CX069677

Overview
NameCX069677
Unique NameCX069677
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length821
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX069677 vs. ExPASy Swiss-Prot
Match: RR3_SPIOL (30S ribosomal protein S3, chloroplastic OS=Spinacia oleracea GN=rps3 PE=1 SV=3)

HSP 1 Score: 343.199 bits (879), Expect = 1.041e-93
Identity = 167/199 (83.92%), Postives = 188/199 (94.47%), Query Frame = 3
Query:    3 SLWFAKPKNYCEGLQEDQKIRNFIKNYIKKNIRISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNVQKELNCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDEK 599
            SLWF++PKNY EGLQEDQKIR+ IKNY++KN + SSGVEGIARIEIQKRIDLIQVII++GFPKLL+ENRP+ +E+L++NVQKELNCVNRK+NIAITRI  PYG PNILAEFIAGQLK+RVSFRKAMKKAIELTEQADTKGIQ+QIAGR+DGKEIAR EWIREGRVPLQTI AKIDYC+YTVRTIYGVLGIKIWIF+ E+
Sbjct:   20 SLWFSQPKNYAEGLQEDQKIRDCIKNYVQKNTKTSSGVEGIARIEIQKRIDLIQVIIHMGFPKLLIENRPQGVEDLKINVQKELNCVNRKLNIAITRIAKPYGDPNILAEFIAGQLKSRVSFRKAMKKAIELTEQADTKGIQIQIAGRIDGKEIARIEWIREGRVPLQTIRAKIDYCAYTVRTIYGVLGIKIWIFMGEE 218          
BLAST of CX069677 vs. ExPASy Swiss-Prot
Match: RR3_LACSA (30S ribosomal protein S3, chloroplastic OS=Lactuca sativa GN=rps3 PE=3 SV=1)

HSP 1 Score: 343.199 bits (879), Expect = 1.041e-93
Identity = 167/197 (84.77%), Postives = 186/197 (94.42%), Query Frame = 3
Query:    3 SLWFAKPKNYCEGLQEDQKIRNFIKNYIKKNIRISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNVQKELNCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVD 593
            SLWFA+PKNY EGLQED+KIR +I+NY++KN++ SSGVEGIARIEIQKRIDLIQ+IIY+GFPK+L+E+RPR IEELQMN+QKE + VNRK+NIAITRI  PYG+PNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGR+DGKEIAR EWIREGRVPLQTI AKIDYC YTVRTIYGVLGIKIWIF+D
Sbjct:   20 SLWFAQPKNYSEGLQEDKKIRTYIQNYVQKNMKTSSGVEGIARIEIQKRIDLIQIIIYMGFPKILIESRPRGIEELQMNLQKEFHSVNRKLNIAITRIEKPYGNPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRIDGKEIARVEWIREGRVPLQTIRAKIDYCCYTVRTIYGVLGIKIWIFID 216          
BLAST of CX069677 vs. ExPASy Swiss-Prot
Match: RR3_NANDO (30S ribosomal protein S3, chloroplastic OS=Nandina domestica GN=rps3 PE=3 SV=1)

HSP 1 Score: 342.813 bits (878), Expect = 1.360e-93
Identity = 170/199 (85.43%), Postives = 184/199 (92.46%), Query Frame = 3
Query:    3 SLWFAKPKNYCEGLQEDQKIRNFIKNYIKKNIRISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNVQKELNCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDEK 599
            SLWFA+PKNY EGLQEDQKI++ I+NY++KN+RISSGVEGIARIEIQKRIDLIQVIIY+GFPKLL+E R R IEELQ +VQK  N VNRK+NIAITRI  PYGHPNILAEFIAGQLKNRVSFRKA+KKAIELTEQADTKGIQVQIAGR+DGKEIAR EWIREGRVPLQTI AKIDYCSYTVRTIYG LGIKIWIF DE+
Sbjct:   20 SLWFAQPKNYSEGLQEDQKIQDCIRNYVQKNMRISSGVEGIARIEIQKRIDLIQVIIYMGFPKLLIEGRSRGIEELQSSVQKRFNSVNRKLNIAITRIAKPYGHPNILAEFIAGQLKNRVSFRKAIKKAIELTEQADTKGIQVQIAGRIDGKEIARVEWIREGRVPLQTIRAKIDYCSYTVRTIYGALGIKIWIFTDEE 218          
BLAST of CX069677 vs. ExPASy Swiss-Prot
Match: RR3_MORIN (30S ribosomal protein S3, chloroplastic OS=Morus indica GN=rps3 PE=3 SV=1)

HSP 1 Score: 337.806 bits (865), Expect = 4.375e-92
Identity = 170/198 (85.86%), Postives = 184/198 (92.93%), Query Frame = 3
Query:    3 SLWFAKPKNYCEGLQEDQKIRNFIKNYIKKNIRISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNVQKELNCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDE 596
            SLWFA+PKNY E LQEDQKIR+ IKNYIKKN++I S VEGIA IEIQKRIDLIQVIIY+GFPKLL+E++  +IEELQMN+QKELN VNRK+N+AITRI NPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQA TKGIQ+QIAGR+DGKEIAR EWIREGRVPLQTI AKIDYCSYTVRTIYG LGIKIWIFVDE
Sbjct:   20 SLWFAQPKNYSEDLQEDQKIRDCIKNYIKKNMKIFSSVEGIACIEIQKRIDLIQVIIYMGFPKLLIEHQ--KIEELQMNIQKELNSVNRKLNMAITRIANPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQAGTKGIQIQIAGRIDGKEIARVEWIREGRVPLQTIKAKIDYCSYTVRTIYGALGIKIWIFVDE 215          
BLAST of CX069677 vs. ExPASy Swiss-Prot
Match: RR3_COFAR (30S ribosomal protein S3, chloroplastic OS=Coffea arabica GN=rps3 PE=3 SV=1)

HSP 1 Score: 335.109 bits (858), Expect = 2.836e-91
Identity = 166/199 (83.42%), Postives = 183/199 (91.96%), Query Frame = 3
Query:    3 SLWFAKPKNYCEGLQEDQKIRNFIKNYIKKNIRISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNVQKELNCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDEK 599
            SLWF + KNY EGLQEDQ+IRN IKNY++KN +ISSGVEGIARIEIQKRIDLIQVII++GFPK LLEN+PR IEELQ N+QK+ N VNRK NIAIT+I  PYG+PNILAE+IAGQLKNRVSFRKAMKKAIELTEQA+TKGIQVQIAGR+DGKEIAR EWIR GRVPLQTI AKIDYCSYTVRTIYGVLGIKIWIF+DE+
Sbjct:   20 SLWFTQAKNYSEGLQEDQQIRNCIKNYVQKNTKISSGVEGIARIEIQKRIDLIQVIIFMGFPKPLLENQPRGIEELQTNLQKKCNSVNRKFNIAITKIAKPYGNPNILAEYIAGQLKNRVSFRKAMKKAIELTEQANTKGIQVQIAGRIDGKEIARVEWIRRGRVPLQTIRAKIDYCSYTVRTIYGVLGIKIWIFIDEE 218          
BLAST of CX069677 vs. ExPASy Swiss-Prot
Match: RR3_IPOPU (30S ribosomal protein S3, chloroplastic OS=Ipomoea purpurea GN=rps3 PE=3 SV=1)

HSP 1 Score: 334.724 bits (857), Expect = 3.703e-91
Identity = 165/198 (83.33%), Postives = 181/198 (91.41%), Query Frame = 3
Query:    3 SLWFAKPKNYCEGLQEDQKIRNFIKNYIKKNIRISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNVQKELNCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDE 596
            SLWF++PKNY E LQEDQKIRNFIKNY++KN+  SSGV GIARI+IQK IDLI+VII++GFPKLL+ENRPR  EELQM +QKELNCVNRK+NIAITRI  PYG+P ILAEFIAGQLKNRVSFRKAMKKAIEL E+ADTKGIQVQIAGR+DGKEIAR EWIREGRVP QTI AKIDYCSY VRTIYGVLGIKIWIF+DE
Sbjct:   20 SLWFSQPKNYSESLQEDQKIRNFIKNYVQKNMITSSGVTGIARIDIQKGIDLIKVIIFMGFPKLLIENRPRATEELQMTLQKELNCVNRKLNIAITRIAKPYGNPKILAEFIAGQLKNRVSFRKAMKKAIELAEKADTKGIQVQIAGRIDGKEIARVEWIREGRVPRQTIRAKIDYCSYPVRTIYGVLGIKIWIFLDE 217          
BLAST of CX069677 vs. ExPASy Swiss-Prot
Match: RR3_CUCSA (30S ribosomal protein S3, chloroplastic OS=Cucumis sativus GN=rps3 PE=3 SV=1)

HSP 1 Score: 334.724 bits (857), Expect = 3.703e-91
Identity = 166/199 (83.42%), Postives = 183/199 (91.96%), Query Frame = 3
Query:    3 SLWFAKPKNYCEGLQEDQKIRNFIKNYIKKNIRISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNVQKELNCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDEK 599
            SLWFA PK Y EGLQEDQKIR+ I+NY++KN+RI SGVEGIARIEIQKRIDLIQVII++GFPKL++++  R+IEELQ+NVQKE N  NRK+NIAITRI NPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQA TKGIQVQIAGR+DGKEIAR EWIREGRVPLQTI AKIDYC Y VRTIYG+LGIKIWIFVDE+
Sbjct:   20 SLWFAHPKKYSEGLQEDQKIRDCIQNYVQKNMRIFSGVEGIARIEIQKRIDLIQVIIFMGFPKLVIDDGSRKIEELQINVQKEFNSGNRKLNIAITRIGNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQAGTKGIQVQIAGRIDGKEIARVEWIREGRVPLQTIRAKIDYCCYPVRTIYGILGIKIWIFVDEQ 218          
BLAST of CX069677 vs. ExPASy Swiss-Prot
Match: RR3_PLAOC (30S ribosomal protein S3, chloroplastic OS=Platanus occidentalis GN=rps3 PE=3 SV=1)

HSP 1 Score: 332.413 bits (851), Expect = 1.838e-90
Identity = 167/199 (83.92%), Postives = 184/199 (92.46%), Query Frame = 3
Query:    3 SLWFAKPKNYCEGLQEDQKIRNFIKNYIKKNIRISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNVQKELNCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDEK 599
            S+WFA+PK+Y EGLQEDQKIR+ IKNY++KN RI   VEGIARIEIQKRIDLIQVIIY+GFPKLL+E+RPR IEELQ+N+QKE N +NRK+NIAITRI  PYG PNILAE+IAGQLK+RVSFRKAMKKAIELTEQ DTKGIQVQIAGR+DGKEIAR EWIREGRVPLQTI AKIDYCSYTVRTIYGVLGIKIWIFVDE+
Sbjct:   20 SVWFAQPKSYSEGLQEDQKIRDCIKNYVQKNKRIPL-VEGIARIEIQKRIDLIQVIIYMGFPKLLIEDRPRGIEELQINLQKEFNSMNRKLNIAITRIAKPYGQPNILAEYIAGQLKSRVSFRKAMKKAIELTEQTDTKGIQVQIAGRIDGKEIARVEWIREGRVPLQTIRAKIDYCSYTVRTIYGVLGIKIWIFVDEE 217          
BLAST of CX069677 vs. ExPASy Swiss-Prot
Match: RR3_LOTJA (30S ribosomal protein S3, chloroplastic OS=Lotus japonicus GN=rps3 PE=3 SV=1)

HSP 1 Score: 325.865 bits (834), Expect = 1.720e-88
Identity = 160/199 (80.40%), Postives = 183/199 (91.96%), Query Frame = 3
Query:    3 SLWFAKPKNYCEGLQEDQKIRNFIKNYIKKNIRISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNVQKELNCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDEK 599
            S+WFA+P NY E L+ED+KIR+ IK YI+K I+ISSGVEGI RI+IQKRIDLIQVIIY+GFPKLL++ +PRRIEELQ+NVQK++N VNRK+NIAITRI N Y  PNILAEFIAGQLKNRVSFRKAMKKAIELTEQA TKG+QVQIAGR+DGKEIAR EWIREGRVPLQTI AKIDYCSYTVRTIYGVLGIK+WIF++++
Sbjct:   20 SIWFAQPTNYSENLKEDKKIRDCIKTYIQKTIKISSGVEGIGRIKIQKRIDLIQVIIYMGFPKLLIDGKPRRIEELQINVQKKMNYVNRKLNIAITRIANAYRDPNILAEFIAGQLKNRVSFRKAMKKAIELTEQAGTKGVQVQIAGRIDGKEIARVEWIREGRVPLQTIRAKIDYCSYTVRTIYGVLGIKVWIFLNKE 218          
BLAST of CX069677 vs. ExPASy Swiss-Prot
Match: RR3_SOYBN (30S ribosomal protein S3, chloroplastic OS=Glycine max GN=rps3 PE=3 SV=1)

HSP 1 Score: 325.094 bits (832), Expect = 2.934e-88
Identity = 157/195 (80.51%), Postives = 179/195 (91.79%), Query Frame = 3
Query:    3 SLWFAKPKNYCEGLQEDQKIRNFIKNYIKKNIRISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNVQKELNCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIF 587
            S+WFA+P NY E +QED+KIR+ IKNYI+KNIRISSGVEGI +I+IQKRIDLIQVIIY+GFPKLL+E + ++IEELQ N+QK+LNCVNRK+NIAI ++ N Y HPNI+AEFIAGQLKNRVSFRKAMKKAIELTEQA TKG+QVQIAGR+DGKEIAR EWIREGRVPLQTI AKIDYC YTVRTIYGVLGIK+WIF
Sbjct:   20 SIWFAQPTNYSENIQEDKKIRDCIKNYIQKNIRISSGVEGIGQIKIQKRIDLIQVIIYMGFPKLLIEGKSQKIEELQTNMQKKLNCVNRKLNIAIVKVANAYKHPNIIAEFIAGQLKNRVSFRKAMKKAIELTEQAGTKGVQVQIAGRIDGKEIARVEWIREGRVPLQTIRAKIDYCCYTVRTIYGVLGIKVWIF 214          
The following BLAST results are available for this feature:
BLAST of CX069677 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RR3_SPIOL1.041e-9383.9230S ribosomal protein S3, chloroplastic OS=Spinaci... [more]
RR3_LACSA1.041e-9384.7730S ribosomal protein S3, chloroplastic OS=Lactuca... [more]
RR3_NANDO1.360e-9385.4330S ribosomal protein S3, chloroplastic OS=Nandina... [more]
RR3_MORIN4.375e-9285.8630S ribosomal protein S3, chloroplastic OS=Morus i... [more]
RR3_COFAR2.836e-9183.4230S ribosomal protein S3, chloroplastic OS=Coffea ... [more]
RR3_IPOPU3.703e-9183.3330S ribosomal protein S3, chloroplastic OS=Ipomoea... [more]
RR3_CUCSA3.703e-9183.4230S ribosomal protein S3, chloroplastic OS=Cucumis... [more]
RR3_PLAOC1.838e-9083.9230S ribosomal protein S3, chloroplastic OS=Platanu... [more]
RR3_LOTJA1.720e-8880.4030S ribosomal protein S3, chloroplastic OS=Lotus j... [more]
RR3_SOYBN2.934e-8880.5130S ribosomal protein S3, chloroplastic OS=Glycine... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_12B02_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-12B02-D4-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069677 ID=CX069677; Name=CX069677; organism=Citrus sinensis; type=EST; length=821bp
ATTCTCTTTGGTTTGCAAAACCAAAAAACTATTGCGAGGGTCTACAAGAA
GATCAAAAAATACGAAACTTTATTAAGAATTATATAAAAAAAAATATCAG
AATATCTTCCGGTGTTGAGGGAATTGCACGGATAGAGATTCAAAAAAGAA
TTGATCTAATTCAAGTTATAATCTATATAGGGTTCCCAAAATTATTACTA
GAAAATAGACCGCGAAGAATTGAAGAATTACAGATGAATGTACAAAAAGA
ACTTAATTGTGTGAATCGAAAAATAAACATTGCTATTACACGAATTACAA
ATCCTTATGGACACCCCAATATTCTTGCCGAATTTATAGCCGGACAATTA
AAAAATAGAGTTTCTTTTCGAAAAGCAATGAAAAAAGCTATTGAATTAAC
GGAACAGGCCGATACAAAAGGAATTCAAGTACAAATTGCAGGGCGTCTTG
ACGGAAAAGAAATTGCGCGCGCCGAATGGATCAGAGAAGGTAGAGTTCCT
CTACAAACCATTGGAGCTAAAATTGATTATTGTTCCTATACGGTTCGAAC
TATCTACGGGGTATTGGGAATCAAAATTTGGATATTTGTAGACGAAAAAA
AATAAGAGTTTACGGGTCTTTAGAGCCCCCCCATTAATGGAAATAAACCA
AACAAAGAACGAGCTCTTTTTATCTTCAATCAAAACAAAAATGAGAAATT
CCGCAATTCTATAGGGTTGAATAAAAATTCGATTGATTTTTTTTTTTTTA
TATAATTGCTATGCTTAGTGTGCGACTCGTTGGTTTTTTTTAGGGCTAGG
ATTCCAAAAAATGGACCGTCC
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