CX069677
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX069677 vs. ExPASy Swiss-Prot
Match: RR3_LIRTU (30S ribosomal protein S3, chloroplastic OS=Liriodendron tulipifera GN=rps3 PE=3 SV=1) HSP 1 Score: 325.094 bits (832), Expect = 2.934e-88 Identity = 162/199 (81.41%), Postives = 181/199 (90.95%), Query Frame = 3 Query: 3 SLWFAKPKNYCEGLQEDQKIRNFIKNYIKKNIRISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNVQKELNCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDEK 599 SLWFA+PK+Y GLQED+KIR+ IKNY++KN+RISSG EGIA IEI+K+IDLIQVIIYIGFP LL+E R R IEELQ+NVQK + VNR++NIAITR+ PYG PNILAE+IA QLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGR+DGKEIAR EWIREGRVPLQTI AKID+CSYTVRTIYGVLGIKIWIFVDE+ Sbjct: 21 SLWFAQPKSYSIGLQEDEKIRDCIKNYVQKNMRISSGFEGIAHIEIKKKIDLIQVIIYIGFPNLLIEGRTRGIEELQINVQKGFHSVNRRLNIAITRVAKPYGQPNILAEYIALQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRIDGKEIARVEWIREGRVPLQTIRAKIDHCSYTVRTIYGVLGIKIWIFVDEQ 219
BLAST of CX069677 vs. ExPASy Swiss-Prot
Match: RR3_CERDE (30S ribosomal protein S3, chloroplastic OS=Ceratophyllum demersum GN=rps3 PE=3 SV=1) HSP 1 Score: 325.094 bits (832), Expect = 2.934e-88 Identity = 161/198 (81.31%), Postives = 176/198 (88.89%), Query Frame = 3 Query: 3 SLWFAKPKNYCEGLQEDQKIRNFIKNYIKKNIRISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNVQKELNCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDE 596 S WFA+PKNY +GLQED+KIR+ IKNY++K +RISSG EGIARI IQKRIDLIQVIIYIGFP LL+E R R IEELQ NVQKE N NR++N+ ITR+ PYG PNILAE+IAGQLK RVSFRKAMKKAIELTEQADTKGIQVQIAGR+DGKEIAR EWIREGRVPLQTI AKID+CSY VRTIYGVLGIKIWIFVDE Sbjct: 20 SFWFAQPKNYSDGLQEDEKIRDCIKNYVQKEMRISSGFEGIARIGIQKRIDLIQVIIYIGFPNLLIEGRTRGIEELQSNVQKEFNSGNRRLNVVITRVAKPYGQPNILAEYIAGQLKKRVSFRKAMKKAIELTEQADTKGIQVQIAGRIDGKEIARVEWIREGRVPLQTIRAKIDHCSYMVRTIYGVLGIKIWIFVDE 217
BLAST of CX069677 vs. ExPASy Swiss-Prot
Match: RR3_RANMC (30S ribosomal protein S3, chloroplastic OS=Ranunculus macranthus GN=rps3 PE=3 SV=1) HSP 1 Score: 323.168 bits (827), Expect = 1.115e-87 Identity = 161/199 (80.90%), Postives = 179/199 (89.95%), Query Frame = 3 Query: 3 SLWFAKPKNYCEGLQEDQKIRNFIKNYIKKNIRISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNVQKELNCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDEK 599 S+WFA+PKNY GLQED+KI++ IKNY++KN +ISSGVEGIARI+I+KRIDLIQVIIY+GFPK L E P+ IEELQ N+QKE N VN+K+NIAITRI PYG PNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQ+QIAGR+DGKEIAR EWIREGRVPLQTI AKIDYCSYTVRTIYG LGIKIWIF E+ Sbjct: 20 SVWFAQPKNYSGGLQEDKKIKDCIKNYVQKNRKISSGVEGIARIKIKKRIDLIQVIIYMGFPKFL-EGNPQGIEELQSNIQKEFNSVNQKLNIAITRIAKPYGQPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQIQIAGRIDGKEIARVEWIREGRVPLQTIRAKIDYCSYTVRTIYGALGIKIWIFAGEE 217
BLAST of CX069677 vs. ExPASy Swiss-Prot
Match: RR3_PHAAN (30S ribosomal protein S3, chloroplastic OS=Phaseolus angularis GN=rps3 PE=3 SV=1) HSP 1 Score: 323.168 bits (827), Expect = 1.115e-87 Identity = 156/195 (80.00%), Postives = 178/195 (91.28%), Query Frame = 3 Query: 3 SLWFAKPKNYCEGLQEDQKIRNFIKNYIKKNIRISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNVQKELNCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIF 587 S+WFA+P Y E +QED+KIR++IKNYI+KN RISSGVEGI I+IQKRIDLIQVIIY+GFPKLL+E +P++IEELQ N+ K+LNCVNRK+NIAI ++TN Y HPNILAEFIAGQLKNRVSFRKAMKKAIELTEQA TKG+QVQIAGR+DGKEIAR EWIREGRVPLQTI AKI+YC YTVRTIYGVLGIK+WIF Sbjct: 20 SIWFAQPTKYSENIQEDKKIRDWIKNYIQKNRRISSGVEGIGEIKIQKRIDLIQVIIYMGFPKLLIEGKPQKIEELQTNMHKKLNCVNRKLNIAIVKVTNAYKHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQAGTKGVQVQIAGRIDGKEIARVEWIREGRVPLQTIRAKIEYCCYTVRTIYGVLGIKVWIF 214
BLAST of CX069677 vs. ExPASy Swiss-Prot
Match: RR3_PHAVU (30S ribosomal protein S3, chloroplastic OS=Phaseolus vulgaris GN=rps3 PE=3 SV=1) HSP 1 Score: 322.783 bits (826), Expect = 1.456e-87 Identity = 155/195 (79.49%), Postives = 177/195 (90.77%), Query Frame = 3 Query: 3 SLWFAKPKNYCEGLQEDQKIRNFIKNYIKKNIRISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNVQKELNCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIF 587 S+WFA+P Y E +QED+KIR++IKNYI+KNIRISSGVEGI I+IQKRIDLIQVIIY+GFPKLL+E +P +IEE Q N+ K+LNCVN+K+NIAI +ITN Y HPNILAEFIAGQLKNRVSFRKAMKKAIELTEQA TKG+QVQIAGR+DGKEIAR EWIREGRVPLQTI AKI+YC YTVRTIYG+LGIK+WIF Sbjct: 20 SIWFAQPTKYSENIQEDKKIRDWIKNYIQKNIRISSGVEGIGEIKIQKRIDLIQVIIYMGFPKLLIEGKPHKIEEFQTNMHKKLNCVNKKLNIAIVKITNAYKHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQAGTKGVQVQIAGRIDGKEIARVEWIREGRVPLQTIRAKIEYCCYTVRTIYGILGIKVWIF 214
BLAST of CX069677 vs. ExPASy Swiss-Prot
Match: RR3_CALFG (30S ribosomal protein S3, chloroplastic OS=Calycanthus floridus var. glaucus GN=rps3 PE=3 SV=1) HSP 1 Score: 319.316 bits (817), Expect = 1.610e-86 Identity = 158/199 (79.40%), Postives = 176/199 (88.44%), Query Frame = 3 Query: 3 SLWFAKPKNYCEGLQEDQKIRNFIKNYIKKNIRISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNVQKELNCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDEK 599 SLWFA+PK+YC GLQED+KIR+ IK Y++KN+RISSG EGIA IEIQK++DLIQVII IGFP L+E R IEELQMNVQK + NR++NIAITR+ PYG PNILAE+IA QLKNRVSFRKAMKK IELTEQADTKGIQVQIAGR+DGKEIAR EWIREGRVPLQTI AKID+CSYTVRTIYGVLGIKIWIFVDE+ Sbjct: 20 SLWFAQPKSYCRGLQEDEKIRDCIKIYVQKNMRISSGFEGIAHIEIQKKMDLIQVIISIGFPNFLIEGGTRGIEELQMNVQKRFHSANRRLNIAITRVAKPYGQPNILAEYIARQLKNRVSFRKAMKKVIELTEQADTKGIQVQIAGRIDGKEIARVEWIREGRVPLQTIRAKIDHCSYTVRTIYGVLGIKIWIFVDEQ 218
BLAST of CX069677 vs. ExPASy Swiss-Prot
Match: RR3_ILLOL (30S ribosomal protein S3, chloroplastic OS=Illicium oligandrum GN=rps3 PE=3 SV=1) HSP 1 Score: 316.62 bits (810), Expect = 1.044e-85 Identity = 156/198 (78.79%), Postives = 179/198 (90.40%), Query Frame = 3 Query: 6 LWFAKPKNYCEGLQEDQKIRNFIKNYIKKNIRISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNVQKELNCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDEK 599 LWFA+PKNY GLQED+KIR+ IKNY++K++R+SSG EGIARI IQK+IDLIQVII+IGFP L+E R R IEELQ+NVQK+LN VNR++NIAITR+ PYG P ILAE+IA QLKNRVSFRKAMKKAIELTEQADTKGIQVQI+GR++GKEIAR EWIREGRVPLQTI AKID+CSY VRTIYGVLGIKIWIF+DE+ Sbjct: 21 LWFAQPKNYSGGLQEDEKIRDCIKNYVQKHMRVSSGFEGIARIGIQKKIDLIQVIIHIGFPHFLIEGRARGIEELQINVQKKLNSVNRRLNIAITRVAKPYGQPTILAEYIALQLKNRVSFRKAMKKAIELTEQADTKGIQVQISGRINGKEIARVEWIREGRVPLQTIRAKIDHCSYAVRTIYGVLGIKIWIFLDEE 218
BLAST of CX069677 vs. ExPASy Swiss-Prot
Match: RR3_PHAAO (30S ribosomal protein S3, chloroplastic OS=Phalaenopsis aphrodite subsp. formosana GN=rps3 PE=3 SV=1) HSP 1 Score: 315.079 bits (806), Expect = 3.037e-85 Identity = 157/199 (78.89%), Postives = 176/199 (88.44%), Query Frame = 3 Query: 3 SLWFAKPKNYCEGLQEDQKIRNFIKNYIKKNIRISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNVQKELNCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDEK 599 S WFAKPKN+ GLQED++IRN IK+Y+KKN +ISSG EGIA I IQKRID IQVIIYIGFP LL+E R R +EELQMNVQKE + VNR++NIAITRI PYG PNILAE+IA QLKNRVSFRKAMKKAIELTEQ TKGIQVQIAGR+DGKEIAR EWIREGRVPLQTI AKID+CS+TVRTIYG+LGIKIWIFV+++ Sbjct: 20 SFWFAKPKNFSIGLQEDERIRNCIKDYVKKNKKISSGFEGIAYIGIQKRIDFIQVIIYIGFPNLLIEGRTRGVEELQMNVQKEFHSVNRRLNIAITRIEKPYGQPNILAEYIALQLKNRVSFRKAMKKAIELTEQTGTKGIQVQIAGRIDGKEIARVEWIREGRVPLQTIRAKIDHCSHTVRTIYGILGIKIWIFVNQE 218
BLAST of CX069677 vs. ExPASy Swiss-Prot
Match: RR3_DRIGR (30S ribosomal protein S3, chloroplastic OS=Drimys granadensis GN=rps3 PE=3 SV=1) HSP 1 Score: 314.694 bits (805), Expect = 3.966e-85 Identity = 158/199 (79.40%), Postives = 178/199 (89.45%), Query Frame = 3 Query: 3 SLWFAKPKNYCEGLQEDQKIRNFIKNYIKKNIRISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNVQKELNCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDEK 599 SLWFA+PK+Y GLQED+KIR+ IKNY++KN+R SG EGI+ IEI+K+IDLIQVIIYIGFP LL+E R R IEEL++NVQK VNR++NIAITR+ PYG PNILAE+IA QLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGR+DGKEIAR EWIREGRVPLQTI AKID+CSYTVRTIYGVLGIKIWIFVDE+ Sbjct: 20 SLWFAQPKSYSRGLQEDEKIRDCIKNYVQKNMR--SGSEGISHIEIKKKIDLIQVIIYIGFPNLLIEGRTRGIEELRINVQKGFRSVNRRLNIAITRVAKPYGQPNILAEYIALQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRIDGKEIARVEWIREGRVPLQTIRAKIDHCSYTVRTIYGVLGIKIWIFVDEQ 216
BLAST of CX069677 vs. ExPASy Swiss-Prot
Match: RR3_ACOCL (30S ribosomal protein S3, chloroplastic OS=Acorus calamus GN=rps3 PE=3 SV=1) HSP 1 Score: 313.923 bits (803), Expect = 6.765e-85 Identity = 156/199 (78.39%), Postives = 178/199 (89.45%), Query Frame = 3 Query: 3 SLWFAKPKNYCEGLQEDQKIRNFIKNYIKKNIRISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNVQKELNCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDEK 599 SLWFA+PK+Y GLQED+KIR IKNY++KN R+SSG EGIARIEI+KRIDLIQVIIYIGFP L +E R + I+ELQM+VQK LN VN+++NIAI RI+ PYG PNILAE+IA QLKNRVSFRKAMKKAIELTEQADTKGIQ+QIAGR+DGKEIAR EWIREGRVPLQTI AKID+C + V+TIYGVLGIKIWIFVDE+ Sbjct: 20 SLWFAQPKSYSMGLQEDEKIRECIKNYVQKNPRLSSGFEGIARIEIKKRIDLIQVIIYIGFPNLFIEGRTQGIKELQMSVQKRLNSVNQRLNIAIARISKPYGQPNILAEYIALQLKNRVSFRKAMKKAIELTEQADTKGIQIQIAGRIDGKEIARVEWIREGRVPLQTIRAKIDHCFHKVQTIYGVLGIKIWIFVDEE 218 The following BLAST results are available for this feature:
BLAST of CX069677 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CX069677 ID=CX069677; Name=CX069677; organism=Citrus sinensis; type=EST; length=821bpback to top |