CX069677

Overview
NameCX069677
Unique NameCX069677
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length821
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX069677 vs. ExPASy Swiss-Prot
Match: RS3_MYCSK (30S ribosomal protein S3 OS=Mycobacterium sp. (strain KMS) GN=rpsC PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 1.061e-29
Identity = 78/228 (34.21%), Postives = 136/228 (59.65%), Query Frame = 3
Query:   21 PKNYCEGLQEDQKIRNFI----KNYIKKNIRI----SSGVE--GIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNVQKELNCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELT-EQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDE---KK*EFTGL*SPPINGNKPNKER 662
            P  +  G+  D K R +     K+Y+K+++ I    ++G+E  GIA +EI++  D ++V I+   P +++  R    + ++ +++K      +++ + I  + NP     ++A+ +A QL NRV+FR+AM+KAI+    Q + KGI+VQ +GRL G E++R+E+ REGRVPL T+ A IDY  Y  +T +G +G+K+WI+  +    K E T   + P   ++P +ER
Sbjct:    7 PHGFRLGITTDWKSRWYADKQYKDYVKEDVAIRRLLATGLERAGIADVEIERTRDRVRVDIHTARPGIVIGRRGTEADRIRADLEK---LTKKQVQLNILEVKNPESVAQLVAQGVAEQLSNRVAFRRAMRKAIQSAMRQPNVKGIRVQCSGRLGGAEMSRSEFYREGRVPLHTLRADIDYGLYEAKTTFGRIGVKVWIYKGDIVGGKRELTA--AAPAGADRPRRER 229          
BLAST of CX069677 vs. ExPASy Swiss-Prot
Match: RS3_MYCSJ (30S ribosomal protein S3 OS=Mycobacterium sp. (strain JLS) GN=rpsC PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 1.061e-29
Identity = 78/228 (34.21%), Postives = 136/228 (59.65%), Query Frame = 3
Query:   21 PKNYCEGLQEDQKIRNFI----KNYIKKNIRI----SSGVE--GIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNVQKELNCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELT-EQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDE---KK*EFTGL*SPPINGNKPNKER 662
            P  +  G+  D K R +     K+Y+K+++ I    ++G+E  GIA +EI++  D ++V I+   P +++  R    + ++ +++K      +++ + I  + NP     ++A+ +A QL NRV+FR+AM+KAI+    Q + KGI+VQ +GRL G E++R+E+ REGRVPL T+ A IDY  Y  +T +G +G+K+WI+  +    K E T   + P   ++P +ER
Sbjct:    7 PHGFRLGITTDWKSRWYADKQYKDYVKEDVAIRRLLATGLERAGIADVEIERTRDRVRVDIHTARPGIVIGRRGTEADRIRADLEK---LTKKQVQLNILEVKNPESVAQLVAQGVAEQLSNRVAFRRAMRKAIQSAMRQPNVKGIRVQCSGRLGGAEMSRSEFYREGRVPLHTLRADIDYGLYEAKTTFGRIGVKVWIYKGDIVGGKRELTA--AAPAGADRPRRER 229          
BLAST of CX069677 vs. ExPASy Swiss-Prot
Match: RS3_MYCGI (30S ribosomal protein S3 OS=Mycobacterium gilvum (strain PYR-GCK) GN=rpsC PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 1.061e-29
Identity = 75/224 (33.48%), Postives = 130/224 (58.04%), Query Frame = 3
Query:    3 SLWFAKPKNYCEGLQEDQKIRNFIKNYIKKNIRISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNVQKELNCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELT-EQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDE---KK*EFTGL*SPPINGNKPNKER 662
            S W+A  K Y + ++ED  IR  +   +++         GIA +EI++  D ++V I+   P +++  R    + ++ +++K      +++ + I  + NP     ++A+ +A QL NRV+FR+AM+KAI+    Q + KGI+VQ +GRL G E++R+E+ REGRVPL T+ A IDY  Y  +T +G +G+K+WI+  +    K E     + P   ++P +ER
Sbjct:   20 SRWYAD-KQYADYIKEDVAIRKLLATGLER--------AGIADVEIERTRDRVRVDIHTARPGIVIGRRGTEADRIRADLEK---LTKKQVQLNILEVKNPESRAQLVAQGVAEQLSNRVAFRRAMRKAIQSAMRQPNVKGIRVQCSGRLGGAEMSRSEFYREGRVPLHTLRADIDYGLYEAKTTFGRIGVKVWIYKGDIVGGKRELAA--AAPAGADRPRRER 229          
BLAST of CX069677 vs. ExPASy Swiss-Prot
Match: RS3_MYCA1 (30S ribosomal protein S3 OS=Mycobacterium avium (strain 104) GN=rpsC PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 1.061e-29
Identity = 79/226 (34.96%), Postives = 131/226 (57.96%), Query Frame = 3
Query:    3 SLWFAKPKNYCEGLQEDQKIRNFIKNYIKKNIRISSGVE--GIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNVQKELNCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELT-EQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIF---VDEKK*EFTGL*SPPINGNKPNKER 662
            S W+A  K Y + ++ED  IR  +          S+G+E  GIA +EI++  D ++V I+   P +++  R    + ++ +++K      +++ + I  + NP     ++A+ +A QL NRV+FR+AM+KAI+    Q + KGI+VQ +GRL G E++R+E+ REGRVPL T+ A IDY  Y  +T +G +G+K+WI+   V   K E     + P    +P +ER
Sbjct:   20 SRWYAD-KQYADYVKEDVAIRRLL----------STGLERAGIADVEIERTRDRVRVDIHTARPGIVIGRRGTEADRIRADLEK---LTGKQVQLNILEVRNPESQAQLVAQGVAEQLSNRVAFRRAMRKAIQSAMRQPNVKGIRVQCSGRLGGAEMSRSEFYREGRVPLHTLRADIDYGLYEAKTTFGRIGVKVWIYKGDVVGGKRELAA--AAPAGAERPRRER 229          
BLAST of CX069677 vs. ExPASy Swiss-Prot
Match: RS3_FRATT (30S ribosomal protein S3 OS=Francisella tularensis subsp. tularensis GN=rpsC PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 1.061e-29
Identity = 67/198 (33.84%), Postives = 111/198 (56.06%), Query Frame = 3
Query:    3 SLWFAKPKNYCEGLQEDQKIRNFIKNYIKKNIRISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNVQKELNCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDE 596
            S W+A    Y   L ED K+R F+   +            +++I+I++     ++ I+     +++  +   +E+L+  V K +      + I I  +  P     ++AE +A QL+ RV FR+AMKKA++   ++  KGI++ ++GRL G EIAR+EW R+GRVPLQT  A +DY +    T YGV+G+K+WI+  E
Sbjct:   20 STWYADSSRYATKLNEDIKVREFLHKKL--------AAAAVSKIQIERPAQNAKITIHTARSGIVIGKKGEDVEKLRAEVHKLMGI---PVQINIEEVRKPEIDAKLVAESVAQQLEKRVMFRRAMKKAMQAAMKSGAKGIKIMVSGRLGGAEIARSEWARDGRVPLQTFRADVDYATAEALTTYGVIGVKVWIYKGE 206          
BLAST of CX069677 vs. ExPASy Swiss-Prot
Match: RS3_FRAT1 (30S ribosomal protein S3 OS=Francisella tularensis subsp. tularensis (strain FSC 198) GN=rpsC PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 1.061e-29
Identity = 67/198 (33.84%), Postives = 111/198 (56.06%), Query Frame = 3
Query:    3 SLWFAKPKNYCEGLQEDQKIRNFIKNYIKKNIRISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNVQKELNCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDE 596
            S W+A    Y   L ED K+R F+   +            +++I+I++     ++ I+     +++  +   +E+L+  V K +      + I I  +  P     ++AE +A QL+ RV FR+AMKKA++   ++  KGI++ ++GRL G EIAR+EW R+GRVPLQT  A +DY +    T YGV+G+K+WI+  E
Sbjct:   20 STWYADSSRYATKLNEDIKVREFLHKKL--------AAAAVSKIQIERPAQNAKITIHTARSGIVIGKKGEDVEKLRAEVHKLMGI---PVQINIEEVRKPEIDAKLVAESVAQQLEKRVMFRRAMKKAMQAAMKSGAKGIKIMVSGRLGGAEIARSEWARDGRVPLQTFRADVDYATAEALTTYGVIGVKVWIYKGE 206          
BLAST of CX069677 vs. ExPASy Swiss-Prot
Match: RS3_DESHY (30S ribosomal protein S3 OS=Desulfitobacterium hafniense (strain Y51) GN=rpsC PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 1.061e-29
Identity = 71/197 (36.04%), Postives = 115/197 (58.38%), Query Frame = 3
Query:    9 WFAKPKNYCEGLQEDQKIRNFIKNYIKKNIRISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNVQKELNCVNRK-INIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDE 596
            WFA  KNY E L ED K+R F+K  +++         G+ ++EI++  + ++V I+   P +++      +E    N++K+L  +  K + + I  +  P     ++AE +A QL+ RVSFR+AMK+ ++ T +   +GI++  +GRL G EIAR EW  EG+VPL T+ A IDY      T YG +G+K+WI+  E
Sbjct:   22 WFAD-KNYLELLHEDLKVRKFVKTKLQQ--------AGVPKVEIERAANRVKVSIHAAKPGIVIGRGGTEVE----NLRKQLEAMTGKQVAVNIVEVKKPELDAQLVAESVAQQLEKRVSFRRAMKQTVQRTMRQGGQGIKISCSGRLGGAEIARTEWYSEGKVPLHTLRADIDYGFAEANTTYGKIGVKVWIYKGE 205          
BLAST of CX069677 vs. ExPASy Swiss-Prot
Match: RS3_CHLTE (30S ribosomal protein S3 OS=Chlorobium tepidum GN=rpsC PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 1.061e-29
Identity = 70/198 (35.35%), Postives = 113/198 (57.07%), Query Frame = 3
Query:    3 SLWFAKPKNYCEGLQEDQKIRNFIKNYIKKNIRISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNVQKELNCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDE 596
            S W+       E +++DQ IRN++   +KK         GIA+I I++    I++ IY   P  ++ ++   I  L   + +      +++ I +  +  P     ++ E IA QL+NRVSFR+AMK AI+   +A  +G++++ AGRL G EIARAE  +EG++PL T+ A +DY S T  TI G +GIK+W++  E
Sbjct:   20 SRWYDDGPVIAEKIKQDQVIRNYVHARLKKE------KAGIAKIVIERTTKHIKINIYAARPGAIVGHKGEEINNLSQELTR---ITGKEVKIDVIEVIKPEIEAQLIGENIAYQLENRVSFRRAMKMAIQQAMRAGAEGVRIRCAGRLGGAEIARAEQYKEGKIPLHTLRANVDYASVTAHTIAGAIGIKVWVYKGE 208          
BLAST of CX069677 vs. ExPASy Swiss-Prot
Match: RS3_CAMC1 (30S ribosomal protein S3 OS=Campylobacter concisus (strain 13826) GN=rpsC PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 1.061e-29
Identity = 72/198 (36.36%), Postives = 112/198 (56.57%), Query Frame = 3
Query:    3 SLWFAKPKNYCEGLQEDQKIRNFIKNYIKKNIRISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNVQKELNCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDE 596
            S WF   ++  E + ED KIR F+K  +           GI++I I++    ++V +    P +++  + + +E L+  V K    + +++N+ I           + AE +A QL+ RV+FR+AMKK I+  +++  KGI++ +AGRL G E+AR EW  EGRVPL T+ AKIDY      T YG +GIK+WIF  E
Sbjct:   20 SRWFPTKQSLPENIGEDYKIRAFLKKKLY--------YAGISQILIERTAKKLRVTVVAARPGIIIGKKGQDVENLKNEVSK---LIGKEVNVNIKEERKAQASAQLAAENVAMQLEKRVAFRRAMKKVIQGAQKSGAKGIKISVAGRLGGAEMARTEWYLEGRVPLHTLRAKIDYGVAEAHTTYGNIGIKVWIFKGE 206          
BLAST of CX069677 vs. ExPASy Swiss-Prot
Match: RS3_AZOSB (30S ribosomal protein S3 OS=Azoarcus sp. (strain BH72) GN=rpsC PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 1.061e-29
Identity = 71/198 (35.86%), Postives = 118/198 (59.60%), Query Frame = 3
Query:    3 SLWFAKPKNYCEGLQEDQKIRNFIKNYIKKNIRISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNVQKELNCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDE 596
            S WFA  +++ + L ED K+R+    Y+KK +  +S    + R+ I++     +V ++   P +++  +   IE L+ ++QK    V   +++ I  +  P     ++A+ IA QL+ R+ FR+AMK+A++   +   +GI++  +GRL+G EIAR EW REGRVPL T+ A IDY     +T YGV+GIK+W+F  E
Sbjct:   20 SRWFASSRDFSKMLHEDLKVRD----YLKKRLAHAS----VGRVVIERPAKNARVTLFSARPGVVIGKKGEDIEALKRDLQK---IVGVPVHVNIEEVRKPEIDAKLIADSIAQQLEKRIMFRRAMKRAMQNAMRLGAQGIKIMSSGRLNGAEIARTEWYREGRVPLHTLRANIDYGVSEAQTTYGVIGIKVWVFKGE 206          
The following BLAST results are available for this feature:
BLAST of CX069677 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RS3_MYCSK1.061e-2934.2130S ribosomal protein S3 OS=Mycobacterium sp. (str... [more]
RS3_MYCSJ1.061e-2934.2130S ribosomal protein S3 OS=Mycobacterium sp. (str... [more]
RS3_MYCGI1.061e-2933.4830S ribosomal protein S3 OS=Mycobacterium gilvum (... [more]
RS3_MYCA11.061e-2934.9630S ribosomal protein S3 OS=Mycobacterium avium (s... [more]
RS3_FRATT1.061e-2933.8430S ribosomal protein S3 OS=Francisella tularensis... [more]
RS3_FRAT11.061e-2933.8430S ribosomal protein S3 OS=Francisella tularensis... [more]
RS3_DESHY1.061e-2936.0430S ribosomal protein S3 OS=Desulfitobacterium haf... [more]
RS3_CHLTE1.061e-2935.3530S ribosomal protein S3 OS=Chlorobium tepidum GN=... [more]
RS3_CAMC11.061e-2936.3630S ribosomal protein S3 OS=Campylobacter concisus... [more]
RS3_AZOSB1.061e-2935.8630S ribosomal protein S3 OS=Azoarcus sp. (strain B... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_12B02_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-12B02-D4-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069677 ID=CX069677; Name=CX069677; organism=Citrus sinensis; type=EST; length=821bp
ATTCTCTTTGGTTTGCAAAACCAAAAAACTATTGCGAGGGTCTACAAGAA
GATCAAAAAATACGAAACTTTATTAAGAATTATATAAAAAAAAATATCAG
AATATCTTCCGGTGTTGAGGGAATTGCACGGATAGAGATTCAAAAAAGAA
TTGATCTAATTCAAGTTATAATCTATATAGGGTTCCCAAAATTATTACTA
GAAAATAGACCGCGAAGAATTGAAGAATTACAGATGAATGTACAAAAAGA
ACTTAATTGTGTGAATCGAAAAATAAACATTGCTATTACACGAATTACAA
ATCCTTATGGACACCCCAATATTCTTGCCGAATTTATAGCCGGACAATTA
AAAAATAGAGTTTCTTTTCGAAAAGCAATGAAAAAAGCTATTGAATTAAC
GGAACAGGCCGATACAAAAGGAATTCAAGTACAAATTGCAGGGCGTCTTG
ACGGAAAAGAAATTGCGCGCGCCGAATGGATCAGAGAAGGTAGAGTTCCT
CTACAAACCATTGGAGCTAAAATTGATTATTGTTCCTATACGGTTCGAAC
TATCTACGGGGTATTGGGAATCAAAATTTGGATATTTGTAGACGAAAAAA
AATAAGAGTTTACGGGTCTTTAGAGCCCCCCCATTAATGGAAATAAACCA
AACAAAGAACGAGCTCTTTTTATCTTCAATCAAAACAAAAATGAGAAATT
CCGCAATTCTATAGGGTTGAATAAAAATTCGATTGATTTTTTTTTTTTTA
TATAATTGCTATGCTTAGTGTGCGACTCGTTGGTTTTTTTTAGGGCTAGG
ATTCCAAAAAATGGACCGTCC
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