CX069677

Overview
NameCX069677
Unique NameCX069677
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length821
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4021 contig Csv1_Contig4021:246..1066. BLAST: Citrus Unigene V1 Contigs to TAIR9
Homology
[Close]
BLAST of CX069677 vs. ExPASy Swiss-Prot
Match: RR3_SOLTU (30S ribosomal protein S3, chloroplastic OS=Solanum tuberosum GN=rps3 PE=3 SV=1)

HSP 1 Score: 348.591 bits (893), Expect = 2.478e-95
Identity = 168/199 (84.42%), Postives = 189/199 (94.97%), Query Frame = 3 
Query:    3 SLWFAKPKNYCEGLQEDQKIRNFIKNYIKKNIRISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNVQKELNCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDEK 599
            SLWF++PKNY EGLQED+KIR+ IKNY++KN+R SSG+EGIARIEIQKRIDLIQVII++GFPKLL+E+RPR IEELQM +QKE NCVNRK+NIA+TRI  PYG+PNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQ+QIAGR+DGKEIAR EWIREGRVPLQTI AKIDYCSYTVRTIYG+LGIKIWIF+DE+
Sbjct:   20 SLWFSQPKNYSEGLQEDKKIRDCIKNYVQKNMRTSSGIEGIARIEIQKRIDLIQVIIFMGFPKLLIESRPRGIEELQMTLQKEFNCVNRKLNIAVTRIAKPYGNPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQIQIAGRIDGKEIARVEWIREGRVPLQTIRAKIDYCSYTVRTIYGILGIKIWIFLDEE 218
[Close]
BLAST of CX069677 vs. ExPASy Swiss-Prot
Match: RR3_SOLLC (30S ribosomal protein S3, chloroplastic OS=Solanum lycopersicum GN=rps3 PE=3 SV=1)

HSP 1 Score: 348.591 bits (893), Expect = 2.478e-95
Identity = 168/199 (84.42%), Postives = 189/199 (94.97%), Query Frame = 3 
Query:    3 SLWFAKPKNYCEGLQEDQKIRNFIKNYIKKNIRISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNVQKELNCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDEK 599
            SLWF++PKNY EGLQED+KIR+ IKNY++KN+R SSG+EGIARIEIQKRIDLIQVII++GFPKLL+E+RPR IEELQM +QKE NCVNRK+NIA+TRI  PYG+PNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQ+QIAGR+DGKEIAR EWIREGRVPLQTI AKIDYCSYTVRTIYG+LGIKIWIF+DE+
Sbjct:   20 SLWFSQPKNYSEGLQEDKKIRDCIKNYVQKNMRTSSGIEGIARIEIQKRIDLIQVIIFMGFPKLLIESRPRGIEELQMTLQKEFNCVNRKLNIAVTRIAKPYGNPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQIQIAGRIDGKEIARVEWIREGRVPLQTIRAKIDYCSYTVRTIYGILGIKIWIFLDEE 218
[Close]
BLAST of CX069677 vs. ExPASy Swiss-Prot
Match: RR3_SOLBU (30S ribosomal protein S3, chloroplastic OS=Solanum bulbocastanum GN=rps3 PE=3 SV=1)

HSP 1 Score: 348.591 bits (893), Expect = 2.478e-95
Identity = 168/199 (84.42%), Postives = 189/199 (94.97%), Query Frame = 3 
Query:    3 SLWFAKPKNYCEGLQEDQKIRNFIKNYIKKNIRISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNVQKELNCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDEK 599
            SLWF++PKNY EGLQED+KIR+ IKNY++KN+R SSG+EGIARIEIQKRIDLIQVII++GFPKLL+E+RPR IEELQM +QKE NCVNRK+NIA+TRI  PYG+PNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQ+QIAGR+DGKEIAR EWIREGRVPLQTI AKIDYCSYTVRTIYG+LGIKIWIF+DE+
Sbjct:   20 SLWFSQPKNYSEGLQEDKKIRDCIKNYVQKNMRTSSGIEGIARIEIQKRIDLIQVIIFMGFPKLLIESRPRGIEELQMTLQKEFNCVNRKLNIAVTRIAKPYGNPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQIQIAGRIDGKEIARVEWIREGRVPLQTIRAKIDYCSYTVRTIYGILGIKIWIFLDEE 218
[Close]
BLAST of CX069677 vs. ExPASy Swiss-Prot
Match: RR3_PANGI (30S ribosomal protein S3, chloroplastic OS=Panax ginseng GN=rps3 PE=3 SV=1)

HSP 1 Score: 348.206 bits (892), Expect = 3.237e-95
Identity = 172/197 (87.31%), Postives = 186/197 (94.42%), Query Frame = 3 
Query:    3 SLWFAKPKNYCEGLQEDQKIRNFIKNYIKKNIRISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNVQKELNCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVD 593
            SLWFA+PKNY EGLQEDQKIR+FIKNY++KN++ISS VEGIARIEIQKRIDLIQVIIY+GFPKLL+E+RPR IEELQMN+QKE   VN+K+NIAITRI  PYG PNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGR+DGKEIAR EWIREGRVPLQTI AKIDYCSYTVRTIYGVLGIKIWIF+D
Sbjct:   20 SLWFAQPKNYSEGLQEDQKIRDFIKNYVQKNMKISSSVEGIARIEIQKRIDLIQVIIYMGFPKLLIESRPRGIEELQMNLQKEFKSVNQKLNIAITRIAKPYGSPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRIDGKEIARVEWIREGRVPLQTIRAKIDYCSYTVRTIYGVLGIKIWIFID 216
[Close]
BLAST of CX069677 vs. ExPASy Swiss-Prot
Match: RR3_BUXMI (30S ribosomal protein S3, chloroplastic OS=Buxus microphylla GN=rps3 PE=3 SV=1)

HSP 1 Score: 347.051 bits (889), Expect = 7.211e-95
Identity = 172/199 (86.43%), Postives = 186/199 (93.47%), Query Frame = 3 
Query:    3 SLWFAKPKNYCEGLQEDQKIRNFIKNYIKKNIRISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNVQKELNCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDEK 599
            SLWFA+PK+Y EGLQEDQKIR+ IKNY++KN+RISSG EGIARIEIQKRIDLIQVIIY+GFPKLL+E RPR +EELQ+NVQKE N VNRK+NIAITRI  PYG PNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQ+QIAGR+DGKEIAR EWIREGRVPLQTI AKI YCSYTVRTIYGVLGIKIWIFVDE+
Sbjct:   20 SLWFAQPKSYSEGLQEDQKIRDCIKNYVQKNMRISSGAEGIARIEIQKRIDLIQVIIYMGFPKLLIEGRPRGVEELQINVQKEFNSVNRKLNIAITRIAKPYGQPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQIQIAGRIDGKEIARVEWIREGRVPLQTIRAKIYYCSYTVRTIYGVLGIKIWIFVDEE 218
[Close]
BLAST of CX069677 vs. ExPASy Swiss-Prot
Match: RR3_TOBAC (30S ribosomal protein S3, chloroplastic OS=Nicotiana tabacum GN=rps3 PE=3 SV=1)

HSP 1 Score: 346.665 bits (888), Expect = 9.418e-95
Identity = 169/199 (84.92%), Postives = 188/199 (94.47%), Query Frame = 3 
Query:    3 SLWFAKPKNYCEGLQEDQKIRNFIKNYIKKNIRISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNVQKELNCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDEK 599
            SLWF++PKNY EGLQEDQKIR+ IKNY++KN+R SSGVEGIARIEIQKRIDLIQVII++GFPKLL+E+RPR IEELQ  +QKE +CVNRK+NIA+TRI  PYG+PNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQ+QIAGR+DGKEIAR EWIREGRVPLQTI AKIDYCSYTVRTIYGVLGIKIWIF+DE+
Sbjct:   20 SLWFSQPKNYSEGLQEDQKIRDCIKNYVQKNMRTSSGVEGIARIEIQKRIDLIQVIIFMGFPKLLIESRPRGIEELQTTLQKEFHCVNRKLNIAVTRIAKPYGNPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQIQIAGRIDGKEIARVEWIREGRVPLQTIRAKIDYCSYTVRTIYGVLGIKIWIFLDEE 218
[Close]
BLAST of CX069677 vs. ExPASy Swiss-Prot
Match: RR3_NICSY (30S ribosomal protein S3, chloroplastic OS=Nicotiana sylvestris GN=rps3 PE=3 SV=1)

HSP 1 Score: 346.665 bits (888), Expect = 9.418e-95
Identity = 169/199 (84.92%), Postives = 188/199 (94.47%), Query Frame = 3 
Query:    3 SLWFAKPKNYCEGLQEDQKIRNFIKNYIKKNIRISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNVQKELNCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDEK 599
            SLWF++PKNY EGLQEDQKIR+ IKNY++KN+R SSGVEGIARIEIQKRIDLIQVII++GFPKLL+E+RPR IEELQ  +QKE +CVNRK+NIA+TRI  PYG+PNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQ+QIAGR+DGKEIAR EWIREGRVPLQTI AKIDYCSYTVRTIYGVLGIKIWIF+DE+
Sbjct:   20 SLWFSQPKNYSEGLQEDQKIRDCIKNYVQKNMRTSSGVEGIARIEIQKRIDLIQVIIFMGFPKLLIESRPRGIEELQTTLQKEFHCVNRKLNIAVTRIAKPYGNPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQIQIAGRIDGKEIARVEWIREGRVPLQTIRAKIDYCSYTVRTIYGVLGIKIWIFLDEE 218
[Close]
BLAST of CX069677 vs. ExPASy Swiss-Prot
Match: RR3_POPAL (30S ribosomal protein S3, chloroplastic OS=Populus alba GN=rps3 PE=3 SV=1)

HSP 1 Score: 346.28 bits (887), Expect = 1.230e-94
Identity = 167/199 (83.92%), Postives = 189/199 (94.97%), Query Frame = 3 
Query:    3 SLWFAKPKNYCEGLQEDQKIRNFIKNYIKKNIRISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNVQKELNCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDEK 599
            SLWFA+PKN+ EGLQEDQKIRN IKNY++KN++ISSGVEGI  IEIQKRID+IQVIIY+GFPK L E +P+RI+ELQ+NVQKELNC+NRK+NI+ITRI NPY HPN+LAEFIAGQLKNRVSFRKAMKKAIELTEQ++TKGIQVQIAGRLDGKEIARAEW+REGRVPLQT+ AKI+YCSYTVRTIYGVLGIKIWIFVDE+
Sbjct:   20 SLWFAQPKNFSEGLQEDQKIRNCIKNYVQKNMKISSGVEGIGHIEIQKRIDVIQVIIYLGFPKFLTEGKPKRIKELQINVQKELNCMNRKLNISITRIENPYMHPNVLAEFIAGQLKNRVSFRKAMKKAIELTEQSNTKGIQVQIAGRLDGKEIARAEWVREGRVPLQTLRAKINYCSYTVRTIYGVLGIKIWIFVDEE 218
[Close]
BLAST of CX069677 vs. ExPASy Swiss-Prot
Match: RR3_POPTR (30S ribosomal protein S3, chloroplastic OS=Populus trichocarpa GN=rps3 PE=3 SV=1)

HSP 1 Score: 345.895 bits (886), Expect = 1.606e-94
Identity = 167/199 (83.92%), Postives = 189/199 (94.97%), Query Frame = 3 
Query:    3 SLWFAKPKNYCEGLQEDQKIRNFIKNYIKKNIRISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNVQKELNCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDEK 599
            SLWFA+PKN+ EGLQEDQKIRN IKNY++KN++ISSGVEGI  IEIQKRID+IQVIIY+GFPK L E +P+RI+ELQ+NVQKELNC+NRK+NI+ITRI NPY HPN+LAEFIAGQLKNRVSFRKAMKKAIELTEQ++TKGIQVQIAGRLDGKEIARAEW+REGRVPLQT+ AKI+YCSYTVRTIYGVLGIKIWIFVDE+
Sbjct:   20 SLWFAQPKNFFEGLQEDQKIRNCIKNYVQKNMKISSGVEGIGHIEIQKRIDVIQVIIYLGFPKFLTEGKPKRIKELQINVQKELNCMNRKLNISITRIENPYMHPNVLAEFIAGQLKNRVSFRKAMKKAIELTEQSNTKGIQVQIAGRLDGKEIARAEWVREGRVPLQTLRAKINYCSYTVRTIYGVLGIKIWIFVDEE 218
[Close]
BLAST of CX069677 vs. ExPASy Swiss-Prot
Match: RR3_NICTO (30S ribosomal protein S3, chloroplastic OS=Nicotiana tomentosiformis GN=rps3 PE=3 SV=1)

HSP 1 Score: 345.895 bits (886), Expect = 1.606e-94
Identity = 168/199 (84.42%), Postives = 188/199 (94.47%), Query Frame = 3 
Query:    3 SLWFAKPKNYCEGLQEDQKIRNFIKNYIKKNIRISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNVQKELNCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDEK 599
            SLWF++PKNY EGLQEDQKIR+ IKNY++KN+R SSGVEGIARIEI+KRIDLIQVII++GFPKLL+E+RPR IEELQ  +QKE NCVNRK+NIA+TRI  PYG+PNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQ+QIAGR+DGKEIAR EWIREGRVPLQTI AKIDYCSYTVRTIYGVLGIKIWIF+D++
Sbjct:   20 SLWFSQPKNYSEGLQEDQKIRDCIKNYVQKNMRTSSGVEGIARIEIKKRIDLIQVIIFMGFPKLLIESRPRGIEELQTTLQKEFNCVNRKLNIAVTRIAKPYGNPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQIQIAGRIDGKEIARVEWIREGRVPLQTIRAKIDYCSYTVRTIYGVLGIKIWIFLDQE 218
The following BLAST results are available for this feature:
BLAST of CX069677 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RR3_SOLTU2.478e-9584.4230S ribosomal protein S3, chloroplastic OS=Solanum... [more]
RR3_SOLLC2.478e-9584.4230S ribosomal protein S3, chloroplastic OS=Solanum... [more]
RR3_SOLBU2.478e-9584.4230S ribosomal protein S3, chloroplastic OS=Solanum... [more]
RR3_PANGI3.237e-9587.3130S ribosomal protein S3, chloroplastic OS=Panax g... [more]
RR3_BUXMI7.211e-9586.4330S ribosomal protein S3, chloroplastic OS=Buxus m... [more]
RR3_TOBAC9.418e-9584.9230S ribosomal protein S3, chloroplastic OS=Nicotia... [more]
RR3_NICSY9.418e-9584.9230S ribosomal protein S3, chloroplastic OS=Nicotia... [more]
RR3_POPAL1.230e-9483.9230S ribosomal protein S3, chloroplastic OS=Populus... [more]
RR3_POPTR1.606e-9483.9230S ribosomal protein S3, chloroplastic OS=Populus... [more]
RR3_NICTO1.606e-9484.4230S ribosomal protein S3, chloroplastic OS=Nicotia... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_12B02_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-12B02-D4-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069677 ID=CX069677; Name=CX069677; organism=Citrus sinensis; type=EST; length=821bp
ATTCTCTTTGGTTTGCAAAACCAAAAAACTATTGCGAGGGTCTACAAGAA
GATCAAAAAATACGAAACTTTATTAAGAATTATATAAAAAAAAATATCAG
AATATCTTCCGGTGTTGAGGGAATTGCACGGATAGAGATTCAAAAAAGAA
TTGATCTAATTCAAGTTATAATCTATATAGGGTTCCCAAAATTATTACTA
GAAAATAGACCGCGAAGAATTGAAGAATTACAGATGAATGTACAAAAAGA
ACTTAATTGTGTGAATCGAAAAATAAACATTGCTATTACACGAATTACAA
ATCCTTATGGACACCCCAATATTCTTGCCGAATTTATAGCCGGACAATTA
AAAAATAGAGTTTCTTTTCGAAAAGCAATGAAAAAAGCTATTGAATTAAC
GGAACAGGCCGATACAAAAGGAATTCAAGTACAAATTGCAGGGCGTCTTG
ACGGAAAAGAAATTGCGCGCGCCGAATGGATCAGAGAAGGTAGAGTTCCT
CTACAAACCATTGGAGCTAAAATTGATTATTGTTCCTATACGGTTCGAAC
TATCTACGGGGTATTGGGAATCAAAATTTGGATATTTGTAGACGAAAAAA
AATAAGAGTTTACGGGTCTTTAGAGCCCCCCCATTAATGGAAATAAACCA
AACAAAGAACGAGCTCTTTTTATCTTCAATCAAAACAAAAATGAGAAATT
CCGCAATTCTATAGGGTTGAATAAAAATTCGATTGATTTTTTTTTTTTTA
TATAATTGCTATGCTTAGTGTGCGACTCGTTGGTTTTTTTTAGGGCTAGG
ATTCCAAAAAATGGACCGTCC
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