CX069677
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX069677 vs. ExPASy Swiss-Prot
Match: RS3_MYCLB (30S ribosomal protein S3 OS=Mycobacterium leprae (strain Br4923) GN=rpsC PE=3 SV=1) HSP 1 Score: 129.798 bits (325), Expect = 1.809e-29 Identity = 74/198 (37.37%), Postives = 123/198 (62.12%), Query Frame = 3 Query: 3 SLWFAKPKNYCEGLQEDQKIRNFIKNYIKKNIRISSGVE--GIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNVQKELNCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELT-EQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIF 587 S W+A K Y E ++ED IR + S+G+E GIA +EI++ D ++V I+ P +++ R + ++ +++K L C +++ + I + NP ++A+ +A QL NRV+FR+AM+KAI+ Q + KGI+VQ +GRL G E++R+E+ REGRVPL T+ A IDY + +T +G +G+K+WI+ Sbjct: 20 SRWYAD-KQYAEYVKEDVAIRRLL----------STGLERAGIADVEIERTRDRVRVDIHTARPGIVIGRRGTEADRIRADLEK-LTC--KQVQLNILEVKNPESQAQLVAQGVAEQLSNRVAFRRAMRKAIQSAMRQPNVKGIRVQCSGRLGGAEMSRSEFYREGRVPLHTLRADIDYGLHEAKTTFGRIGVKVWIY 203
BLAST of CX069677 vs. ExPASy Swiss-Prot
Match: RS3_LEPCP (30S ribosomal protein S3 OS=Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) GN=rpsC PE=3 SV=1) HSP 1 Score: 129.798 bits (325), Expect = 1.809e-29 Identity = 67/195 (34.36%), Postives = 112/195 (57.44%), Query Frame = 3 Query: 3 SLWFAKPKNYCEGLQEDQKIRNFIKNYIKKNIRISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNVQKELNCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIF 587 S W+A +N+ L ED ++R F+K +K ++R+ I++ ++ IY P +++ + IE L++ + K L + + I + P ++AE I QL+ R+ FR+AMK+A++ + +GI++ AGRL+G EIAR EW REGRVPL T+ A IDY + +T YGV+G+K+W++ Sbjct: 20 SRWYANNRNFAGMLAEDIEVREFLKKKLKN--------AAVSRVTIERPAKNARITIYSARPGVVIGKKGEDIENLKLELAKMLKV---PVAVNIEEVRKPEVDAQLIAESITQQLEKRIMFRRAMKRAMQNAMRLGAQGIKIMSAGRLNGIEIARTEWYREGRVPLHTLRADIDYGTAEAKTTYGVIGVKVWVY 203
BLAST of CX069677 vs. ExPASy Swiss-Prot
Match: RS3_KINRD (30S ribosomal protein S3 OS=Kineococcus radiotolerans (strain ATCC BAA-149 / DSM 14245 / SRS30216) GN=rpsC PE=3 SV=1) HSP 1 Score: 129.798 bits (325), Expect = 1.809e-29 Identity = 68/197 (34.52%), Postives = 120/197 (60.91%), Query Frame = 3 Query: 3 SLWFAKPKNYCEGLQEDQKIRNFIKNYIKKNIRISSGVE--GIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNVQKELNCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIF 587 S WFA + + Q+ +++K + +S G+E GI+++EI++ D ++V I+ P +++ R + ++ ++K +++ + I + NP ++A+ +A QL +RVSFR+AM+K ++ T ++ KGI+VQ AGRL G E++R+E+ REGRVPL T+ A IDY Y RT +G +G+K+WI+ Sbjct: 20 SRWFA------DSTKTGQRYADYVKEDVAIRRLMSKGMERAGISKVEIERTRDRVRVDIHTARPGIVIGRRGAEADRIRTELEK---LTGKQVQLNILEVKNPEVDAQLVAQGVAEQLASRVSFRRAMRKGMQTTMRSGAKGIRVQCAGRLGGAEMSRSEFYREGRVPLHTLRANIDYGFYEARTTFGRIGVKVWIY 207
BLAST of CX069677 vs. ExPASy Swiss-Prot
Match: RS3_THEFY (30S ribosomal protein S3 OS=Thermobifida fusca (strain YX) GN=rpsC PE=3 SV=1) HSP 1 Score: 129.413 bits (324), Expect = 2.363e-29 Identity = 70/202 (34.65%), Postives = 126/202 (62.38%), Query Frame = 3 Query: 21 PKNYCEGLQEDQKIRNFI----KNYIKKNIRI----SSGVE--GIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNVQKELNCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDE 596 P + G+ D K R F K+Y+K+++ I + G+E GI+++EI++ + ++V ++ P +++ R + ++ N++K N+++ + I + NP ++A+ +A QL +RV+FR+AM+KAI+ ++ KGI+VQ +GRL G E++R+E+ REGRVPL T+ A IDY + RT +G +G+K+WI+ E Sbjct: 7 PHGFRLGVTTDFKSRWFADKLYKDYVKEDVAIRQMLTRGMERAGISKVEIERTRERVRVDVHTARPGIVIGRRGAEADRIRANLEK---LTNKQVQLNILEVKNPEIDAQLVAQGVAEQLSSRVAFRRAMRKAIQSAMKSGAKGIRVQCSGRLGGAEMSRSEFYREGRVPLHTLRADIDYGFFEARTTFGRIGVKVWIYKGE 205
BLAST of CX069677 vs. ExPASy Swiss-Prot
Match: RS3_SYNWW (30S ribosomal protein S3 OS=Syntrophomonas wolfei subsp. wolfei (strain Goettingen) GN=rpsC PE=3 SV=1) HSP 1 Score: 129.413 bits (324), Expect = 2.363e-29 Identity = 75/194 (38.66%), Postives = 113/194 (58.25%), Query Frame = 3 Query: 3 SLWFAKPKNYCEGLQEDQKIRNFIKNYIKKNIRISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNVQKELNCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWI 584 S W+A ++Y E L ED K+R FIK+ GI+++EIQ+ + I+V I+ P +++ +E L++N+ + + +NI I I P I+AE +A QL+ R+SFR+AMK+ + T ++ GI++ I+GRL G EIAR EW EG+VPL T+ A IDY T YG +GIK+WI Sbjct: 20 SNWYAD-RDYSELLHEDVKLRKFIKDRFY--------AAGISKVEIQRTGNRIRVTIHTAKPGIIIGRGGIEVERLKVNLAE---MTKKNVNINIQEIRRPEMDAQIVAENVAQQLEKRISFRRAMKQTVGRTMRSGGIGIKIAISGRLGGAEIARTEWYAEGKVPLHTLRADIDYGFAEANTTYGKIGIKVWI 201
BLAST of CX069677 vs. ExPASy Swiss-Prot
Match: RS3_RHILW (30S ribosomal protein S3 OS=Rhizobium leguminosarum bv. trifolii (strain WSM2304) GN=rpsC PE=3 SV=1) HSP 1 Score: 129.413 bits (324), Expect = 2.363e-29 Identity = 72/198 (36.36%), Postives = 115/198 (58.08%), Query Frame = 3 Query: 3 SLWFAKPKNYCEGLQEDQKIRNFIKNYIKKNIRISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNVQKELNCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDE 596 S WFA Y + L ED K+R F+ + +K+ GI+++ I++ +V I+ P L++ + I++L+ +K + N + ++ I + P ++A+ IA QL+ RV+FR+AMK+A++ + +GI++ AGRL G EIAR EW REGRVPL T+ A IDY + T +G+ GIK+WIF E Sbjct: 20 SRWFADNAEYGQLLHEDLKMRKFVMSELKQ--------AGISKVVIERPHKKCRVTIHSARPGLIIGRKGADIDKLR---KKLSDMTNSETHLNIVEVRKPEVDATLVAQSIAQQLERRVAFRRAMKRAVQSAMRLGAEGIKITCAGRLGGAEIARTEWYREGRVPLHTLRADIDYGTAEAETAFGICGIKVWIFKGE 206
BLAST of CX069677 vs. ExPASy Swiss-Prot
Match: RS3_RHIEC (30S ribosomal protein S3 OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=rpsC PE=3 SV=1) HSP 1 Score: 129.413 bits (324), Expect = 2.363e-29 Identity = 72/198 (36.36%), Postives = 115/198 (58.08%), Query Frame = 3 Query: 3 SLWFAKPKNYCEGLQEDQKIRNFIKNYIKKNIRISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNVQKELNCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDE 596 S WFA Y + L ED K+R F+ + +K+ GI+++ I++ +V I+ P L++ + I++L+ +K + N + ++ I + P ++A+ IA QL+ RV+FR+AMK+A++ + +GI++ AGRL G EIAR EW REGRVPL T+ A IDY + T +G+ GIK+WIF E Sbjct: 20 SRWFADNAEYGQLLHEDLKMRKFVMSELKQ--------AGISKVVIERPHKKCRVTIHSARPGLIIGRKGADIDKLR---KKLSDMTNSETHLNIVEVRKPEVDATLVAQSIAQQLERRVAFRRAMKRAVQSAMRLGAEGIKITCAGRLGGAEIARTEWYREGRVPLHTLRADIDYGTAEAETAFGICGIKVWIFKGE 206
BLAST of CX069677 vs. ExPASy Swiss-Prot
Match: RS3_RHIE6 (30S ribosomal protein S3 OS=Rhizobium etli (strain CIAT 652) GN=rpsC PE=3 SV=1) HSP 1 Score: 129.413 bits (324), Expect = 2.363e-29 Identity = 72/198 (36.36%), Postives = 115/198 (58.08%), Query Frame = 3 Query: 3 SLWFAKPKNYCEGLQEDQKIRNFIKNYIKKNIRISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNVQKELNCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDE 596 S WFA Y + L ED K+R F+ + +K+ GI+++ I++ +V I+ P L++ + I++L+ +K + N + ++ I + P ++A+ IA QL+ RV+FR+AMK+A++ + +GI++ AGRL G EIAR EW REGRVPL T+ A IDY + T +G+ GIK+WIF E Sbjct: 20 SRWFADNAEYGQLLHEDLKMRKFVMSELKQ--------AGISKVVIERPHKKCRVTIHSARPGLIIGRKGADIDKLR---KKLSDMTNSETHLNIVEVRKPEVDATLVAQSIAQQLERRVAFRRAMKRAVQSAMRLGAEGIKITCAGRLGGAEIARTEWYREGRVPLHTLRADIDYGTAEAETAFGICGIKVWIFKGE 206
BLAST of CX069677 vs. ExPASy Swiss-Prot
Match: RS3_DECAR (30S ribosomal protein S3 OS=Dechloromonas aromatica (strain RCB) GN=rpsC PE=3 SV=1) HSP 1 Score: 129.413 bits (324), Expect = 2.363e-29 Identity = 69/195 (35.38%), Postives = 118/195 (60.51%), Query Frame = 3 Query: 3 SLWFAKPKNYCEGLQEDQKIRNFIKNYIKKNIRISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNVQKELNCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIF 587 S W+A K++ L ED K+R Y+K+ + +S + R+ I++ +V +Y P +++ + IE+L+ ++Q+ + ++++I I P ++A+ IA QL+ R+ FR+AMK+A++ + +GI+V AGRL+G EIAR+EW REGRVPL T+ A IDY + T YG++GIK+W++ Sbjct: 20 SRWYANSKDFPGMLNEDIKVRE----YLKRKLAHAS----VGRVLIERPAKNARVTVYSARPGVVIGKKGEDIEQLRTDLQRIMGV---PVHVSIEEIRKPEIDAQLIADSIAQQLEKRIMFRRAMKRAMQNAMRLGAQGIKVMSAGRLNGAEIARSEWYREGRVPLHTLRADIDYATSEALTTYGIIGIKVWVY 203
BLAST of CX069677 vs. ExPASy Swiss-Prot
Match: RS3_CHLP8 (30S ribosomal protein S3 OS=Chlorobaculum parvum (strain NCIB 8327) GN=rpsC PE=3 SV=1) HSP 1 Score: 129.413 bits (324), Expect = 2.363e-29 Identity = 69/198 (34.85%), Postives = 113/198 (57.07%), Query Frame = 3 Query: 3 SLWFAKPKNYCEGLQEDQKIRNFIKNYIKKNIRISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNVQKELNCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDE 596 S W+ E +++DQ IRN+I +KK G++++ I++ I++ IY P ++ + I L + + R++ I + + P ++ E IA QL+NRVSFR+AMK+AI+ +A +GI+++ AGRL G EIAR+E +EG++PL T+ A +DY S T TI G +GIK+W++ E Sbjct: 20 SRWYDDGPVIAEKIKQDQVIRNYISARLKKE------KAGVSKVVIERTTKHIKINIYAARPGAVVGRKGEEINNLSQELTR---ITGREVKIDVIEVIKPEIEAQLIGENIAYQLENRVSFRRAMKQAIQQAMRAGAEGIRIRCAGRLGGVEIARSEQYKEGKIPLHTLRANVDYASVTAHTIAGAIGIKVWVYKGE 208 The following BLAST results are available for this feature:
BLAST of CX069677 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CX069677 ID=CX069677; Name=CX069677; organism=Citrus sinensis; type=EST; length=821bpback to top |