CX069677

Overview
NameCX069677
Unique NameCX069677
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length821
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX069677 vs. ExPASy Swiss-Prot
Match: RS3_MYCLB (30S ribosomal protein S3 OS=Mycobacterium leprae (strain Br4923) GN=rpsC PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.809e-29
Identity = 74/198 (37.37%), Postives = 123/198 (62.12%), Query Frame = 3
Query:    3 SLWFAKPKNYCEGLQEDQKIRNFIKNYIKKNIRISSGVE--GIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNVQKELNCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELT-EQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIF 587
            S W+A  K Y E ++ED  IR  +          S+G+E  GIA +EI++  D ++V I+   P +++  R    + ++ +++K L C  +++ + I  + NP     ++A+ +A QL NRV+FR+AM+KAI+    Q + KGI+VQ +GRL G E++R+E+ REGRVPL T+ A IDY  +  +T +G +G+K+WI+
Sbjct:   20 SRWYAD-KQYAEYVKEDVAIRRLL----------STGLERAGIADVEIERTRDRVRVDIHTARPGIVIGRRGTEADRIRADLEK-LTC--KQVQLNILEVKNPESQAQLVAQGVAEQLSNRVAFRRAMRKAIQSAMRQPNVKGIRVQCSGRLGGAEMSRSEFYREGRVPLHTLRADIDYGLHEAKTTFGRIGVKVWIY 203          
BLAST of CX069677 vs. ExPASy Swiss-Prot
Match: RS3_LEPCP (30S ribosomal protein S3 OS=Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) GN=rpsC PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.809e-29
Identity = 67/195 (34.36%), Postives = 112/195 (57.44%), Query Frame = 3
Query:    3 SLWFAKPKNYCEGLQEDQKIRNFIKNYIKKNIRISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNVQKELNCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIF 587
            S W+A  +N+   L ED ++R F+K  +K           ++R+ I++     ++ IY   P +++  +   IE L++ + K L      + + I  +  P     ++AE I  QL+ R+ FR+AMK+A++   +   +GI++  AGRL+G EIAR EW REGRVPL T+ A IDY +   +T YGV+G+K+W++
Sbjct:   20 SRWYANNRNFAGMLAEDIEVREFLKKKLKN--------AAVSRVTIERPAKNARITIYSARPGVVIGKKGEDIENLKLELAKMLKV---PVAVNIEEVRKPEVDAQLIAESITQQLEKRIMFRRAMKRAMQNAMRLGAQGIKIMSAGRLNGIEIARTEWYREGRVPLHTLRADIDYGTAEAKTTYGVIGVKVWVY 203          
BLAST of CX069677 vs. ExPASy Swiss-Prot
Match: RS3_KINRD (30S ribosomal protein S3 OS=Kineococcus radiotolerans (strain ATCC BAA-149 / DSM 14245 / SRS30216) GN=rpsC PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.809e-29
Identity = 68/197 (34.52%), Postives = 120/197 (60.91%), Query Frame = 3
Query:    3 SLWFAKPKNYCEGLQEDQKIRNFIKNYIKKNIRISSGVE--GIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNVQKELNCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIF 587
            S WFA      +  +  Q+  +++K  +     +S G+E  GI+++EI++  D ++V I+   P +++  R    + ++  ++K      +++ + I  + NP     ++A+ +A QL +RVSFR+AM+K ++ T ++  KGI+VQ AGRL G E++R+E+ REGRVPL T+ A IDY  Y  RT +G +G+K+WI+
Sbjct:   20 SRWFA------DSTKTGQRYADYVKEDVAIRRLMSKGMERAGISKVEIERTRDRVRVDIHTARPGIVIGRRGAEADRIRTELEK---LTGKQVQLNILEVKNPEVDAQLVAQGVAEQLASRVSFRRAMRKGMQTTMRSGAKGIRVQCAGRLGGAEMSRSEFYREGRVPLHTLRANIDYGFYEARTTFGRIGVKVWIY 207          
BLAST of CX069677 vs. ExPASy Swiss-Prot
Match: RS3_THEFY (30S ribosomal protein S3 OS=Thermobifida fusca (strain YX) GN=rpsC PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 2.363e-29
Identity = 70/202 (34.65%), Postives = 126/202 (62.38%), Query Frame = 3
Query:   21 PKNYCEGLQEDQKIRNFI----KNYIKKNIRI----SSGVE--GIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNVQKELNCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDE 596
            P  +  G+  D K R F     K+Y+K+++ I    + G+E  GI+++EI++  + ++V ++   P +++  R    + ++ N++K     N+++ + I  + NP     ++A+ +A QL +RV+FR+AM+KAI+   ++  KGI+VQ +GRL G E++R+E+ REGRVPL T+ A IDY  +  RT +G +G+K+WI+  E
Sbjct:    7 PHGFRLGVTTDFKSRWFADKLYKDYVKEDVAIRQMLTRGMERAGISKVEIERTRERVRVDVHTARPGIVIGRRGAEADRIRANLEK---LTNKQVQLNILEVKNPEIDAQLVAQGVAEQLSSRVAFRRAMRKAIQSAMKSGAKGIRVQCSGRLGGAEMSRSEFYREGRVPLHTLRADIDYGFFEARTTFGRIGVKVWIYKGE 205          
BLAST of CX069677 vs. ExPASy Swiss-Prot
Match: RS3_SYNWW (30S ribosomal protein S3 OS=Syntrophomonas wolfei subsp. wolfei (strain Goettingen) GN=rpsC PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 2.363e-29
Identity = 75/194 (38.66%), Postives = 113/194 (58.25%), Query Frame = 3
Query:    3 SLWFAKPKNYCEGLQEDQKIRNFIKNYIKKNIRISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNVQKELNCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWI 584
            S W+A  ++Y E L ED K+R FIK+             GI+++EIQ+  + I+V I+   P +++      +E L++N+ +      + +NI I  I  P     I+AE +A QL+ R+SFR+AMK+ +  T ++   GI++ I+GRL G EIAR EW  EG+VPL T+ A IDY      T YG +GIK+WI
Sbjct:   20 SNWYAD-RDYSELLHEDVKLRKFIKDRFY--------AAGISKVEIQRTGNRIRVTIHTAKPGIIIGRGGIEVERLKVNLAE---MTKKNVNINIQEIRRPEMDAQIVAENVAQQLEKRISFRRAMKQTVGRTMRSGGIGIKIAISGRLGGAEIARTEWYAEGKVPLHTLRADIDYGFAEANTTYGKIGIKVWI 201          
BLAST of CX069677 vs. ExPASy Swiss-Prot
Match: RS3_RHILW (30S ribosomal protein S3 OS=Rhizobium leguminosarum bv. trifolii (strain WSM2304) GN=rpsC PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 2.363e-29
Identity = 72/198 (36.36%), Postives = 115/198 (58.08%), Query Frame = 3
Query:    3 SLWFAKPKNYCEGLQEDQKIRNFIKNYIKKNIRISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNVQKELNCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDE 596
            S WFA    Y + L ED K+R F+ + +K+         GI+++ I++     +V I+   P L++  +   I++L+   +K  +  N + ++ I  +  P     ++A+ IA QL+ RV+FR+AMK+A++   +   +GI++  AGRL G EIAR EW REGRVPL T+ A IDY +    T +G+ GIK+WIF  E
Sbjct:   20 SRWFADNAEYGQLLHEDLKMRKFVMSELKQ--------AGISKVVIERPHKKCRVTIHSARPGLIIGRKGADIDKLR---KKLSDMTNSETHLNIVEVRKPEVDATLVAQSIAQQLERRVAFRRAMKRAVQSAMRLGAEGIKITCAGRLGGAEIARTEWYREGRVPLHTLRADIDYGTAEAETAFGICGIKVWIFKGE 206          
BLAST of CX069677 vs. ExPASy Swiss-Prot
Match: RS3_RHIEC (30S ribosomal protein S3 OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=rpsC PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 2.363e-29
Identity = 72/198 (36.36%), Postives = 115/198 (58.08%), Query Frame = 3
Query:    3 SLWFAKPKNYCEGLQEDQKIRNFIKNYIKKNIRISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNVQKELNCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDE 596
            S WFA    Y + L ED K+R F+ + +K+         GI+++ I++     +V I+   P L++  +   I++L+   +K  +  N + ++ I  +  P     ++A+ IA QL+ RV+FR+AMK+A++   +   +GI++  AGRL G EIAR EW REGRVPL T+ A IDY +    T +G+ GIK+WIF  E
Sbjct:   20 SRWFADNAEYGQLLHEDLKMRKFVMSELKQ--------AGISKVVIERPHKKCRVTIHSARPGLIIGRKGADIDKLR---KKLSDMTNSETHLNIVEVRKPEVDATLVAQSIAQQLERRVAFRRAMKRAVQSAMRLGAEGIKITCAGRLGGAEIARTEWYREGRVPLHTLRADIDYGTAEAETAFGICGIKVWIFKGE 206          
BLAST of CX069677 vs. ExPASy Swiss-Prot
Match: RS3_RHIE6 (30S ribosomal protein S3 OS=Rhizobium etli (strain CIAT 652) GN=rpsC PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 2.363e-29
Identity = 72/198 (36.36%), Postives = 115/198 (58.08%), Query Frame = 3
Query:    3 SLWFAKPKNYCEGLQEDQKIRNFIKNYIKKNIRISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNVQKELNCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDE 596
            S WFA    Y + L ED K+R F+ + +K+         GI+++ I++     +V I+   P L++  +   I++L+   +K  +  N + ++ I  +  P     ++A+ IA QL+ RV+FR+AMK+A++   +   +GI++  AGRL G EIAR EW REGRVPL T+ A IDY +    T +G+ GIK+WIF  E
Sbjct:   20 SRWFADNAEYGQLLHEDLKMRKFVMSELKQ--------AGISKVVIERPHKKCRVTIHSARPGLIIGRKGADIDKLR---KKLSDMTNSETHLNIVEVRKPEVDATLVAQSIAQQLERRVAFRRAMKRAVQSAMRLGAEGIKITCAGRLGGAEIARTEWYREGRVPLHTLRADIDYGTAEAETAFGICGIKVWIFKGE 206          
BLAST of CX069677 vs. ExPASy Swiss-Prot
Match: RS3_DECAR (30S ribosomal protein S3 OS=Dechloromonas aromatica (strain RCB) GN=rpsC PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 2.363e-29
Identity = 69/195 (35.38%), Postives = 118/195 (60.51%), Query Frame = 3
Query:    3 SLWFAKPKNYCEGLQEDQKIRNFIKNYIKKNIRISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNVQKELNCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIF 587
            S W+A  K++   L ED K+R     Y+K+ +  +S    + R+ I++     +V +Y   P +++  +   IE+L+ ++Q+ +      ++++I  I  P     ++A+ IA QL+ R+ FR+AMK+A++   +   +GI+V  AGRL+G EIAR+EW REGRVPL T+ A IDY +    T YG++GIK+W++
Sbjct:   20 SRWYANSKDFPGMLNEDIKVRE----YLKRKLAHAS----VGRVLIERPAKNARVTVYSARPGVVIGKKGEDIEQLRTDLQRIMGV---PVHVSIEEIRKPEIDAQLIADSIAQQLEKRIMFRRAMKRAMQNAMRLGAQGIKVMSAGRLNGAEIARSEWYREGRVPLHTLRADIDYATSEALTTYGIIGIKVWVY 203          
BLAST of CX069677 vs. ExPASy Swiss-Prot
Match: RS3_CHLP8 (30S ribosomal protein S3 OS=Chlorobaculum parvum (strain NCIB 8327) GN=rpsC PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 2.363e-29
Identity = 69/198 (34.85%), Postives = 113/198 (57.07%), Query Frame = 3
Query:    3 SLWFAKPKNYCEGLQEDQKIRNFIKNYIKKNIRISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNVQKELNCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDE 596
            S W+       E +++DQ IRN+I   +KK         G++++ I++    I++ IY   P  ++  +   I  L   + +      R++ I +  +  P     ++ E IA QL+NRVSFR+AMK+AI+   +A  +GI+++ AGRL G EIAR+E  +EG++PL T+ A +DY S T  TI G +GIK+W++  E
Sbjct:   20 SRWYDDGPVIAEKIKQDQVIRNYISARLKKE------KAGVSKVVIERTTKHIKINIYAARPGAVVGRKGEEINNLSQELTR---ITGREVKIDVIEVIKPEIEAQLIGENIAYQLENRVSFRRAMKQAIQQAMRAGAEGIRIRCAGRLGGVEIARSEQYKEGKIPLHTLRANVDYASVTAHTIAGAIGIKVWVYKGE 208          
The following BLAST results are available for this feature:
BLAST of CX069677 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RS3_MYCLB1.809e-2937.3730S ribosomal protein S3 OS=Mycobacterium leprae (... [more]
RS3_LEPCP1.809e-2934.3630S ribosomal protein S3 OS=Leptothrix cholodnii (... [more]
RS3_KINRD1.809e-2934.5230S ribosomal protein S3 OS=Kineococcus radiotoler... [more]
RS3_THEFY2.363e-2934.6530S ribosomal protein S3 OS=Thermobifida fusca (st... [more]
RS3_SYNWW2.363e-2938.6630S ribosomal protein S3 OS=Syntrophomonas wolfei ... [more]
RS3_RHILW2.363e-2936.3630S ribosomal protein S3 OS=Rhizobium leguminosaru... [more]
RS3_RHIEC2.363e-2936.3630S ribosomal protein S3 OS=Rhizobium etli (strain... [more]
RS3_RHIE62.363e-2936.3630S ribosomal protein S3 OS=Rhizobium etli (strain... [more]
RS3_DECAR2.363e-2935.3830S ribosomal protein S3 OS=Dechloromonas aromatic... [more]
RS3_CHLP82.363e-2934.8530S ribosomal protein S3 OS=Chlorobaculum parvum (... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_12B02_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-12B02-D4-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069677 ID=CX069677; Name=CX069677; organism=Citrus sinensis; type=EST; length=821bp
ATTCTCTTTGGTTTGCAAAACCAAAAAACTATTGCGAGGGTCTACAAGAA
GATCAAAAAATACGAAACTTTATTAAGAATTATATAAAAAAAAATATCAG
AATATCTTCCGGTGTTGAGGGAATTGCACGGATAGAGATTCAAAAAAGAA
TTGATCTAATTCAAGTTATAATCTATATAGGGTTCCCAAAATTATTACTA
GAAAATAGACCGCGAAGAATTGAAGAATTACAGATGAATGTACAAAAAGA
ACTTAATTGTGTGAATCGAAAAATAAACATTGCTATTACACGAATTACAA
ATCCTTATGGACACCCCAATATTCTTGCCGAATTTATAGCCGGACAATTA
AAAAATAGAGTTTCTTTTCGAAAAGCAATGAAAAAAGCTATTGAATTAAC
GGAACAGGCCGATACAAAAGGAATTCAAGTACAAATTGCAGGGCGTCTTG
ACGGAAAAGAAATTGCGCGCGCCGAATGGATCAGAGAAGGTAGAGTTCCT
CTACAAACCATTGGAGCTAAAATTGATTATTGTTCCTATACGGTTCGAAC
TATCTACGGGGTATTGGGAATCAAAATTTGGATATTTGTAGACGAAAAAA
AATAAGAGTTTACGGGTCTTTAGAGCCCCCCCATTAATGGAAATAAACCA
AACAAAGAACGAGCTCTTTTTATCTTCAATCAAAACAAAAATGAGAAATT
CCGCAATTCTATAGGGTTGAATAAAAATTCGATTGATTTTTTTTTTTTTA
TATAATTGCTATGCTTAGTGTGCGACTCGTTGGTTTTTTTTAGGGCTAGG
ATTCCAAAAAATGGACCGTCC
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