CX069677

Overview
NameCX069677
Unique NameCX069677
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length821
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX069677 vs. ExPASy Swiss-Prot
Match: RR3_PINKO (30S ribosomal protein S3, chloroplastic OS=Pinus koraiensis GN=rps3 PE=3 SV=1)

HSP 1 Score: 240.35 bits (612), Expect = 9.505e-63
Identity = 123/195 (63.08%), Postives = 154/195 (78.97%), Query Frame = 3
Query:    3 SLWFAKPKNYCEGLQEDQKIRNFIKNYIKKNIRISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLL-ENRPRRIEELQMNVQKELNCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWI 584
            S WFA+ +NY + L+EDQKIR  I+NY++ +I+ SS   GIAR+EI+++IDLIQV IYIGFP LLL E R + IE+L+ +V   L+  +RK++IAI ++  PY  PNILAE+IA QL+ RV FRK MKKAIEL E+ + +GIQ+QIAGRLDGKEIAR EW R GRVPLQTI A+IDYC Y V+TIYGVLGIKIWI
Sbjct:   20 SHWFAQQRNYSKDLREDQKIRTCIENYVRTHIKSSSNYGGIARVEIRRKIDLIQVKIYIGFPNLLLIEGRGQGIEKLRNDVLNMLDSADRKLHIAIEKVAKPYRKPNILAEYIALQLEKRVPFRKTMKKAIELAEREEVEGIQIQIAGRLDGKEIARVEWDRGGRVPLQTIRARIDYCYYPVQTIYGVLGIKIWI 214          
BLAST of CX069677 vs. ExPASy Swiss-Prot
Match: RR3_HUPLU (30S ribosomal protein S3, chloroplastic OS=Huperzia lucidula GN=rps3 PE=3 SV=1)

HSP 1 Score: 238.81 bits (608), Expect = 2.766e-62
Identity = 116/200 (58.00%), Postives = 156/200 (78.00%), Query Frame = 3
Query:    3 SLWFAKPKNYCEGLQEDQKIRNFIKNYIKKNIRISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNVQKEL-NCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDEK 599
            S WFAKP NY E LQED+K+RN I NY+ ++++ SS   G+AR+EIQ++ DLI V I+ GFP LL+E+  + IE+++ +VQ+ L +   R++++  T I  PYG PNILAE+IA QL+NRV+FR+ ++KAIEL ++ D KGI++QIAGRL+G EIAR EW REGRVPLQT+ A+IDYC Y  +TIYGVLGIKIWIF DE+
Sbjct:   20 SHWFAKPNNYSEFLQEDRKVRNCIDNYVHRHVKNSSNYGGVARVEIQRKTDLILVEIHTGFPALLVESHGQGIEQIRKDVQQNLLDSKIRRVHVTSTEIAKPYGEPNILAEYIAIQLENRVAFRRTIRKAIELAKETDIKGIKIQIAGRLNGTEIARVEWAREGRVPLQTLRAQIDYCYYPAQTIYGVLGIKIWIFRDEE 219          
BLAST of CX069677 vs. ExPASy Swiss-Prot
Match: RR3_PICAB (30S ribosomal protein S3, chloroplastic OS=Picea abies GN=rps3 PE=3 SV=1)

HSP 1 Score: 236.884 bits (603), Expect = 1.051e-61
Identity = 124/196 (63.27%), Postives = 154/196 (78.57%), Query Frame = 3
Query:    3 SLWFAKPKNYCEGLQEDQKIRNFIKNYIKKNIRISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLL-ENRP-RRIEELQMNVQKELNCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWI 584
            S WFA+ +NY + L+EDQKIR  I+NY++ +I+ SS   GIAR+EI ++IDLIQV IYIGFP LLL E R  + IE+L+ +V   L+ V+RK++IAI ++  PY  PNILAE+IA QL+ RV FRK MKKAIEL E+ + +GIQ+QIAGRLDGKEIAR EW R GRVPLQTI A+IDYC Y V+TIYGVLGIKIWI
Sbjct:   20 SHWFAQQRNYSKDLREDQKIRTCIENYVRTHIKSSSNYGGIARVEISRKIDLIQVKIYIGFPNLLLIEGRGFQGIEKLKNDVLNMLDSVDRKLHIAIEKVAKPYRKPNILAEYIALQLEKRVPFRKTMKKAIELAEREEVEGIQIQIAGRLDGKEIARVEWDRGGRVPLQTIRARIDYCYYPVQTIYGVLGIKIWI 215          
BLAST of CX069677 vs. ExPASy Swiss-Prot
Match: RR3_ANGEV (30S ribosomal protein S3, chloroplastic OS=Angiopteris evecta GN=rps3 PE=3 SV=1)

HSP 1 Score: 231.491 bits (589), Expect = 4.415e-60
Identity = 112/199 (56.28%), Postives = 149/199 (74.87%), Query Frame = 3
Query:    3 SLWFAKPKNYCEGLQEDQKIRNFIKNYIKKNIRISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNVQKELNCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDEK 599
            S WFA+PKNY + L+ED+K+R  I+ Y++K I+ SS   GIARIEI+ + DL+Q+ IY GFP  L+E     I++L+ N++  L   ++KI I +  +  PYG P ILAE IA QL+NRV+FR+ +KKAIEL ++ D KGI++QIAGRL+G EIAR EW+REGRVPLQTI A I+YC Y  +TIYGVLGIKIW+F DE+
Sbjct:   20 SYWFAQPKNYSKFLEEDEKVRTCIEKYVQKQIKNSSNYGGIARIEIEGKTDLLQIEIYTGFPDSLVEENGLGIDKLRTNIENLLKKKSQKIQITLKNVLQPYGEPRILAEHIALQLENRVAFRRTVKKAIELAKKTDIKGIKIQIAGRLNGNEIARVEWVREGRVPLQTIRAHINYCYYPAQTIYGVLGIKIWVFRDEE 218          
BLAST of CX069677 vs. ExPASy Swiss-Prot
Match: RR3_PELHO (30S ribosomal protein S3, chloroplastic OS=Pelargonium hortorum GN=rps3-A PE=3 SV=1)

HSP 1 Score: 228.794 bits (582), Expect = 2.862e-59
Identity = 119/200 (59.50%), Postives = 157/200 (78.50%), Query Frame = 3
Query:    3 SLWFAKPKNYCEGLQEDQKIRNFIKNYIKKNIRISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRP--RRIEELQMNVQKELNCV-NRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRLDGK--EIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIF 587
            S+WF K K+Y EGLQED KIR  I+NYI+K  RISS  + I+RI+I K ID+++VIIY+GF +LL E+ P   +I+ELQ++++K ++ + NRK+N+A+ ++  PYG P IL ++IA QLKNRVSFRK MKKA+EL E+A  KGIQVQIAG + GK  E+AR EW+R+GRVPLQT+ AKID+CS  V TI GVLGIK+WIF
Sbjct:   20 SIWFEKRKDYSEGLQEDHKIREHIQNYIEKE-RISSDSDVISRIQIDKSIDVVKVIIYMGFSQLLTEDEPPKTKIKELQVSLKKAIHFIQNRKLNLAVRKMKKPYGDPTILGKYIANQLKNRVSFRKVMKKAVELVEKAYKKGIQVQIAGCIGGKAQEMARVEWLRKGRVPLQTVTAKIDFCSTQVITIRGVLGIKVWIF 218          
BLAST of CX069677 vs. ExPASy Swiss-Prot
Match: RR3_MARPO (30S ribosomal protein S3, chloroplastic OS=Marchantia polymorpha GN=rps3 PE=3 SV=1)

HSP 1 Score: 225.713 bits (574), Expect = 2.423e-58
Identity = 112/199 (56.28%), Postives = 154/199 (77.39%), Query Frame = 3
Query:    3 SLWFAKPKNYCEGLQEDQKIRNFIKNYIKKNIRISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNVQKELNCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDEK 599
            S WFA  K Y +  +ED+KIR+ I+ Y++K+I+ SS   GIAR+EI+++ DLIQV IY GFP LL+E+R + IE+L++NVQ  L+  +R++ + +  I  PYG P ILA+ IA +L++RV+FR+ MKKAIEL ++ + KGI++QIAGRL+G EIAR EW REGRVPLQTI A+I+YC Y  +TIYGVLGIK+WIF DE+
Sbjct:   20 SYWFAN-KKYSKVFEEDKKIRDCIELYVQKHIKNSSNYGGIARVEIKRKTDLIQVEIYTGFPALLVESRGQGIEQLKLNVQNILSSEDRRLRMTLIEIAKPYGEPKILAKKIALKLESRVAFRRTMKKAIELAKKGNIKGIKIQIAGRLNGAEIARVEWAREGRVPLQTIRARINYCYYAAQTIYGVLGIKVWIFQDEE 217          
BLAST of CX069677 vs. ExPASy Swiss-Prot
Match: RR3_CHAVU (30S ribosomal protein S3, chloroplastic OS=Chara vulgaris GN=rps3 PE=3 SV=1)

HSP 1 Score: 218.394 bits (555), Expect = 3.868e-56
Identity = 106/195 (54.36%), Postives = 146/195 (74.87%), Query Frame = 3
Query:    3 SLWFAKPKNYCEGLQEDQKIRNFIKNYIKKNIRISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNVQKELNCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIF 587
            S WFAK  +Y E LQED++IR+ I N+I+ ++R SS   GIARI I +R DL+Q+ I+ GFP LL+ENR R +E L+ ++Q++++   RK+ + +  +  PY  P ILAE+IA QL+NRV+FR+ MKKAI+L + +D KGI++QIAGRL+G EIAR EWI++GR+PLQ + A I YC Y   TIYGVLGIK+WIF
Sbjct:   20 SHWFAKANSYSELLQEDKEIRSCIYNHIRNHVRNSSNYGGIARINIYRRTDLVQLQIHTGFPALLIENRIRGLEHLRRDIQEKIDHKKRKLRMTLVEVLKPYTEPTILAEYIALQLENRVAFRRVMKKAIQLAKISDIKGIKIQIAGRLNGAEIARNEWIQKGRLPLQMLRANIHYCHYPAHTIYGVLGIKVWIF 214          
BLAST of CX069677 vs. ExPASy Swiss-Prot
Match: RR3_ADICA (30S ribosomal protein S3, chloroplastic OS=Adiantum capillus-veneris GN=rps3 PE=2 SV=2)

HSP 1 Score: 213.001 bits (541), Expect = 1.625e-54
Identity = 99/197 (50.25%), Postives = 141/197 (71.57%), Query Frame = 3
Query:    3 SLWFAKPKNYCEGLQEDQKIRNFIKNYIKKNIRISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNVQKELNCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVD 593
            S WFA+ K+Y + L+ED+KIRN ++ YI+K+++  S   G+  IEIQ++ DLIQ+ IY GFP LL+E +   I +++ +++  L   ++ + + +T +  PYG P ILAE +A QLKNRV FR+ MKK IE+  + +  GI++QIAGRL+G E+AR EW REGRVPLQT+ A I YC +  +TIYGVLGIKIW+F D
Sbjct:   20 SYWFAQKKDYPKFLEEDRKIRNLVEKYIQKHVKSVSNYGGVGHIEIQRKTDLIQINIYTGFPDLLIEEQSLGISQMKQDLRNLLGLESQNLRVTLTGVIQPYGEPKILAEHVASQLKNRVPFRRTMKKTIEMAGRTNGGGIKIQIAGRLNGSEMARVEWAREGRVPLQTVEANISYCYHPAQTIYGVLGIKIWVFRD 216          
BLAST of CX069677 vs. ExPASy Swiss-Prot
Match: RR3_SPIMX (30S ribosomal protein S3, chloroplastic OS=Spirogyra maxima GN=rps3 PE=3 SV=1)

HSP 1 Score: 211.846 bits (538), Expect = 3.620e-54
Identity = 108/200 (54.00%), Postives = 145/200 (72.50%), Query Frame = 3
Query:    3 SLWFAKPKNYCEGLQEDQKIRNFIKNYIKKNIRISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNVQKELNCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELT-EQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDEK 599
            S WFA+P  Y + L+ED+KIRN IK Y++ +IR SS   GI+R++IQ++ DL+QV I+ GFP LL+E R + +  L+ +V   ++   RK+ I ++ I   Y   NILAE+IA QL++RV+FR+ MKKAI+L  EQ   KGI++QIAGRL+G EIAR EW REGRVPLQT+ A IDYC Y  +T YGVLGIK+WIF  E+
Sbjct:   20 SNWFARPSRYSDLLEEDEKIRNCIKEYVRTHIRNSSNYGGISRVKIQRKTDLVQVDIHTGFPALLIEGRGKGLLVLKQSVLNSIS-TERKLKITLSEIDKYYAEANILAEYIALQLESRVAFRRTMKKAIQLAMEQGKVKGIKIQIAGRLNGAEIARIEWAREGRVPLQTLRACIDYCHYPAQTTYGVLGIKVWIFKGEE 218          
BLAST of CX069677 vs. ExPASy Swiss-Prot
Match: RR3_ZYGCR (30S ribosomal protein S3, chloroplastic OS=Zygnema circumcarinatum GN=rps3 PE=3 SV=1)

HSP 1 Score: 208.764 bits (530), Expect = 3.065e-53
Identity = 107/205 (52.20%), Postives = 148/205 (72.20%), Query Frame = 3
Query:    3 SLWFAKPKNYCEGLQEDQKIRNFIKNYIKKNIRISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENR-PRR--------IEELQMNVQKELNCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQA-DTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIF 587
            S WFA   NY E L+ED++IRN I+ Y++K +R SS    IAR++IQK+ DL++V I+   P LL++ R P R        IE L+ N+Q  LN  NRK+N+ ++++  PYG   ILAE+IA QL++RV+FRK MK+AI+L  ++ + +GI++QIAGRL+G EIAR EW REGRVPL T+ A+IDYC Y  +TIYGVLGIK+W+F
Sbjct:   20 STWFAPLNNYSELLKEDERIRNCIQQYVRKYVRSSSRSAEIARVQIQKKTDLVEVQIHTASPSLLVQTRVPNRSTNTQEIGIEYLRRNIQNTLNPGNRKLNMTLSQVAKPYGEAIILAEYIALQLESRVAFRKTMKQAIKLANKSGNARGIKIQIAGRLNGAEIARVEWAREGRVPLHTLRAQIDYCHYPAQTIYGVLGIKVWVF 224          
The following BLAST results are available for this feature:
BLAST of CX069677 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RR3_PINKO9.505e-6363.0830S ribosomal protein S3, chloroplastic OS=Pinus k... [more]
RR3_HUPLU2.766e-6258.0030S ribosomal protein S3, chloroplastic OS=Huperzi... [more]
RR3_PICAB1.051e-6163.2730S ribosomal protein S3, chloroplastic OS=Picea a... [more]
RR3_ANGEV4.415e-6056.2830S ribosomal protein S3, chloroplastic OS=Angiopt... [more]
RR3_PELHO2.862e-5959.5030S ribosomal protein S3, chloroplastic OS=Pelargo... [more]
RR3_MARPO2.423e-5856.2830S ribosomal protein S3, chloroplastic OS=Marchan... [more]
RR3_CHAVU3.868e-5654.3630S ribosomal protein S3, chloroplastic OS=Chara v... [more]
RR3_ADICA1.625e-5450.2530S ribosomal protein S3, chloroplastic OS=Adiantu... [more]
RR3_SPIMX3.620e-5454.0030S ribosomal protein S3, chloroplastic OS=Spirogy... [more]
RR3_ZYGCR3.065e-5352.2030S ribosomal protein S3, chloroplastic OS=Zygnema... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_12B02_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-12B02-D4-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069677 ID=CX069677; Name=CX069677; organism=Citrus sinensis; type=EST; length=821bp
ATTCTCTTTGGTTTGCAAAACCAAAAAACTATTGCGAGGGTCTACAAGAA
GATCAAAAAATACGAAACTTTATTAAGAATTATATAAAAAAAAATATCAG
AATATCTTCCGGTGTTGAGGGAATTGCACGGATAGAGATTCAAAAAAGAA
TTGATCTAATTCAAGTTATAATCTATATAGGGTTCCCAAAATTATTACTA
GAAAATAGACCGCGAAGAATTGAAGAATTACAGATGAATGTACAAAAAGA
ACTTAATTGTGTGAATCGAAAAATAAACATTGCTATTACACGAATTACAA
ATCCTTATGGACACCCCAATATTCTTGCCGAATTTATAGCCGGACAATTA
AAAAATAGAGTTTCTTTTCGAAAAGCAATGAAAAAAGCTATTGAATTAAC
GGAACAGGCCGATACAAAAGGAATTCAAGTACAAATTGCAGGGCGTCTTG
ACGGAAAAGAAATTGCGCGCGCCGAATGGATCAGAGAAGGTAGAGTTCCT
CTACAAACCATTGGAGCTAAAATTGATTATTGTTCCTATACGGTTCGAAC
TATCTACGGGGTATTGGGAATCAAAATTTGGATATTTGTAGACGAAAAAA
AATAAGAGTTTACGGGTCTTTAGAGCCCCCCCATTAATGGAAATAAACCA
AACAAAGAACGAGCTCTTTTTATCTTCAATCAAAACAAAAATGAGAAATT
CCGCAATTCTATAGGGTTGAATAAAAATTCGATTGATTTTTTTTTTTTTA
TATAATTGCTATGCTTAGTGTGCGACTCGTTGGTTTTTTTTAGGGCTAGG
ATTCCAAAAAATGGACCGTCC
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