CX069677
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX069677 vs. ExPASy Swiss-Prot
Match: RS3_BURMA (30S ribosomal protein S3 OS=Burkholderia mallei GN=rpsC PE=3 SV=1) HSP 1 Score: 127.487 bits (319), Expect = 8.980e-29 Identity = 64/195 (32.82%), Postives = 111/195 (56.92%), Query Frame = 3 Query: 3 SLWFAKPKNYCEGLQEDQKIRNFIKNYIKKNIRISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNVQKELNCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIF 587 S W+A N+ LQED +R ++K +K + R+ I++ ++ I+ P +++ + IE L+ +Q+ + +++ I I P ++A+ I QL+ R+ FR+AMK+A++ + +GI++ AGRL+G EIAR EW REGRVPL T+ A IDY + +T YG++G+K+W++ Sbjct: 20 SRWYANNNNFAAMLQEDIGVREYLKKKLKN--------ASVGRVVIERPAKNARITIFSSRPGVVIGKKGEDIELLKTELQRRMGV---PVHVNIEEIRKPETDAQLIADSITQQLERRIMFRRAMKRAMQNAMRLGAQGIKIMSAGRLNGIEIARTEWYREGRVPLHTLRADIDYATSEAKTTYGIIGVKVWVY 203
BLAST of CX069677 vs. ExPASy Swiss-Prot
Match: RS3_BURM9 (30S ribosomal protein S3 OS=Burkholderia mallei (strain NCTC 10229) GN=rpsC PE=3 SV=1) HSP 1 Score: 127.487 bits (319), Expect = 8.980e-29 Identity = 64/195 (32.82%), Postives = 111/195 (56.92%), Query Frame = 3 Query: 3 SLWFAKPKNYCEGLQEDQKIRNFIKNYIKKNIRISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNVQKELNCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIF 587 S W+A N+ LQED +R ++K +K + R+ I++ ++ I+ P +++ + IE L+ +Q+ + +++ I I P ++A+ I QL+ R+ FR+AMK+A++ + +GI++ AGRL+G EIAR EW REGRVPL T+ A IDY + +T YG++G+K+W++ Sbjct: 20 SRWYANNNNFAAMLQEDIGVREYLKKKLKN--------ASVGRVVIERPAKNARITIFSSRPGVVIGKKGEDIELLKTELQRRMGV---PVHVNIEEIRKPETDAQLIADSITQQLERRIMFRRAMKRAMQNAMRLGAQGIKIMSAGRLNGIEIARTEWYREGRVPLHTLRADIDYATSEAKTTYGIIGVKVWVY 203
BLAST of CX069677 vs. ExPASy Swiss-Prot
Match: RS3_BURM7 (30S ribosomal protein S3 OS=Burkholderia mallei (strain NCTC 10247) GN=rpsC PE=3 SV=1) HSP 1 Score: 127.487 bits (319), Expect = 8.980e-29 Identity = 64/195 (32.82%), Postives = 111/195 (56.92%), Query Frame = 3 Query: 3 SLWFAKPKNYCEGLQEDQKIRNFIKNYIKKNIRISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNVQKELNCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIF 587 S W+A N+ LQED +R ++K +K + R+ I++ ++ I+ P +++ + IE L+ +Q+ + +++ I I P ++A+ I QL+ R+ FR+AMK+A++ + +GI++ AGRL+G EIAR EW REGRVPL T+ A IDY + +T YG++G+K+W++ Sbjct: 20 SRWYANNNNFAAMLQEDIGVREYLKKKLKN--------ASVGRVVIERPAKNARITIFSSRPGVVIGKKGEDIELLKTELQRRMGV---PVHVNIEEIRKPETDAQLIADSITQQLERRIMFRRAMKRAMQNAMRLGAQGIKIMSAGRLNGIEIARTEWYREGRVPLHTLRADIDYATSEAKTTYGIIGVKVWVY 203
BLAST of CX069677 vs. ExPASy Swiss-Prot
Match: RS3_BURM1 (30S ribosomal protein S3 OS=Burkholderia multivorans (strain ATCC 17616 / 249) GN=rpsC PE=3 SV=1) HSP 1 Score: 127.487 bits (319), Expect = 8.980e-29 Identity = 64/195 (32.82%), Postives = 111/195 (56.92%), Query Frame = 3 Query: 3 SLWFAKPKNYCEGLQEDQKIRNFIKNYIKKNIRISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNVQKELNCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIF 587 S W+A N+ LQED +R ++K +K + R+ I++ ++ I+ P +++ + IE L+ +Q+ + +++ I I P ++A+ I QL+ R+ FR+AMK+A++ + +GI++ AGRL+G EIAR EW REGRVPL T+ A IDY + +T YG++G+K+W++ Sbjct: 20 SRWYANNNNFAAMLQEDIGVREYLKKKLKN--------ASVGRVVIERPAKNARITIFSSRPGVVIGKKGEDIELLKTELQRRMGV---PVHVNIEEIRKPETDAQLIADSITQQLERRIMFRRAMKRAMQNAMRLGAQGIKIMSAGRLNGIEIARTEWYREGRVPLHTLRADIDYATSEAKTTYGIIGVKVWVY 203
BLAST of CX069677 vs. ExPASy Swiss-Prot
Match: RS3_BRUC2 (30S ribosomal protein S3 OS=Brucella canis (strain ATCC 23365 / NCTC 10854) GN=rpsC PE=3 SV=1) HSP 1 Score: 127.487 bits (319), Expect = 8.980e-29 Identity = 69/198 (34.85%), Postives = 112/198 (56.57%), Query Frame = 3 Query: 3 SLWFAKPKNYCEGLQEDQKIRNFIKNYIKKNIRISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNVQKELNCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDE 596 S W+A Y + L ED KIR F+ +K+ I++I I++ +V I+ P +++ + IE+L+ + + N ++ I + P ++A+ IA QL+ RV+FR+AMK+A++ + +GI++ +GRL G EIAR EW REGRVPL T+ A IDY + +T YG+ G+K+W+F E Sbjct: 20 SRWYANTGEYGKLLHEDVKIREFLTEELKQ--------AAISKIVIERPHKKCRVTIHSARPGIIIGKKGADIEKLRKKLSE---MTNADTSLNIVEVRKPEVDATLIAQLIAQQLERRVAFRRAMKRAVQSAMRLGAEGIRINCSGRLGGAEIARMEWYREGRVPLHTLRADIDYGTAEAKTAYGICGVKVWVFKGE 206
BLAST of CX069677 vs. ExPASy Swiss-Prot
Match: RS3_AZOSE (30S ribosomal protein S3 OS=Azoarcus sp. (strain EbN1) GN=rpsC PE=3 SV=1) HSP 1 Score: 127.487 bits (319), Expect = 8.980e-29 Identity = 67/198 (33.84%), Postives = 112/198 (56.57%), Query Frame = 3 Query: 3 SLWFAKPKNYCEGLQEDQKIRNFIKNYIKKNIRISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNVQKELNCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDE 596 S WFA +Y L ED K+R+F+K + + R+ I++ ++ ++ P +++ + IE L+ +QK + +++ I + P ++A+ IA QL+ R+ FR+AMK+A++ + +GI++ AGRL+G EIAR EW REGRVPL T+ A IDY +T YG++GIK+W++ E Sbjct: 20 SRWFASSGDYSRMLHEDLKVRDFLKKRLAH--------ASVGRVVIERPAKNARITLFSARPGVVIGKKGEDIELLKRELQKIMGV---PVHVNIEEVRKPEVDAKLIADSIAQQLEKRIMFRRAMKRAMQNAMRLGAQGIKIMSAGRLNGAEIARTEWYREGRVPLHTLRADIDYGVSEAKTTYGIIGIKVWVYKGE 206
BLAST of CX069677 vs. ExPASy Swiss-Prot
Match: RS3_STRAW (30S ribosomal protein S3 OS=Streptomyces avermitilis GN=rpsC PE=3 SV=1) HSP 1 Score: 127.102 bits (318), Expect = 1.173e-28 Identity = 67/204 (32.84%), Postives = 125/204 (61.27%), Query Frame = 3 Query: 21 PKNYCEGLQEDQKIR----NFIKNYIKKNIRI----SSGVE--GIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNVQKELNCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDEKK 602 P + G+ D K R K+Y+K+++ I +SG+E GI+++EI++ D ++V I+ P +++ R + ++ +++K +++ + I + NP ++A+ +A QL +RVSFR+AM+K+++ +A KGI++Q GRL G E++R+E+ REGRVPL T+ A +DY + +T +G +G+K+WI+ + K Sbjct: 7 PHGFRLGITTDFKSRWYADKLYKDYVKEDVAIRRMMTSGMERAGISKVEIERTRDRVRVDIHTARPGIVIGRRGAEADRIRGDLEK---LTGKQVQLNILEVKNPETDAQLVAQAVAEQLSSRVSFRRAMRKSMQSAMKAGAKGIKIQCGGRLGGAEMSRSEFYREGRVPLHTLRANVDYGFFEAKTTFGRIGVKVWIYKGDVK 207
BLAST of CX069677 vs. ExPASy Swiss-Prot
Match: RS3_NEIMF (30S ribosomal protein S3 OS=Neisseria meningitidis serogroup C / serotype 2a (strain ATCC 700532 / FAM18) GN=rpsC PE=3 SV=1) HSP 1 Score: 127.102 bits (318), Expect = 1.173e-28 Identity = 65/197 (32.99%), Postives = 115/197 (58.38%), Query Frame = 3 Query: 3 SLWFAKPKNYCEGLQEDQKIRNFIKNYIKKNIRISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNVQKELNCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVD 593 S WFAK ++ L++D +RN+++ + + R+ I++ ++ I+ P +++ + IE L+ ++Q + +++ I I P I+A+ IA QL+ RV FR+AMK+A++ ++ KGI++ +GRL+G +IAR+EW REGRVPL T+ A +DY + T YGVLG+K+W++ + Sbjct: 20 SKWFAKSTDFSTVLKQDIDVRNYLRQKLAN--------ASVGRVVIERPAKSARITIHSARPGVVIGKKGEDIEVLKRDLQVLMGV---PVHVNIEEIRRPELDAQIIADGIAQQLEKRVQFRRAMKRAMQNAMRSGAKGIKIMTSGRLNGADIARSEWYREGRVPLHTLRANVDYATSEAHTTYGVLGLKVWVYTE 205
BLAST of CX069677 vs. ExPASy Swiss-Prot
Match: RS3_NEIMB (30S ribosomal protein S3 OS=Neisseria meningitidis serogroup B GN=rpsC PE=3 SV=1) HSP 1 Score: 127.102 bits (318), Expect = 1.173e-28 Identity = 65/197 (32.99%), Postives = 115/197 (58.38%), Query Frame = 3 Query: 3 SLWFAKPKNYCEGLQEDQKIRNFIKNYIKKNIRISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNVQKELNCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVD 593 S WFAK ++ L++D +RN+++ + + R+ I++ ++ I+ P +++ + IE L+ ++Q + +++ I I P I+A+ IA QL+ RV FR+AMK+A++ ++ KGI++ +GRL+G +IAR+EW REGRVPL T+ A +DY + T YGVLG+K+W++ + Sbjct: 20 SKWFAKSTDFSTVLKQDIDVRNYLRQKLAN--------ASVGRVVIERPAKSARITIHSARPGVVIGKKGEDIEVLKRDLQVLMGV---PVHVNIEEIRRPELDAQIIADGIAQQLEKRVQFRRAMKRAMQNAMRSGAKGIKIMTSGRLNGADIARSEWYREGRVPLHTLRANVDYATSEAHTTYGVLGLKVWVYTE 205
BLAST of CX069677 vs. ExPASy Swiss-Prot
Match: RS3_NEIMA (30S ribosomal protein S3 OS=Neisseria meningitidis serogroup A GN=rpsC PE=3 SV=1) HSP 1 Score: 127.102 bits (318), Expect = 1.173e-28 Identity = 65/197 (32.99%), Postives = 115/197 (58.38%), Query Frame = 3 Query: 3 SLWFAKPKNYCEGLQEDQKIRNFIKNYIKKNIRISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNVQKELNCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVD 593 S WFAK ++ L++D +RN+++ + + R+ I++ ++ I+ P +++ + IE L+ ++Q + +++ I I P I+A+ IA QL+ RV FR+AMK+A++ ++ KGI++ +GRL+G +IAR+EW REGRVPL T+ A +DY + T YGVLG+K+W++ + Sbjct: 20 SKWFAKSTDFSTVLKQDIDVRNYLRQKLAN--------ASVGRVVIERPAKSARITIHSARPGVVIGKKGEDIEVLKRDLQVLMGV---PVHVNIEEIRRPELDAQIIADGIAQQLEKRVQFRRAMKRAMQNAMRSGAKGIKIMTSGRLNGADIARSEWYREGRVPLHTLRANVDYATSEAHTTYGVLGLKVWVYTE 205 The following BLAST results are available for this feature:
BLAST of CX069677 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CX069677 ID=CX069677; Name=CX069677; organism=Citrus sinensis; type=EST; length=821bpback to top |