CX069677
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX069677 vs. ExPASy Swiss-Prot
Match: RR3_PINKO (30S ribosomal protein S3, chloroplastic OS=Pinus koraiensis GN=rps3 PE=3 SV=1) HSP 1 Score: 240.35 bits (612), Expect = 9.505e-63 Identity = 123/195 (63.08%), Postives = 154/195 (78.97%), Query Frame = 3 Query: 3 SLWFAKPKNYCEGLQEDQKIRNFIKNYIKKNIRISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLL-ENRPRRIEELQMNVQKELNCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWI 584 S WFA+ +NY + L+EDQKIR I+NY++ +I+ SS GIAR+EI+++IDLIQV IYIGFP LLL E R + IE+L+ +V L+ +RK++IAI ++ PY PNILAE+IA QL+ RV FRK MKKAIEL E+ + +GIQ+QIAGRLDGKEIAR EW R GRVPLQTI A+IDYC Y V+TIYGVLGIKIWI Sbjct: 20 SHWFAQQRNYSKDLREDQKIRTCIENYVRTHIKSSSNYGGIARVEIRRKIDLIQVKIYIGFPNLLLIEGRGQGIEKLRNDVLNMLDSADRKLHIAIEKVAKPYRKPNILAEYIALQLEKRVPFRKTMKKAIELAEREEVEGIQIQIAGRLDGKEIARVEWDRGGRVPLQTIRARIDYCYYPVQTIYGVLGIKIWI 214
BLAST of CX069677 vs. ExPASy Swiss-Prot
Match: RR3_HUPLU (30S ribosomal protein S3, chloroplastic OS=Huperzia lucidula GN=rps3 PE=3 SV=1) HSP 1 Score: 238.81 bits (608), Expect = 2.766e-62 Identity = 116/200 (58.00%), Postives = 156/200 (78.00%), Query Frame = 3 Query: 3 SLWFAKPKNYCEGLQEDQKIRNFIKNYIKKNIRISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNVQKEL-NCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDEK 599 S WFAKP NY E LQED+K+RN I NY+ ++++ SS G+AR+EIQ++ DLI V I+ GFP LL+E+ + IE+++ +VQ+ L + R++++ T I PYG PNILAE+IA QL+NRV+FR+ ++KAIEL ++ D KGI++QIAGRL+G EIAR EW REGRVPLQT+ A+IDYC Y +TIYGVLGIKIWIF DE+ Sbjct: 20 SHWFAKPNNYSEFLQEDRKVRNCIDNYVHRHVKNSSNYGGVARVEIQRKTDLILVEIHTGFPALLVESHGQGIEQIRKDVQQNLLDSKIRRVHVTSTEIAKPYGEPNILAEYIAIQLENRVAFRRTIRKAIELAKETDIKGIKIQIAGRLNGTEIARVEWAREGRVPLQTLRAQIDYCYYPAQTIYGVLGIKIWIFRDEE 219
BLAST of CX069677 vs. ExPASy Swiss-Prot
Match: RR3_PICAB (30S ribosomal protein S3, chloroplastic OS=Picea abies GN=rps3 PE=3 SV=1) HSP 1 Score: 236.884 bits (603), Expect = 1.051e-61 Identity = 124/196 (63.27%), Postives = 154/196 (78.57%), Query Frame = 3 Query: 3 SLWFAKPKNYCEGLQEDQKIRNFIKNYIKKNIRISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLL-ENRP-RRIEELQMNVQKELNCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWI 584 S WFA+ +NY + L+EDQKIR I+NY++ +I+ SS GIAR+EI ++IDLIQV IYIGFP LLL E R + IE+L+ +V L+ V+RK++IAI ++ PY PNILAE+IA QL+ RV FRK MKKAIEL E+ + +GIQ+QIAGRLDGKEIAR EW R GRVPLQTI A+IDYC Y V+TIYGVLGIKIWI Sbjct: 20 SHWFAQQRNYSKDLREDQKIRTCIENYVRTHIKSSSNYGGIARVEISRKIDLIQVKIYIGFPNLLLIEGRGFQGIEKLKNDVLNMLDSVDRKLHIAIEKVAKPYRKPNILAEYIALQLEKRVPFRKTMKKAIELAEREEVEGIQIQIAGRLDGKEIARVEWDRGGRVPLQTIRARIDYCYYPVQTIYGVLGIKIWI 215
BLAST of CX069677 vs. ExPASy Swiss-Prot
Match: RR3_ANGEV (30S ribosomal protein S3, chloroplastic OS=Angiopteris evecta GN=rps3 PE=3 SV=1) HSP 1 Score: 231.491 bits (589), Expect = 4.415e-60 Identity = 112/199 (56.28%), Postives = 149/199 (74.87%), Query Frame = 3 Query: 3 SLWFAKPKNYCEGLQEDQKIRNFIKNYIKKNIRISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNVQKELNCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDEK 599 S WFA+PKNY + L+ED+K+R I+ Y++K I+ SS GIARIEI+ + DL+Q+ IY GFP L+E I++L+ N++ L ++KI I + + PYG P ILAE IA QL+NRV+FR+ +KKAIEL ++ D KGI++QIAGRL+G EIAR EW+REGRVPLQTI A I+YC Y +TIYGVLGIKIW+F DE+ Sbjct: 20 SYWFAQPKNYSKFLEEDEKVRTCIEKYVQKQIKNSSNYGGIARIEIEGKTDLLQIEIYTGFPDSLVEENGLGIDKLRTNIENLLKKKSQKIQITLKNVLQPYGEPRILAEHIALQLENRVAFRRTVKKAIELAKKTDIKGIKIQIAGRLNGNEIARVEWVREGRVPLQTIRAHINYCYYPAQTIYGVLGIKIWVFRDEE 218
BLAST of CX069677 vs. ExPASy Swiss-Prot
Match: RR3_PELHO (30S ribosomal protein S3, chloroplastic OS=Pelargonium hortorum GN=rps3-A PE=3 SV=1) HSP 1 Score: 228.794 bits (582), Expect = 2.862e-59 Identity = 119/200 (59.50%), Postives = 157/200 (78.50%), Query Frame = 3 Query: 3 SLWFAKPKNYCEGLQEDQKIRNFIKNYIKKNIRISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRP--RRIEELQMNVQKELNCV-NRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRLDGK--EIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIF 587 S+WF K K+Y EGLQED KIR I+NYI+K RISS + I+RI+I K ID+++VIIY+GF +LL E+ P +I+ELQ++++K ++ + NRK+N+A+ ++ PYG P IL ++IA QLKNRVSFRK MKKA+EL E+A KGIQVQIAG + GK E+AR EW+R+GRVPLQT+ AKID+CS V TI GVLGIK+WIF Sbjct: 20 SIWFEKRKDYSEGLQEDHKIREHIQNYIEKE-RISSDSDVISRIQIDKSIDVVKVIIYMGFSQLLTEDEPPKTKIKELQVSLKKAIHFIQNRKLNLAVRKMKKPYGDPTILGKYIANQLKNRVSFRKVMKKAVELVEKAYKKGIQVQIAGCIGGKAQEMARVEWLRKGRVPLQTVTAKIDFCSTQVITIRGVLGIKVWIF 218
BLAST of CX069677 vs. ExPASy Swiss-Prot
Match: RR3_MARPO (30S ribosomal protein S3, chloroplastic OS=Marchantia polymorpha GN=rps3 PE=3 SV=1) HSP 1 Score: 225.713 bits (574), Expect = 2.423e-58 Identity = 112/199 (56.28%), Postives = 154/199 (77.39%), Query Frame = 3 Query: 3 SLWFAKPKNYCEGLQEDQKIRNFIKNYIKKNIRISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNVQKELNCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDEK 599 S WFA K Y + +ED+KIR+ I+ Y++K+I+ SS GIAR+EI+++ DLIQV IY GFP LL+E+R + IE+L++NVQ L+ +R++ + + I PYG P ILA+ IA +L++RV+FR+ MKKAIEL ++ + KGI++QIAGRL+G EIAR EW REGRVPLQTI A+I+YC Y +TIYGVLGIK+WIF DE+ Sbjct: 20 SYWFAN-KKYSKVFEEDKKIRDCIELYVQKHIKNSSNYGGIARVEIKRKTDLIQVEIYTGFPALLVESRGQGIEQLKLNVQNILSSEDRRLRMTLIEIAKPYGEPKILAKKIALKLESRVAFRRTMKKAIELAKKGNIKGIKIQIAGRLNGAEIARVEWAREGRVPLQTIRARINYCYYAAQTIYGVLGIKVWIFQDEE 217
BLAST of CX069677 vs. ExPASy Swiss-Prot
Match: RR3_CHAVU (30S ribosomal protein S3, chloroplastic OS=Chara vulgaris GN=rps3 PE=3 SV=1) HSP 1 Score: 218.394 bits (555), Expect = 3.868e-56 Identity = 106/195 (54.36%), Postives = 146/195 (74.87%), Query Frame = 3 Query: 3 SLWFAKPKNYCEGLQEDQKIRNFIKNYIKKNIRISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNVQKELNCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIF 587 S WFAK +Y E LQED++IR+ I N+I+ ++R SS GIARI I +R DL+Q+ I+ GFP LL+ENR R +E L+ ++Q++++ RK+ + + + PY P ILAE+IA QL+NRV+FR+ MKKAI+L + +D KGI++QIAGRL+G EIAR EWI++GR+PLQ + A I YC Y TIYGVLGIK+WIF Sbjct: 20 SHWFAKANSYSELLQEDKEIRSCIYNHIRNHVRNSSNYGGIARINIYRRTDLVQLQIHTGFPALLIENRIRGLEHLRRDIQEKIDHKKRKLRMTLVEVLKPYTEPTILAEYIALQLENRVAFRRVMKKAIQLAKISDIKGIKIQIAGRLNGAEIARNEWIQKGRLPLQMLRANIHYCHYPAHTIYGVLGIKVWIF 214
BLAST of CX069677 vs. ExPASy Swiss-Prot
Match: RR3_ADICA (30S ribosomal protein S3, chloroplastic OS=Adiantum capillus-veneris GN=rps3 PE=2 SV=2) HSP 1 Score: 213.001 bits (541), Expect = 1.625e-54 Identity = 99/197 (50.25%), Postives = 141/197 (71.57%), Query Frame = 3 Query: 3 SLWFAKPKNYCEGLQEDQKIRNFIKNYIKKNIRISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNVQKELNCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVD 593 S WFA+ K+Y + L+ED+KIRN ++ YI+K+++ S G+ IEIQ++ DLIQ+ IY GFP LL+E + I +++ +++ L ++ + + +T + PYG P ILAE +A QLKNRV FR+ MKK IE+ + + GI++QIAGRL+G E+AR EW REGRVPLQT+ A I YC + +TIYGVLGIKIW+F D Sbjct: 20 SYWFAQKKDYPKFLEEDRKIRNLVEKYIQKHVKSVSNYGGVGHIEIQRKTDLIQINIYTGFPDLLIEEQSLGISQMKQDLRNLLGLESQNLRVTLTGVIQPYGEPKILAEHVASQLKNRVPFRRTMKKTIEMAGRTNGGGIKIQIAGRLNGSEMARVEWAREGRVPLQTVEANISYCYHPAQTIYGVLGIKIWVFRD 216
BLAST of CX069677 vs. ExPASy Swiss-Prot
Match: RR3_SPIMX (30S ribosomal protein S3, chloroplastic OS=Spirogyra maxima GN=rps3 PE=3 SV=1) HSP 1 Score: 211.846 bits (538), Expect = 3.620e-54 Identity = 108/200 (54.00%), Postives = 145/200 (72.50%), Query Frame = 3 Query: 3 SLWFAKPKNYCEGLQEDQKIRNFIKNYIKKNIRISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNVQKELNCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELT-EQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDEK 599 S WFA+P Y + L+ED+KIRN IK Y++ +IR SS GI+R++IQ++ DL+QV I+ GFP LL+E R + + L+ +V ++ RK+ I ++ I Y NILAE+IA QL++RV+FR+ MKKAI+L EQ KGI++QIAGRL+G EIAR EW REGRVPLQT+ A IDYC Y +T YGVLGIK+WIF E+ Sbjct: 20 SNWFARPSRYSDLLEEDEKIRNCIKEYVRTHIRNSSNYGGISRVKIQRKTDLVQVDIHTGFPALLIEGRGKGLLVLKQSVLNSIS-TERKLKITLSEIDKYYAEANILAEYIALQLESRVAFRRTMKKAIQLAMEQGKVKGIKIQIAGRLNGAEIARIEWAREGRVPLQTLRACIDYCHYPAQTTYGVLGIKVWIFKGEE 218
BLAST of CX069677 vs. ExPASy Swiss-Prot
Match: RR3_ZYGCR (30S ribosomal protein S3, chloroplastic OS=Zygnema circumcarinatum GN=rps3 PE=3 SV=1) HSP 1 Score: 208.764 bits (530), Expect = 3.065e-53 Identity = 107/205 (52.20%), Postives = 148/205 (72.20%), Query Frame = 3 Query: 3 SLWFAKPKNYCEGLQEDQKIRNFIKNYIKKNIRISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENR-PRR--------IEELQMNVQKELNCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQA-DTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIF 587 S WFA NY E L+ED++IRN I+ Y++K +R SS IAR++IQK+ DL++V I+ P LL++ R P R IE L+ N+Q LN NRK+N+ ++++ PYG ILAE+IA QL++RV+FRK MK+AI+L ++ + +GI++QIAGRL+G EIAR EW REGRVPL T+ A+IDYC Y +TIYGVLGIK+W+F Sbjct: 20 STWFAPLNNYSELLKEDERIRNCIQQYVRKYVRSSSRSAEIARVQIQKKTDLVEVQIHTASPSLLVQTRVPNRSTNTQEIGIEYLRRNIQNTLNPGNRKLNMTLSQVAKPYGEAIILAEYIALQLESRVAFRKTMKQAIKLANKSGNARGIKIQIAGRLNGAEIARVEWAREGRVPLHTLRAQIDYCHYPAQTIYGVLGIKVWVF 224 The following BLAST results are available for this feature:
BLAST of CX069677 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CX069677 ID=CX069677; Name=CX069677; organism=Citrus sinensis; type=EST; length=821bpback to top |