CX069677

Overview
NameCX069677
Unique NameCX069677
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length821
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX069677 vs. ExPASy Swiss-Prot
Match: RR3_LIRTU (30S ribosomal protein S3, chloroplastic OS=Liriodendron tulipifera GN=rps3 PE=3 SV=1)

HSP 1 Score: 325.094 bits (832), Expect = 2.934e-88
Identity = 162/199 (81.41%), Postives = 181/199 (90.95%), Query Frame = 3
Query:    3 SLWFAKPKNYCEGLQEDQKIRNFIKNYIKKNIRISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNVQKELNCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDEK 599
            SLWFA+PK+Y  GLQED+KIR+ IKNY++KN+RISSG EGIA IEI+K+IDLIQVIIYIGFP LL+E R R IEELQ+NVQK  + VNR++NIAITR+  PYG PNILAE+IA QLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGR+DGKEIAR EWIREGRVPLQTI AKID+CSYTVRTIYGVLGIKIWIFVDE+
Sbjct:   21 SLWFAQPKSYSIGLQEDEKIRDCIKNYVQKNMRISSGFEGIAHIEIKKKIDLIQVIIYIGFPNLLIEGRTRGIEELQINVQKGFHSVNRRLNIAITRVAKPYGQPNILAEYIALQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRIDGKEIARVEWIREGRVPLQTIRAKIDHCSYTVRTIYGVLGIKIWIFVDEQ 219          
BLAST of CX069677 vs. ExPASy Swiss-Prot
Match: RR3_CERDE (30S ribosomal protein S3, chloroplastic OS=Ceratophyllum demersum GN=rps3 PE=3 SV=1)

HSP 1 Score: 325.094 bits (832), Expect = 2.934e-88
Identity = 161/198 (81.31%), Postives = 176/198 (88.89%), Query Frame = 3
Query:    3 SLWFAKPKNYCEGLQEDQKIRNFIKNYIKKNIRISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNVQKELNCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDE 596
            S WFA+PKNY +GLQED+KIR+ IKNY++K +RISSG EGIARI IQKRIDLIQVIIYIGFP LL+E R R IEELQ NVQKE N  NR++N+ ITR+  PYG PNILAE+IAGQLK RVSFRKAMKKAIELTEQADTKGIQVQIAGR+DGKEIAR EWIREGRVPLQTI AKID+CSY VRTIYGVLGIKIWIFVDE
Sbjct:   20 SFWFAQPKNYSDGLQEDEKIRDCIKNYVQKEMRISSGFEGIARIGIQKRIDLIQVIIYIGFPNLLIEGRTRGIEELQSNVQKEFNSGNRRLNVVITRVAKPYGQPNILAEYIAGQLKKRVSFRKAMKKAIELTEQADTKGIQVQIAGRIDGKEIARVEWIREGRVPLQTIRAKIDHCSYMVRTIYGVLGIKIWIFVDE 217          
BLAST of CX069677 vs. ExPASy Swiss-Prot
Match: RR3_RANMC (30S ribosomal protein S3, chloroplastic OS=Ranunculus macranthus GN=rps3 PE=3 SV=1)

HSP 1 Score: 323.168 bits (827), Expect = 1.115e-87
Identity = 161/199 (80.90%), Postives = 179/199 (89.95%), Query Frame = 3
Query:    3 SLWFAKPKNYCEGLQEDQKIRNFIKNYIKKNIRISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNVQKELNCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDEK 599
            S+WFA+PKNY  GLQED+KI++ IKNY++KN +ISSGVEGIARI+I+KRIDLIQVIIY+GFPK L E  P+ IEELQ N+QKE N VN+K+NIAITRI  PYG PNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQ+QIAGR+DGKEIAR EWIREGRVPLQTI AKIDYCSYTVRTIYG LGIKIWIF  E+
Sbjct:   20 SVWFAQPKNYSGGLQEDKKIKDCIKNYVQKNRKISSGVEGIARIKIKKRIDLIQVIIYMGFPKFL-EGNPQGIEELQSNIQKEFNSVNQKLNIAITRIAKPYGQPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQIQIAGRIDGKEIARVEWIREGRVPLQTIRAKIDYCSYTVRTIYGALGIKIWIFAGEE 217          
BLAST of CX069677 vs. ExPASy Swiss-Prot
Match: RR3_PHAAN (30S ribosomal protein S3, chloroplastic OS=Phaseolus angularis GN=rps3 PE=3 SV=1)

HSP 1 Score: 323.168 bits (827), Expect = 1.115e-87
Identity = 156/195 (80.00%), Postives = 178/195 (91.28%), Query Frame = 3
Query:    3 SLWFAKPKNYCEGLQEDQKIRNFIKNYIKKNIRISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNVQKELNCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIF 587
            S+WFA+P  Y E +QED+KIR++IKNYI+KN RISSGVEGI  I+IQKRIDLIQVIIY+GFPKLL+E +P++IEELQ N+ K+LNCVNRK+NIAI ++TN Y HPNILAEFIAGQLKNRVSFRKAMKKAIELTEQA TKG+QVQIAGR+DGKEIAR EWIREGRVPLQTI AKI+YC YTVRTIYGVLGIK+WIF
Sbjct:   20 SIWFAQPTKYSENIQEDKKIRDWIKNYIQKNRRISSGVEGIGEIKIQKRIDLIQVIIYMGFPKLLIEGKPQKIEELQTNMHKKLNCVNRKLNIAIVKVTNAYKHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQAGTKGVQVQIAGRIDGKEIARVEWIREGRVPLQTIRAKIEYCCYTVRTIYGVLGIKVWIF 214          
BLAST of CX069677 vs. ExPASy Swiss-Prot
Match: RR3_PHAVU (30S ribosomal protein S3, chloroplastic OS=Phaseolus vulgaris GN=rps3 PE=3 SV=1)

HSP 1 Score: 322.783 bits (826), Expect = 1.456e-87
Identity = 155/195 (79.49%), Postives = 177/195 (90.77%), Query Frame = 3
Query:    3 SLWFAKPKNYCEGLQEDQKIRNFIKNYIKKNIRISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNVQKELNCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIF 587
            S+WFA+P  Y E +QED+KIR++IKNYI+KNIRISSGVEGI  I+IQKRIDLIQVIIY+GFPKLL+E +P +IEE Q N+ K+LNCVN+K+NIAI +ITN Y HPNILAEFIAGQLKNRVSFRKAMKKAIELTEQA TKG+QVQIAGR+DGKEIAR EWIREGRVPLQTI AKI+YC YTVRTIYG+LGIK+WIF
Sbjct:   20 SIWFAQPTKYSENIQEDKKIRDWIKNYIQKNIRISSGVEGIGEIKIQKRIDLIQVIIYMGFPKLLIEGKPHKIEEFQTNMHKKLNCVNKKLNIAIVKITNAYKHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQAGTKGVQVQIAGRIDGKEIARVEWIREGRVPLQTIRAKIEYCCYTVRTIYGILGIKVWIF 214          
BLAST of CX069677 vs. ExPASy Swiss-Prot
Match: RR3_CALFG (30S ribosomal protein S3, chloroplastic OS=Calycanthus floridus var. glaucus GN=rps3 PE=3 SV=1)

HSP 1 Score: 319.316 bits (817), Expect = 1.610e-86
Identity = 158/199 (79.40%), Postives = 176/199 (88.44%), Query Frame = 3
Query:    3 SLWFAKPKNYCEGLQEDQKIRNFIKNYIKKNIRISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNVQKELNCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDEK 599
            SLWFA+PK+YC GLQED+KIR+ IK Y++KN+RISSG EGIA IEIQK++DLIQVII IGFP  L+E   R IEELQMNVQK  +  NR++NIAITR+  PYG PNILAE+IA QLKNRVSFRKAMKK IELTEQADTKGIQVQIAGR+DGKEIAR EWIREGRVPLQTI AKID+CSYTVRTIYGVLGIKIWIFVDE+
Sbjct:   20 SLWFAQPKSYCRGLQEDEKIRDCIKIYVQKNMRISSGFEGIAHIEIQKKMDLIQVIISIGFPNFLIEGGTRGIEELQMNVQKRFHSANRRLNIAITRVAKPYGQPNILAEYIARQLKNRVSFRKAMKKVIELTEQADTKGIQVQIAGRIDGKEIARVEWIREGRVPLQTIRAKIDHCSYTVRTIYGVLGIKIWIFVDEQ 218          
BLAST of CX069677 vs. ExPASy Swiss-Prot
Match: RR3_ILLOL (30S ribosomal protein S3, chloroplastic OS=Illicium oligandrum GN=rps3 PE=3 SV=1)

HSP 1 Score: 316.62 bits (810), Expect = 1.044e-85
Identity = 156/198 (78.79%), Postives = 179/198 (90.40%), Query Frame = 3
Query:    6 LWFAKPKNYCEGLQEDQKIRNFIKNYIKKNIRISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNVQKELNCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDEK 599
            LWFA+PKNY  GLQED+KIR+ IKNY++K++R+SSG EGIARI IQK+IDLIQVII+IGFP  L+E R R IEELQ+NVQK+LN VNR++NIAITR+  PYG P ILAE+IA QLKNRVSFRKAMKKAIELTEQADTKGIQVQI+GR++GKEIAR EWIREGRVPLQTI AKID+CSY VRTIYGVLGIKIWIF+DE+
Sbjct:   21 LWFAQPKNYSGGLQEDEKIRDCIKNYVQKHMRVSSGFEGIARIGIQKKIDLIQVIIHIGFPHFLIEGRARGIEELQINVQKKLNSVNRRLNIAITRVAKPYGQPTILAEYIALQLKNRVSFRKAMKKAIELTEQADTKGIQVQISGRINGKEIARVEWIREGRVPLQTIRAKIDHCSYAVRTIYGVLGIKIWIFLDEE 218          
BLAST of CX069677 vs. ExPASy Swiss-Prot
Match: RR3_PHAAO (30S ribosomal protein S3, chloroplastic OS=Phalaenopsis aphrodite subsp. formosana GN=rps3 PE=3 SV=1)

HSP 1 Score: 315.079 bits (806), Expect = 3.037e-85
Identity = 157/199 (78.89%), Postives = 176/199 (88.44%), Query Frame = 3
Query:    3 SLWFAKPKNYCEGLQEDQKIRNFIKNYIKKNIRISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNVQKELNCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDEK 599
            S WFAKPKN+  GLQED++IRN IK+Y+KKN +ISSG EGIA I IQKRID IQVIIYIGFP LL+E R R +EELQMNVQKE + VNR++NIAITRI  PYG PNILAE+IA QLKNRVSFRKAMKKAIELTEQ  TKGIQVQIAGR+DGKEIAR EWIREGRVPLQTI AKID+CS+TVRTIYG+LGIKIWIFV+++
Sbjct:   20 SFWFAKPKNFSIGLQEDERIRNCIKDYVKKNKKISSGFEGIAYIGIQKRIDFIQVIIYIGFPNLLIEGRTRGVEELQMNVQKEFHSVNRRLNIAITRIEKPYGQPNILAEYIALQLKNRVSFRKAMKKAIELTEQTGTKGIQVQIAGRIDGKEIARVEWIREGRVPLQTIRAKIDHCSHTVRTIYGILGIKIWIFVNQE 218          
BLAST of CX069677 vs. ExPASy Swiss-Prot
Match: RR3_DRIGR (30S ribosomal protein S3, chloroplastic OS=Drimys granadensis GN=rps3 PE=3 SV=1)

HSP 1 Score: 314.694 bits (805), Expect = 3.966e-85
Identity = 158/199 (79.40%), Postives = 178/199 (89.45%), Query Frame = 3
Query:    3 SLWFAKPKNYCEGLQEDQKIRNFIKNYIKKNIRISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNVQKELNCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDEK 599
            SLWFA+PK+Y  GLQED+KIR+ IKNY++KN+R  SG EGI+ IEI+K+IDLIQVIIYIGFP LL+E R R IEEL++NVQK    VNR++NIAITR+  PYG PNILAE+IA QLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGR+DGKEIAR EWIREGRVPLQTI AKID+CSYTVRTIYGVLGIKIWIFVDE+
Sbjct:   20 SLWFAQPKSYSRGLQEDEKIRDCIKNYVQKNMR--SGSEGISHIEIKKKIDLIQVIIYIGFPNLLIEGRTRGIEELRINVQKGFRSVNRRLNIAITRVAKPYGQPNILAEYIALQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRIDGKEIARVEWIREGRVPLQTIRAKIDHCSYTVRTIYGVLGIKIWIFVDEQ 216          
BLAST of CX069677 vs. ExPASy Swiss-Prot
Match: RR3_ACOCL (30S ribosomal protein S3, chloroplastic OS=Acorus calamus GN=rps3 PE=3 SV=1)

HSP 1 Score: 313.923 bits (803), Expect = 6.765e-85
Identity = 156/199 (78.39%), Postives = 178/199 (89.45%), Query Frame = 3
Query:    3 SLWFAKPKNYCEGLQEDQKIRNFIKNYIKKNIRISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNVQKELNCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDEK 599
            SLWFA+PK+Y  GLQED+KIR  IKNY++KN R+SSG EGIARIEI+KRIDLIQVIIYIGFP L +E R + I+ELQM+VQK LN VN+++NIAI RI+ PYG PNILAE+IA QLKNRVSFRKAMKKAIELTEQADTKGIQ+QIAGR+DGKEIAR EWIREGRVPLQTI AKID+C + V+TIYGVLGIKIWIFVDE+
Sbjct:   20 SLWFAQPKSYSMGLQEDEKIRECIKNYVQKNPRLSSGFEGIARIEIKKRIDLIQVIIYIGFPNLFIEGRTQGIKELQMSVQKRLNSVNQRLNIAIARISKPYGQPNILAEYIALQLKNRVSFRKAMKKAIELTEQADTKGIQIQIAGRIDGKEIARVEWIREGRVPLQTIRAKIDHCFHKVQTIYGVLGIKIWIFVDEE 218          
The following BLAST results are available for this feature:
BLAST of CX069677 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RR3_LIRTU2.934e-8881.4130S ribosomal protein S3, chloroplastic OS=Liriode... [more]
RR3_CERDE2.934e-8881.3130S ribosomal protein S3, chloroplastic OS=Ceratop... [more]
RR3_RANMC1.115e-8780.9030S ribosomal protein S3, chloroplastic OS=Ranuncu... [more]
RR3_PHAAN1.115e-8780.0030S ribosomal protein S3, chloroplastic OS=Phaseol... [more]
RR3_PHAVU1.456e-8779.4930S ribosomal protein S3, chloroplastic OS=Phaseol... [more]
RR3_CALFG1.610e-8679.4030S ribosomal protein S3, chloroplastic OS=Calycan... [more]
RR3_ILLOL1.044e-8578.7930S ribosomal protein S3, chloroplastic OS=Illiciu... [more]
RR3_PHAAO3.037e-8578.8930S ribosomal protein S3, chloroplastic OS=Phalaen... [more]
RR3_DRIGR3.966e-8579.4030S ribosomal protein S3, chloroplastic OS=Drimys ... [more]
RR3_ACOCL6.765e-8578.3930S ribosomal protein S3, chloroplastic OS=Acorus ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_12B02_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-12B02-D4-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069677 ID=CX069677; Name=CX069677; organism=Citrus sinensis; type=EST; length=821bp
ATTCTCTTTGGTTTGCAAAACCAAAAAACTATTGCGAGGGTCTACAAGAA
GATCAAAAAATACGAAACTTTATTAAGAATTATATAAAAAAAAATATCAG
AATATCTTCCGGTGTTGAGGGAATTGCACGGATAGAGATTCAAAAAAGAA
TTGATCTAATTCAAGTTATAATCTATATAGGGTTCCCAAAATTATTACTA
GAAAATAGACCGCGAAGAATTGAAGAATTACAGATGAATGTACAAAAAGA
ACTTAATTGTGTGAATCGAAAAATAAACATTGCTATTACACGAATTACAA
ATCCTTATGGACACCCCAATATTCTTGCCGAATTTATAGCCGGACAATTA
AAAAATAGAGTTTCTTTTCGAAAAGCAATGAAAAAAGCTATTGAATTAAC
GGAACAGGCCGATACAAAAGGAATTCAAGTACAAATTGCAGGGCGTCTTG
ACGGAAAAGAAATTGCGCGCGCCGAATGGATCAGAGAAGGTAGAGTTCCT
CTACAAACCATTGGAGCTAAAATTGATTATTGTTCCTATACGGTTCGAAC
TATCTACGGGGTATTGGGAATCAAAATTTGGATATTTGTAGACGAAAAAA
AATAAGAGTTTACGGGTCTTTAGAGCCCCCCCATTAATGGAAATAAACCA
AACAAAGAACGAGCTCTTTTTATCTTCAATCAAAACAAAAATGAGAAATT
CCGCAATTCTATAGGGTTGAATAAAAATTCGATTGATTTTTTTTTTTTTA
TATAATTGCTATGCTTAGTGTGCGACTCGTTGGTTTTTTTTAGGGCTAGG
ATTCCAAAAAATGGACCGTCC
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