CX069677
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX069677 vs. ExPASy Swiss-Prot
Match: RS3_MYCSK (30S ribosomal protein S3 OS=Mycobacterium sp. (strain KMS) GN=rpsC PE=3 SV=1) HSP 1 Score: 130.568 bits (327), Expect = 1.061e-29 Identity = 78/228 (34.21%), Postives = 136/228 (59.65%), Query Frame = 3 Query: 21 PKNYCEGLQEDQKIRNFI----KNYIKKNIRI----SSGVE--GIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNVQKELNCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELT-EQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDE---KK*EFTGL*SPPINGNKPNKER 662 P + G+ D K R + K+Y+K+++ I ++G+E GIA +EI++ D ++V I+ P +++ R + ++ +++K +++ + I + NP ++A+ +A QL NRV+FR+AM+KAI+ Q + KGI+VQ +GRL G E++R+E+ REGRVPL T+ A IDY Y +T +G +G+K+WI+ + K E T + P ++P +ER Sbjct: 7 PHGFRLGITTDWKSRWYADKQYKDYVKEDVAIRRLLATGLERAGIADVEIERTRDRVRVDIHTARPGIVIGRRGTEADRIRADLEK---LTKKQVQLNILEVKNPESVAQLVAQGVAEQLSNRVAFRRAMRKAIQSAMRQPNVKGIRVQCSGRLGGAEMSRSEFYREGRVPLHTLRADIDYGLYEAKTTFGRIGVKVWIYKGDIVGGKRELTA--AAPAGADRPRRER 229
BLAST of CX069677 vs. ExPASy Swiss-Prot
Match: RS3_MYCSJ (30S ribosomal protein S3 OS=Mycobacterium sp. (strain JLS) GN=rpsC PE=3 SV=1) HSP 1 Score: 130.568 bits (327), Expect = 1.061e-29 Identity = 78/228 (34.21%), Postives = 136/228 (59.65%), Query Frame = 3 Query: 21 PKNYCEGLQEDQKIRNFI----KNYIKKNIRI----SSGVE--GIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNVQKELNCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELT-EQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDE---KK*EFTGL*SPPINGNKPNKER 662 P + G+ D K R + K+Y+K+++ I ++G+E GIA +EI++ D ++V I+ P +++ R + ++ +++K +++ + I + NP ++A+ +A QL NRV+FR+AM+KAI+ Q + KGI+VQ +GRL G E++R+E+ REGRVPL T+ A IDY Y +T +G +G+K+WI+ + K E T + P ++P +ER Sbjct: 7 PHGFRLGITTDWKSRWYADKQYKDYVKEDVAIRRLLATGLERAGIADVEIERTRDRVRVDIHTARPGIVIGRRGTEADRIRADLEK---LTKKQVQLNILEVKNPESVAQLVAQGVAEQLSNRVAFRRAMRKAIQSAMRQPNVKGIRVQCSGRLGGAEMSRSEFYREGRVPLHTLRADIDYGLYEAKTTFGRIGVKVWIYKGDIVGGKRELTA--AAPAGADRPRRER 229
BLAST of CX069677 vs. ExPASy Swiss-Prot
Match: RS3_MYCGI (30S ribosomal protein S3 OS=Mycobacterium gilvum (strain PYR-GCK) GN=rpsC PE=3 SV=1) HSP 1 Score: 130.568 bits (327), Expect = 1.061e-29 Identity = 75/224 (33.48%), Postives = 130/224 (58.04%), Query Frame = 3 Query: 3 SLWFAKPKNYCEGLQEDQKIRNFIKNYIKKNIRISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNVQKELNCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELT-EQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDE---KK*EFTGL*SPPINGNKPNKER 662 S W+A K Y + ++ED IR + +++ GIA +EI++ D ++V I+ P +++ R + ++ +++K +++ + I + NP ++A+ +A QL NRV+FR+AM+KAI+ Q + KGI+VQ +GRL G E++R+E+ REGRVPL T+ A IDY Y +T +G +G+K+WI+ + K E + P ++P +ER Sbjct: 20 SRWYAD-KQYADYIKEDVAIRKLLATGLER--------AGIADVEIERTRDRVRVDIHTARPGIVIGRRGTEADRIRADLEK---LTKKQVQLNILEVKNPESRAQLVAQGVAEQLSNRVAFRRAMRKAIQSAMRQPNVKGIRVQCSGRLGGAEMSRSEFYREGRVPLHTLRADIDYGLYEAKTTFGRIGVKVWIYKGDIVGGKRELAA--AAPAGADRPRRER 229
BLAST of CX069677 vs. ExPASy Swiss-Prot
Match: RS3_MYCA1 (30S ribosomal protein S3 OS=Mycobacterium avium (strain 104) GN=rpsC PE=3 SV=1) HSP 1 Score: 130.568 bits (327), Expect = 1.061e-29 Identity = 79/226 (34.96%), Postives = 131/226 (57.96%), Query Frame = 3 Query: 3 SLWFAKPKNYCEGLQEDQKIRNFIKNYIKKNIRISSGVE--GIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNVQKELNCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELT-EQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIF---VDEKK*EFTGL*SPPINGNKPNKER 662 S W+A K Y + ++ED IR + S+G+E GIA +EI++ D ++V I+ P +++ R + ++ +++K +++ + I + NP ++A+ +A QL NRV+FR+AM+KAI+ Q + KGI+VQ +GRL G E++R+E+ REGRVPL T+ A IDY Y +T +G +G+K+WI+ V K E + P +P +ER Sbjct: 20 SRWYAD-KQYADYVKEDVAIRRLL----------STGLERAGIADVEIERTRDRVRVDIHTARPGIVIGRRGTEADRIRADLEK---LTGKQVQLNILEVRNPESQAQLVAQGVAEQLSNRVAFRRAMRKAIQSAMRQPNVKGIRVQCSGRLGGAEMSRSEFYREGRVPLHTLRADIDYGLYEAKTTFGRIGVKVWIYKGDVVGGKRELAA--AAPAGAERPRRER 229
BLAST of CX069677 vs. ExPASy Swiss-Prot
Match: RS3_FRATT (30S ribosomal protein S3 OS=Francisella tularensis subsp. tularensis GN=rpsC PE=3 SV=1) HSP 1 Score: 130.568 bits (327), Expect = 1.061e-29 Identity = 67/198 (33.84%), Postives = 111/198 (56.06%), Query Frame = 3 Query: 3 SLWFAKPKNYCEGLQEDQKIRNFIKNYIKKNIRISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNVQKELNCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDE 596 S W+A Y L ED K+R F+ + +++I+I++ ++ I+ +++ + +E+L+ V K + + I I + P ++AE +A QL+ RV FR+AMKKA++ ++ KGI++ ++GRL G EIAR+EW R+GRVPLQT A +DY + T YGV+G+K+WI+ E Sbjct: 20 STWYADSSRYATKLNEDIKVREFLHKKL--------AAAAVSKIQIERPAQNAKITIHTARSGIVIGKKGEDVEKLRAEVHKLMGI---PVQINIEEVRKPEIDAKLVAESVAQQLEKRVMFRRAMKKAMQAAMKSGAKGIKIMVSGRLGGAEIARSEWARDGRVPLQTFRADVDYATAEALTTYGVIGVKVWIYKGE 206
BLAST of CX069677 vs. ExPASy Swiss-Prot
Match: RS3_FRAT1 (30S ribosomal protein S3 OS=Francisella tularensis subsp. tularensis (strain FSC 198) GN=rpsC PE=3 SV=1) HSP 1 Score: 130.568 bits (327), Expect = 1.061e-29 Identity = 67/198 (33.84%), Postives = 111/198 (56.06%), Query Frame = 3 Query: 3 SLWFAKPKNYCEGLQEDQKIRNFIKNYIKKNIRISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNVQKELNCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDE 596 S W+A Y L ED K+R F+ + +++I+I++ ++ I+ +++ + +E+L+ V K + + I I + P ++AE +A QL+ RV FR+AMKKA++ ++ KGI++ ++GRL G EIAR+EW R+GRVPLQT A +DY + T YGV+G+K+WI+ E Sbjct: 20 STWYADSSRYATKLNEDIKVREFLHKKL--------AAAAVSKIQIERPAQNAKITIHTARSGIVIGKKGEDVEKLRAEVHKLMGI---PVQINIEEVRKPEIDAKLVAESVAQQLEKRVMFRRAMKKAMQAAMKSGAKGIKIMVSGRLGGAEIARSEWARDGRVPLQTFRADVDYATAEALTTYGVIGVKVWIYKGE 206
BLAST of CX069677 vs. ExPASy Swiss-Prot
Match: RS3_DESHY (30S ribosomal protein S3 OS=Desulfitobacterium hafniense (strain Y51) GN=rpsC PE=3 SV=1) HSP 1 Score: 130.568 bits (327), Expect = 1.061e-29 Identity = 71/197 (36.04%), Postives = 115/197 (58.38%), Query Frame = 3 Query: 9 WFAKPKNYCEGLQEDQKIRNFIKNYIKKNIRISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNVQKELNCVNRK-INIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDE 596 WFA KNY E L ED K+R F+K +++ G+ ++EI++ + ++V I+ P +++ +E N++K+L + K + + I + P ++AE +A QL+ RVSFR+AMK+ ++ T + +GI++ +GRL G EIAR EW EG+VPL T+ A IDY T YG +G+K+WI+ E Sbjct: 22 WFAD-KNYLELLHEDLKVRKFVKTKLQQ--------AGVPKVEIERAANRVKVSIHAAKPGIVIGRGGTEVE----NLRKQLEAMTGKQVAVNIVEVKKPELDAQLVAESVAQQLEKRVSFRRAMKQTVQRTMRQGGQGIKISCSGRLGGAEIARTEWYSEGKVPLHTLRADIDYGFAEANTTYGKIGVKVWIYKGE 205
BLAST of CX069677 vs. ExPASy Swiss-Prot
Match: RS3_CHLTE (30S ribosomal protein S3 OS=Chlorobium tepidum GN=rpsC PE=3 SV=1) HSP 1 Score: 130.568 bits (327), Expect = 1.061e-29 Identity = 70/198 (35.35%), Postives = 113/198 (57.07%), Query Frame = 3 Query: 3 SLWFAKPKNYCEGLQEDQKIRNFIKNYIKKNIRISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNVQKELNCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDE 596 S W+ E +++DQ IRN++ +KK GIA+I I++ I++ IY P ++ ++ I L + + +++ I + + P ++ E IA QL+NRVSFR+AMK AI+ +A +G++++ AGRL G EIARAE +EG++PL T+ A +DY S T TI G +GIK+W++ E Sbjct: 20 SRWYDDGPVIAEKIKQDQVIRNYVHARLKKE------KAGIAKIVIERTTKHIKINIYAARPGAIVGHKGEEINNLSQELTR---ITGKEVKIDVIEVIKPEIEAQLIGENIAYQLENRVSFRRAMKMAIQQAMRAGAEGVRIRCAGRLGGAEIARAEQYKEGKIPLHTLRANVDYASVTAHTIAGAIGIKVWVYKGE 208
BLAST of CX069677 vs. ExPASy Swiss-Prot
Match: RS3_CAMC1 (30S ribosomal protein S3 OS=Campylobacter concisus (strain 13826) GN=rpsC PE=3 SV=1) HSP 1 Score: 130.568 bits (327), Expect = 1.061e-29 Identity = 72/198 (36.36%), Postives = 112/198 (56.57%), Query Frame = 3 Query: 3 SLWFAKPKNYCEGLQEDQKIRNFIKNYIKKNIRISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNVQKELNCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDE 596 S WF ++ E + ED KIR F+K + GI++I I++ ++V + P +++ + + +E L+ V K + +++N+ I + AE +A QL+ RV+FR+AMKK I+ +++ KGI++ +AGRL G E+AR EW EGRVPL T+ AKIDY T YG +GIK+WIF E Sbjct: 20 SRWFPTKQSLPENIGEDYKIRAFLKKKLY--------YAGISQILIERTAKKLRVTVVAARPGIIIGKKGQDVENLKNEVSK---LIGKEVNVNIKEERKAQASAQLAAENVAMQLEKRVAFRRAMKKVIQGAQKSGAKGIKISVAGRLGGAEMARTEWYLEGRVPLHTLRAKIDYGVAEAHTTYGNIGIKVWIFKGE 206
BLAST of CX069677 vs. ExPASy Swiss-Prot
Match: RS3_AZOSB (30S ribosomal protein S3 OS=Azoarcus sp. (strain BH72) GN=rpsC PE=3 SV=1) HSP 1 Score: 130.568 bits (327), Expect = 1.061e-29 Identity = 71/198 (35.86%), Postives = 118/198 (59.60%), Query Frame = 3 Query: 3 SLWFAKPKNYCEGLQEDQKIRNFIKNYIKKNIRISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNVQKELNCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDE 596 S WFA +++ + L ED K+R+ Y+KK + +S + R+ I++ +V ++ P +++ + IE L+ ++QK V +++ I + P ++A+ IA QL+ R+ FR+AMK+A++ + +GI++ +GRL+G EIAR EW REGRVPL T+ A IDY +T YGV+GIK+W+F E Sbjct: 20 SRWFASSRDFSKMLHEDLKVRD----YLKKRLAHAS----VGRVVIERPAKNARVTLFSARPGVVIGKKGEDIEALKRDLQK---IVGVPVHVNIEEVRKPEIDAKLIADSIAQQLEKRIMFRRAMKRAMQNAMRLGAQGIKIMSSGRLNGAEIARTEWYREGRVPLHTLRANIDYGVSEAQTTYGVIGIKVWVFKGE 206 The following BLAST results are available for this feature:
BLAST of CX069677 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CX069677 ID=CX069677; Name=CX069677; organism=Citrus sinensis; type=EST; length=821bpback to top |