CX069677

Overview
NameCX069677
Unique NameCX069677
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length821
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4021 contig Csv1_Contig4021:246..1066. BLAST: Citrus Unigene V1 Contigs to TAIR9
Homology
BLAST of CX069677 vs. ExPASy Swiss-Prot
Match: RS3_BURMA (30S ribosomal protein S3 OS=Burkholderia mallei GN=rpsC PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 8.980e-29
Identity = 64/195 (32.82%), Postives = 111/195 (56.92%), Query Frame = 3
Query:    3 SLWFAKPKNYCEGLQEDQKIRNFIKNYIKKNIRISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNVQKELNCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIF 587
            S W+A   N+   LQED  +R ++K  +K           + R+ I++     ++ I+   P +++  +   IE L+  +Q+ +      +++ I  I  P     ++A+ I  QL+ R+ FR+AMK+A++   +   +GI++  AGRL+G EIAR EW REGRVPL T+ A IDY +   +T YG++G+K+W++
Sbjct:   20 SRWYANNNNFAAMLQEDIGVREYLKKKLKN--------ASVGRVVIERPAKNARITIFSSRPGVVIGKKGEDIELLKTELQRRMGV---PVHVNIEEIRKPETDAQLIADSITQQLERRIMFRRAMKRAMQNAMRLGAQGIKIMSAGRLNGIEIARTEWYREGRVPLHTLRADIDYATSEAKTTYGIIGVKVWVY 203          
BLAST of CX069677 vs. ExPASy Swiss-Prot
Match: RS3_BURM9 (30S ribosomal protein S3 OS=Burkholderia mallei (strain NCTC 10229) GN=rpsC PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 8.980e-29
Identity = 64/195 (32.82%), Postives = 111/195 (56.92%), Query Frame = 3
Query:    3 SLWFAKPKNYCEGLQEDQKIRNFIKNYIKKNIRISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNVQKELNCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIF 587
            S W+A   N+   LQED  +R ++K  +K           + R+ I++     ++ I+   P +++  +   IE L+  +Q+ +      +++ I  I  P     ++A+ I  QL+ R+ FR+AMK+A++   +   +GI++  AGRL+G EIAR EW REGRVPL T+ A IDY +   +T YG++G+K+W++
Sbjct:   20 SRWYANNNNFAAMLQEDIGVREYLKKKLKN--------ASVGRVVIERPAKNARITIFSSRPGVVIGKKGEDIELLKTELQRRMGV---PVHVNIEEIRKPETDAQLIADSITQQLERRIMFRRAMKRAMQNAMRLGAQGIKIMSAGRLNGIEIARTEWYREGRVPLHTLRADIDYATSEAKTTYGIIGVKVWVY 203          
BLAST of CX069677 vs. ExPASy Swiss-Prot
Match: RS3_BURM7 (30S ribosomal protein S3 OS=Burkholderia mallei (strain NCTC 10247) GN=rpsC PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 8.980e-29
Identity = 64/195 (32.82%), Postives = 111/195 (56.92%), Query Frame = 3
Query:    3 SLWFAKPKNYCEGLQEDQKIRNFIKNYIKKNIRISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNVQKELNCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIF 587
            S W+A   N+   LQED  +R ++K  +K           + R+ I++     ++ I+   P +++  +   IE L+  +Q+ +      +++ I  I  P     ++A+ I  QL+ R+ FR+AMK+A++   +   +GI++  AGRL+G EIAR EW REGRVPL T+ A IDY +   +T YG++G+K+W++
Sbjct:   20 SRWYANNNNFAAMLQEDIGVREYLKKKLKN--------ASVGRVVIERPAKNARITIFSSRPGVVIGKKGEDIELLKTELQRRMGV---PVHVNIEEIRKPETDAQLIADSITQQLERRIMFRRAMKRAMQNAMRLGAQGIKIMSAGRLNGIEIARTEWYREGRVPLHTLRADIDYATSEAKTTYGIIGVKVWVY 203          
BLAST of CX069677 vs. ExPASy Swiss-Prot
Match: RS3_BURM1 (30S ribosomal protein S3 OS=Burkholderia multivorans (strain ATCC 17616 / 249) GN=rpsC PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 8.980e-29
Identity = 64/195 (32.82%), Postives = 111/195 (56.92%), Query Frame = 3
Query:    3 SLWFAKPKNYCEGLQEDQKIRNFIKNYIKKNIRISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNVQKELNCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIF 587
            S W+A   N+   LQED  +R ++K  +K           + R+ I++     ++ I+   P +++  +   IE L+  +Q+ +      +++ I  I  P     ++A+ I  QL+ R+ FR+AMK+A++   +   +GI++  AGRL+G EIAR EW REGRVPL T+ A IDY +   +T YG++G+K+W++
Sbjct:   20 SRWYANNNNFAAMLQEDIGVREYLKKKLKN--------ASVGRVVIERPAKNARITIFSSRPGVVIGKKGEDIELLKTELQRRMGV---PVHVNIEEIRKPETDAQLIADSITQQLERRIMFRRAMKRAMQNAMRLGAQGIKIMSAGRLNGIEIARTEWYREGRVPLHTLRADIDYATSEAKTTYGIIGVKVWVY 203          
BLAST of CX069677 vs. ExPASy Swiss-Prot
Match: RS3_BRUC2 (30S ribosomal protein S3 OS=Brucella canis (strain ATCC 23365 / NCTC 10854) GN=rpsC PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 8.980e-29
Identity = 69/198 (34.85%), Postives = 112/198 (56.57%), Query Frame = 3
Query:    3 SLWFAKPKNYCEGLQEDQKIRNFIKNYIKKNIRISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNVQKELNCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDE 596
            S W+A    Y + L ED KIR F+   +K+          I++I I++     +V I+   P +++  +   IE+L+  + +     N   ++ I  +  P     ++A+ IA QL+ RV+FR+AMK+A++   +   +GI++  +GRL G EIAR EW REGRVPL T+ A IDY +   +T YG+ G+K+W+F  E
Sbjct:   20 SRWYANTGEYGKLLHEDVKIREFLTEELKQ--------AAISKIVIERPHKKCRVTIHSARPGIIIGKKGADIEKLRKKLSE---MTNADTSLNIVEVRKPEVDATLIAQLIAQQLERRVAFRRAMKRAVQSAMRLGAEGIRINCSGRLGGAEIARMEWYREGRVPLHTLRADIDYGTAEAKTAYGICGVKVWVFKGE 206          
BLAST of CX069677 vs. ExPASy Swiss-Prot
Match: RS3_AZOSE (30S ribosomal protein S3 OS=Azoarcus sp. (strain EbN1) GN=rpsC PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 8.980e-29
Identity = 67/198 (33.84%), Postives = 112/198 (56.57%), Query Frame = 3
Query:    3 SLWFAKPKNYCEGLQEDQKIRNFIKNYIKKNIRISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNVQKELNCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDE 596
            S WFA   +Y   L ED K+R+F+K  +            + R+ I++     ++ ++   P +++  +   IE L+  +QK +      +++ I  +  P     ++A+ IA QL+ R+ FR+AMK+A++   +   +GI++  AGRL+G EIAR EW REGRVPL T+ A IDY     +T YG++GIK+W++  E
Sbjct:   20 SRWFASSGDYSRMLHEDLKVRDFLKKRLAH--------ASVGRVVIERPAKNARITLFSARPGVVIGKKGEDIELLKRELQKIMGV---PVHVNIEEVRKPEVDAKLIADSIAQQLEKRIMFRRAMKRAMQNAMRLGAQGIKIMSAGRLNGAEIARTEWYREGRVPLHTLRADIDYGVSEAKTTYGIIGIKVWVYKGE 206          
BLAST of CX069677 vs. ExPASy Swiss-Prot
Match: RS3_STRAW (30S ribosomal protein S3 OS=Streptomyces avermitilis GN=rpsC PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 1.173e-28
Identity = 67/204 (32.84%), Postives = 125/204 (61.27%), Query Frame = 3
Query:   21 PKNYCEGLQEDQKIR----NFIKNYIKKNIRI----SSGVE--GIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNVQKELNCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDEKK 602
            P  +  G+  D K R       K+Y+K+++ I    +SG+E  GI+++EI++  D ++V I+   P +++  R    + ++ +++K      +++ + I  + NP     ++A+ +A QL +RVSFR+AM+K+++   +A  KGI++Q  GRL G E++R+E+ REGRVPL T+ A +DY  +  +T +G +G+K+WI+  + K
Sbjct:    7 PHGFRLGITTDFKSRWYADKLYKDYVKEDVAIRRMMTSGMERAGISKVEIERTRDRVRVDIHTARPGIVIGRRGAEADRIRGDLEK---LTGKQVQLNILEVKNPETDAQLVAQAVAEQLSSRVSFRRAMRKSMQSAMKAGAKGIKIQCGGRLGGAEMSRSEFYREGRVPLHTLRANVDYGFFEAKTTFGRIGVKVWIYKGDVK 207          
BLAST of CX069677 vs. ExPASy Swiss-Prot
Match: RS3_NEIMF (30S ribosomal protein S3 OS=Neisseria meningitidis serogroup C / serotype 2a (strain ATCC 700532 / FAM18) GN=rpsC PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 1.173e-28
Identity = 65/197 (32.99%), Postives = 115/197 (58.38%), Query Frame = 3
Query:    3 SLWFAKPKNYCEGLQEDQKIRNFIKNYIKKNIRISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNVQKELNCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVD 593
            S WFAK  ++   L++D  +RN+++  +            + R+ I++     ++ I+   P +++  +   IE L+ ++Q  +      +++ I  I  P     I+A+ IA QL+ RV FR+AMK+A++   ++  KGI++  +GRL+G +IAR+EW REGRVPL T+ A +DY +    T YGVLG+K+W++ +
Sbjct:   20 SKWFAKSTDFSTVLKQDIDVRNYLRQKLAN--------ASVGRVVIERPAKSARITIHSARPGVVIGKKGEDIEVLKRDLQVLMGV---PVHVNIEEIRRPELDAQIIADGIAQQLEKRVQFRRAMKRAMQNAMRSGAKGIKIMTSGRLNGADIARSEWYREGRVPLHTLRANVDYATSEAHTTYGVLGLKVWVYTE 205          
BLAST of CX069677 vs. ExPASy Swiss-Prot
Match: RS3_NEIMB (30S ribosomal protein S3 OS=Neisseria meningitidis serogroup B GN=rpsC PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 1.173e-28
Identity = 65/197 (32.99%), Postives = 115/197 (58.38%), Query Frame = 3
Query:    3 SLWFAKPKNYCEGLQEDQKIRNFIKNYIKKNIRISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNVQKELNCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVD 593
            S WFAK  ++   L++D  +RN+++  +            + R+ I++     ++ I+   P +++  +   IE L+ ++Q  +      +++ I  I  P     I+A+ IA QL+ RV FR+AMK+A++   ++  KGI++  +GRL+G +IAR+EW REGRVPL T+ A +DY +    T YGVLG+K+W++ +
Sbjct:   20 SKWFAKSTDFSTVLKQDIDVRNYLRQKLAN--------ASVGRVVIERPAKSARITIHSARPGVVIGKKGEDIEVLKRDLQVLMGV---PVHVNIEEIRRPELDAQIIADGIAQQLEKRVQFRRAMKRAMQNAMRSGAKGIKIMTSGRLNGADIARSEWYREGRVPLHTLRANVDYATSEAHTTYGVLGLKVWVYTE 205          
BLAST of CX069677 vs. ExPASy Swiss-Prot
Match: RS3_NEIMA (30S ribosomal protein S3 OS=Neisseria meningitidis serogroup A GN=rpsC PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 1.173e-28
Identity = 65/197 (32.99%), Postives = 115/197 (58.38%), Query Frame = 3
Query:    3 SLWFAKPKNYCEGLQEDQKIRNFIKNYIKKNIRISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNVQKELNCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVD 593
            S WFAK  ++   L++D  +RN+++  +            + R+ I++     ++ I+   P +++  +   IE L+ ++Q  +      +++ I  I  P     I+A+ IA QL+ RV FR+AMK+A++   ++  KGI++  +GRL+G +IAR+EW REGRVPL T+ A +DY +    T YGVLG+K+W++ +
Sbjct:   20 SKWFAKSTDFSTVLKQDIDVRNYLRQKLAN--------ASVGRVVIERPAKSARITIHSARPGVVIGKKGEDIEVLKRDLQVLMGV---PVHVNIEEIRRPELDAQIIADGIAQQLEKRVQFRRAMKRAMQNAMRSGAKGIKIMTSGRLNGADIARSEWYREGRVPLHTLRANVDYATSEAHTTYGVLGLKVWVYTE 205          
The following BLAST results are available for this feature:
BLAST of CX069677 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RS3_BURMA8.980e-2932.8230S ribosomal protein S3 OS=Burkholderia mallei GN... [more]
RS3_BURM98.980e-2932.8230S ribosomal protein S3 OS=Burkholderia mallei (s... [more]
RS3_BURM78.980e-2932.8230S ribosomal protein S3 OS=Burkholderia mallei (s... [more]
RS3_BURM18.980e-2932.8230S ribosomal protein S3 OS=Burkholderia multivora... [more]
RS3_BRUC28.980e-2934.8530S ribosomal protein S3 OS=Brucella canis (strain... [more]
RS3_AZOSE8.980e-2933.8430S ribosomal protein S3 OS=Azoarcus sp. (strain E... [more]
RS3_STRAW1.173e-2832.8430S ribosomal protein S3 OS=Streptomyces avermitil... [more]
RS3_NEIMF1.173e-2832.9930S ribosomal protein S3 OS=Neisseria meningitidis... [more]
RS3_NEIMB1.173e-2832.9930S ribosomal protein S3 OS=Neisseria meningitidis... [more]
RS3_NEIMA1.173e-2832.9930S ribosomal protein S3 OS=Neisseria meningitidis... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_12B02_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-12B02-D4-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069677 ID=CX069677; Name=CX069677; organism=Citrus sinensis; type=EST; length=821bp
ATTCTCTTTGGTTTGCAAAACCAAAAAACTATTGCGAGGGTCTACAAGAA
GATCAAAAAATACGAAACTTTATTAAGAATTATATAAAAAAAAATATCAG
AATATCTTCCGGTGTTGAGGGAATTGCACGGATAGAGATTCAAAAAAGAA
TTGATCTAATTCAAGTTATAATCTATATAGGGTTCCCAAAATTATTACTA
GAAAATAGACCGCGAAGAATTGAAGAATTACAGATGAATGTACAAAAAGA
ACTTAATTGTGTGAATCGAAAAATAAACATTGCTATTACACGAATTACAA
ATCCTTATGGACACCCCAATATTCTTGCCGAATTTATAGCCGGACAATTA
AAAAATAGAGTTTCTTTTCGAAAAGCAATGAAAAAAGCTATTGAATTAAC
GGAACAGGCCGATACAAAAGGAATTCAAGTACAAATTGCAGGGCGTCTTG
ACGGAAAAGAAATTGCGCGCGCCGAATGGATCAGAGAAGGTAGAGTTCCT
CTACAAACCATTGGAGCTAAAATTGATTATTGTTCCTATACGGTTCGAAC
TATCTACGGGGTATTGGGAATCAAAATTTGGATATTTGTAGACGAAAAAA
AATAAGAGTTTACGGGTCTTTAGAGCCCCCCCATTAATGGAAATAAACCA
AACAAAGAACGAGCTCTTTTTATCTTCAATCAAAACAAAAATGAGAAATT
CCGCAATTCTATAGGGTTGAATAAAAATTCGATTGATTTTTTTTTTTTTA
TATAATTGCTATGCTTAGTGTGCGACTCGTTGGTTTTTTTTAGGGCTAGG
ATTCCAAAAAATGGACCGTCC
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