+FR+ ++ A++ ++A G+++Q+ GRL+G EIAR EW REGRVPL T+ A+IDY + T YGVLGIK+WIF E Sbjct: 20 SRWYATSKMYPILLQEDDRIRRFIHKKY---------GAAGISDVLIARKADQLEVELKTARPGVLVGRQGSGIEELRTGIQKTIGDHSRQVRINVVEVERVDADAFLLAEYIAQQLEKRVAFRRTIRMAVQRAQRAGVLGLKIQVGGRLNGAEIARTEWTREGRVPLHTLRAEIDYATKVASTTYGVLGIKVWIFKGE 209
BLAST of CX069677 vs. ExPASy Swiss-Prot
Match: RR3_CYAPA (Cyanelle 30S ribosomal protein S3 OS=Cyanophora paradoxa GN=rps3 PE=3 SV=1) HSP 1 Score: 148.288 bits (373), Expect = 4.916e-35 Identity = 85/198 (42.93%), Postives = 124/198 (62.63%), Query Frame = 3 Query: 3 SLWFAKPKNYCEGLQEDQKIRNFIKNYIKKNIRISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNVQKELNCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDE 596 S WFA PK Y LQED IR YI+KN+ + GIA+I IQ++ D I++ + P +++ R IE L+ + K+L ++I I + + ++ EFI QL+ RV+FR+ ++KAI ++ +GI++QI+GRL+G EIAR+EW REGRVPLQT+ A+IDY +TIYGVLG+K+WIF E Sbjct: 20 SCWFANPKQYPTLLQEDHLIRQ----YIEKNLSNA----GIAQIYIQRKADRIELELRTARPGVVVGRGGRGIEVLRKGL-KDLLGEQKQIRINVIEVKQIDAEAALIGEFITQQLERRVAFRRIVRKAITRAQRRGIEGIKIQISGRLNGAEIARSEWSREGRVPLQTLRAEIDYSYKRAQTIYGVLGVKVWIFKGE 208
BLAST of CX069677 vs. ExPASy Swiss-Prot
Match: RR3_CYACA (30S ribosomal protein S3, chloroplastic OS=Cyanidium caldarium GN=rps3 PE=3 SV=1) HSP 1 Score: 148.288 bits (373), Expect = 4.916e-35 Identity = 79/195 (40.51%), Postives = 131/195 (67.18%), Query Frame = 3 Query: 3 SLWFAKPKNYCEGLQEDQKIRNFIKNYIKKNIRISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNVQKELNCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIF 587 S WFA+P++Y LQED+KIR+ YI N+ +S I+RI+I ++ + +++ ++ P +++ I+ L+ NV K L ++ I I +TNP +LA FI+ QL++R +F++A+++AI+ +++D GI++Q++GRL+G EIAR EWIREGRVPLQT+ A +DY + + T +GV+G+K+WIF Sbjct: 20 SSWFARPQSYTAILQEDKKIRD----YIFTNLLRAS----ISRIQINRQFNQVELQLHTSRPGVIIGRSGTGIDSLKRNV-KNLLSKQSQLKINIIDVTNPDIDAVLLACFISQQLESRTTFKRAVRQAIQRAQKSDIPGIKIQVSGRLNGAEIARTEWIREGRVPLQTLKADLDYATSSAYTSFGVVGVKVWIF 205
BLAST of CX069677 vs. ExPASy Swiss-Prot
Match: RS3_PROM5 (30S ribosomal protein S3 OS=Prochlorococcus marinus (strain MIT 9515) GN=rpsC PE=3 SV=1) HSP 1 Score: 147.517 bits (371), Expect = 8.385e-35 Identity = 78/198 (39.39%), Postives = 121/198 (61.11%), Query Frame = 3 Query: 3 SLWFAKPKNYCEGLQEDQKIRNFIKNYIKKNIRISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNVQKELNCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDE 596 S WFA K Y LQED KIRNFI+ + SS GI+ + I ++ D +++ + P +++ + IEEL+ +QK + R++ I + + +LAE+IA QL+ RV+FR+ ++ A++ ++A G+++Q+ GRL+G EIAR+EW REGRVPL T+ A++DY T YGVLGIK+W+F E Sbjct: 20 SKWFATSKTYPILLQEDYKIRNFIQK------KYSSA--GISDVLIARKADQLELELKTARPGVIVGRQGSGIEELRSGIQKTIGDRTRQVRINVVEVERVDADAYLLAEYIAQQLEKRVAFRRTIRMALQRAQRAGVLGLKIQVGGRLNGAEIARSEWTREGRVPLHTLRAEVDYALREANTTYGVLGIKVWVFKGE 209
BLAST of CX069677 vs. ExPASy Swiss-Prot
Match: RS3_PROM3 (30S ribosomal protein S3 OS=Prochlorococcus marinus (strain MIT 9303) GN=rpsC PE=3 SV=1) HSP 1 Score: 147.517 bits (371), Expect = 8.385e-35 Identity = 80/199 (40.20%), Postives = 120/199 (60.30%), Query Frame = 3 Query: 3 SLWFAKPKNYCEGLQEDQKIRNFI-KNYIKKNIRISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNVQKELNCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDE 596 S W+A K Y LQED +IR FI K Y G GI+ + I ++ D ++V + P +L+ + IEEL+ +QK + +R++ I + + +LAE+IA QL+ RV+FR+ ++ A++ ++A G+++Q+ GRL+G EIAR EW REGRVPL T+ A+IDY + T YGVLGIK+WIF E Sbjct: 20 SRWYATSKMYPILLQEDDRIRRFIHKKY---------GAAGISDVLIARKADQLEVELKTARPGVLVGRQGSGIEELRTGIQKTIGDHSRQVRINVVEVERVDADAFLLAEYIAQQLEKRVAFRRTIRMAVQRAQRAGVLGLKIQVGGRLNGAEIARNEWTREGRVPLHTLRAEIDYATKVASTTYGVLGIKVWIFKGE 209
BLAST of CX069677 vs. ExPASy Swiss-Prot
Match: RS3_SYNR3 (30S ribosomal protein S3 OS=Synechococcus sp. (strain RCC307) GN=rpsC PE=3 SV=1) HSP 1 Score: 147.132 bits (370), Expect = 1.095e-34 Identity = 77/198 (38.89%), Postives = 121/198 (61.11%), Query Frame = 3 Query: 3 SLWFAKPKNYCEGLQEDQKIRNFIKNYIKKNIRISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNVQKELNCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDE 596 S W+A + Y LQED++IR F+ N + +S GI+ + I ++ D ++V + P +L+ + IEEL+ +QK L +R++ I + + +LAE+IA QL+ RV+FR+ ++ A++ ++A G+++Q+ GRL+G EIAR EW REGRVPL T+ A IDY + T YGVLGIK+W+F E Sbjct: 20 SRWYAPARTYPTLLQEDERIRKFV------NKKYASA--GISSVLIARKADQLEVELKTARPGVLVGRQGSGIEELRAGIQKTLGDKSRQVRINVVEVERVDADAFLLAEYIAQQLEKRVAFRRVIRMAVQRAQRAGVLGLKIQVGGRLNGAEIARTEWTREGRVPLHTLRADIDYATKVASTTYGVLGIKVWVFKGE 209 The following BLAST results are available for this feature:
BLAST of CX069677 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CX069677 ID=CX069677; Name=CX069677; organism=Citrus sinensis; type=EST; length=821bpback to top |