CX069677

Overview
NameCX069677
Unique NameCX069677
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length821
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX069677 vs. ExPASy Swiss-Prot
Match: RR3_STAPU (30S ribosomal protein S3, chloroplastic OS=Staurastrum punctulatum GN=rps3 PE=3 SV=1)

HSP 1 Score: 199.904 bits (507), Expect = 1.424e-50
Identity = 101/200 (50.50%), Postives = 139/200 (69.50%), Query Frame = 3
Query:    3 SLWFAKPKNYCEGLQEDQKIRNFIKNYIKKNIRISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNVQKELN-CVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELT-EQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDE 596
            S W  +P  Y E LQED+K+R  IK Y++K +R +    GI RIEIQ++   I+V I+ GFPKL +E    R++E++  +Q  L    + K  I++  +  PY    ILAE+IA Q++ RV+FRK +KKAI+L  EQ + KGI++QIAGRL+G EIAR+EW REGRVPLQT+ A+IDYC Y   TIYGVLGI++WIF ++
Sbjct:   20 SNWCVQPSQYSELLQEDEKLRGCIKEYVRKYVRTAENYGGIDRIEIQRKTSAIKVEIHTGFPKLFVEKLGPRLKEIRREMQNTLQKSKHLKFIISLAEVEKPYAKATILAEYIAVQVERRVAFRKTIKKAIQLAKEQGNVKGIKIQIAGRLNGAEIARSEWAREGRVPLQTLRAQIDYCHYPAHTIYGVLGIRVWIFQEK 219          
BLAST of CX069677 vs. ExPASy Swiss-Prot
Match: RR3_PSINU (30S ribosomal protein S3, chloroplastic OS=Psilotum nudum GN=rps3 PE=3 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 1.205e-49
Identity = 103/201 (51.24%), Postives = 144/201 (71.64%), Query Frame = 3
Query:    3 SLWFAKPKN-YCEGLQEDQKIRNFIKNYIKKNIRISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNVQKELNCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTK-GIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDEK 599
            S WFA+ K  Y + ++ED++IRN I+ Y++K+        GIARIEI ++ DLI+V I++GF  LL EN   R E+L+ N++K +N  N+K+ + + +I  PY  P +LAE+IA QL+NRV FRKA+KKA+EL      K GI++QIAGRL+G EIAR EW REGRVPLQTI A I+Y  Y  +TIYG+LGIK+WI+ +++
Sbjct:   20 SYWFAQSKKIYSKLVKEDKEIRNCIEKYVQKHTNNPFHYGGIARIEIYRKTDLIRVEIHMGFTDLLTENGGIRFEQLKSNIEKIVNSKNQKLCLILIKIDKPYTEPKVLAEYIALQLENRVVFRKAVKKALELAGNFKNKGGIKIQIAGRLNGIEIARVEWTREGRVPLQTIRAHINYYYYPAKTIYGILGIKVWIYQNDE 220          
BLAST of CX069677 vs. ExPASy Swiss-Prot
Match: RR3_CHAGL (30S ribosomal protein S3, chloroplastic OS=Chaetosphaeridium globosum GN=rps3 PE=3 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 1.924e-47
Identity = 105/233 (45.06%), Postives = 146/233 (62.66%), Query Frame = 3
Query:    3 SLWFAKPKNYCEGLQEDQKIRNFIKNYIKKNIRISS----GVEGIARIEIQKRIDLIQVIIYI-GFPKLLL-----------------------------ENRPRRIEELQMNVQKELNCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAI-ELTEQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDE 596
            S WFA  K +   L+EDQKIR++I  Y++K+IR SS    G  G+++IEI++  +LI V I+  GFP LL+                             +N  + +E++   VQ+ L   N K  + +++++NPY   NI+AE+IA QL+NRV+FR+AMK+AI +  E    KGI++QI+GRL+G EIAR EW REGRVPLQT+ AKIDYC Y  +T YGVLGIK+WIF  E
Sbjct:   20 SYWFATNKQFAGFLEEDQKIRHYIYQYVQKHIRESSNTSYGYSGVSKIEIKRDTELIHVEIHTSGFPALLIKGQIKEKNRDKNKSNKNSALDQSVNKNQNKNTGQELEKMWRYVQRSLTLSNGKFRMTLSKVSNPYKEANIVAEYIARQLENRVAFRRAMKQAIKDAKENGQVKGIKIQISGRLNGAEIARVEWAREGRVPLQTLRAKIDYCHYPAQTKYGVLGIKVWIFQGE 252          
BLAST of CX069677 vs. ExPASy Swiss-Prot
Match: RR3_CHLAT (30S ribosomal protein S3, chloroplastic OS=Chlorokybus atmophyticus GN=rps3 PE=3 SV=2)

HSP 1 Score: 166.777 bits (421), Expect = 1.336e-40
Identity = 87/199 (43.72%), Postives = 128/199 (64.32%), Query Frame = 3
Query:    3 SLWFAKPKNYCEGLQEDQKIRNFIKNYIKKNIRISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNVQKELNCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDEK 599
            S WFAKP  Y + LQED  IRNF++  +           GIARI+IQ++ D +++ +    P L++    + +E L  ++Q++     R+  I IT I  P     ++AEFIA +L+ R  FR+AM++AI+   +A  +GI++Q+AGRL+G EIAR+EW+REGRVPLQT+ A IDY     +TIYG+LGIK+W+F  EK
Sbjct:   20 SHWFAKPAQYRQLLQEDNSIRNFLRTKLIN--------AGIARIDIQRKADQVEIEVRTARPGLIVGRSGKGVENLLRDLQEQFKN-KRRFRITITYIPEPDLESTLIAEFIAQRLEARAPFRRAMRQAIQRATRAGVEGIKIQVAGRLNGAEIARSEWVREGRVPLQTLRANIDYSYCQAKTIYGILGIKVWMFKGEK 209          
BLAST of CX069677 vs. ExPASy Swiss-Prot
Match: RR3_RHDSA (30S ribosomal protein S3, chloroplastic OS=Rhodomonas salina GN=rps3 PE=3 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 2.975e-40
Identity = 84/199 (42.21%), Postives = 134/199 (67.34%), Query Frame = 3
Query:    3 SLWFAKPKNYCEGLQEDQKIRNFIKNYIKKNIRISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNVQKELNCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDEK 599
            S WFA  KNY E L ED  IRN++K      + +SS   GI+++EI ++ D +++ I+   P +++      I+ ++ +++K +N  N +I I +T + N     N++AEFIA QL+ R++FR+A ++AI+  ++A+ +GI+VQ++GRL+G EIAR+EW+REGRVPLQT+ A IDY +    T YG LG+K+W+F  EK
Sbjct:   20 SSWFASSKNYPETLAEDYAIRNYVK------VNLSSA--GISKVEIHRKSDQVELEIHTSRPGIIVGRSGSGIDTIKEDLRKIIN-KNNQIRINVTELKNVDADANLIAEFIAQQLEKRIAFRRATRQAIQRAQRANVQGIKVQVSGRLNGAEIARSEWVREGRVPLQTLRADIDYATKEADTTYGKLGVKVWVFNGEK 209          
BLAST of CX069677 vs. ExPASy Swiss-Prot
Match: RR3_PORPU (30S ribosomal protein S3, chloroplastic OS=Porphyra purpurea GN=rps3 PE=3 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 3.886e-40
Identity = 83/198 (41.92%), Postives = 130/198 (65.66%), Query Frame = 3
Query:    3 SLWFAKPKNYCEGLQEDQKIRNFIKNYIKKNIRISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNVQKELNCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDE 596
            S WFA  K+Y   LQED KIR+FI   +            IA+IEI ++ D ++V+I    P ++L      IE L+ ++   L+  N++I + +  I++P     ++AEFI  QL+ RV+FR+A+++A++  ++A+T+G+++Q++GRL+G EIAR+EW+REGRVPLQT+ A IDYC     T YGVLG+K+W+F  E
Sbjct:   20 SSWFASSKDYSVLLQEDHKIRSFIHGKLSN--------ASIAKIEINRKADQVEVLIATARPGIVLGKSGAGIESLRNSLTLILD-PNKQIRVNVVEISDPDSEATLVAEFITQQLEKRVAFRRAVRQAVQRAQRANTQGVKIQVSGRLNGAEIARSEWVREGRVPLQTLRADIDYCHRQAHTTYGVLGVKVWLFKGE 208          
BLAST of CX069677 vs. ExPASy Swiss-Prot
Match: RS3_MICAN (30S ribosomal protein S3 OS=Microcystis aeruginosa (strain NIES-843) GN=rpsC PE=3 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 1.131e-39
Identity = 85/198 (42.93%), Postives = 130/198 (65.66%), Query Frame = 3
Query:    3 SLWFAKPKNYCEGLQEDQKIRNFIKNYIKKNIRISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNVQKELNCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDE 596
            S W+A  K Y E LQED++IR     Y++KN+  +    GIA I I+++ D + + I+   P +++      IE+L++ +QK L    R+I I +  +       N++AE+IA QL+ RVSFR+ +++AI+  ++A+ KGI++Q++GRL+G EIAR EW+REGRVPL T+ A IDY   T  TIYG+LG+K+WIF  E
Sbjct:   20 SCWYADAKRYPELLQEDRRIRQ----YVEKNLANA----GIADIRIERKADQVDISIHTARPGVVVGRGGTGIEQLRLGLQKALGG-QRQIRINVIEVARVDADANLIAEYIAQQLERRVSFRRVVRQAIQRAQRAEVKGIKIQVSGRLNGAEIARTEWVREGRVPLHTLRADIDYSYKTASTIYGILGVKVWIFKGE 208          
BLAST of CX069677 vs. ExPASy Swiss-Prot
Match: RR3_PORYE (30S ribosomal protein S3, chloroplastic OS=Porphyra yezoensis GN=rps3 PE=3 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 1.131e-39
Identity = 80/198 (40.40%), Postives = 131/198 (66.16%), Query Frame = 3
Query:    3 SLWFAKPKNYCEGLQEDQKIRNFIKNYIKKNIRISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNVQKELNCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDE 596
            S WFA  K+Y   LQED KIR+FI + +            IA+IEI +++D ++++I    P ++L      IE L+ ++   L+  ++++ + +  I +P     ++AEFI  QL+ RV+FR+A+++A++  ++A+T+G+++Q++GRL+G EIAR+EW+REGRVPLQT+ A IDYC     T YGVLG+K+W+F  E
Sbjct:   20 SSWFANSKDYPVLLQEDHKIRSFIHSKLSN--------ASIAKIEINRKVDQVEILIATARPGIVLGKSGAGIESLRKSLSLILD-PSKQLRVNVVEIADPDSEATLVAEFITQQLEKRVAFRRAVRQAVQRAQRANTQGVKIQVSGRLNGAEIARSEWVREGRVPLQTLRADIDYCHRQAHTTYGVLGVKVWLFKGE 208          
BLAST of CX069677 vs. ExPASy Swiss-Prot
Match: RR3_MESVI (30S ribosomal protein S3, chloroplastic OS=Mesostigma viride GN=rps3 PE=3 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 2.519e-39
Identity = 84/197 (42.64%), Postives = 126/197 (63.96%), Query Frame = 3
Query:    9 WFAKPKNYCEGLQEDQKIRNFIKNYIKKNIRISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNVQKELNCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDEK 599
            WFAKP  Y   ++ED        NYI+K +       G+ARI+IQ++ D +++ IY   P L++    + IE L  ++Q +L    RK  I IT +  P     ++ EFIA +L+ R  FR+A+++A++  ++A  +GI++Q+AGRL+G EIAR+EW+REGRVPLQT+ A IDY     +TIYG++GIK+WIF  EK
Sbjct:   22 WFAKPSEYKFLVEED--------NYIRKYLNAKLANAGVARIDIQRKADQVEIEIYTARPGLVVGRTGKGIENLIRDLQDKLRN-KRKFRITITYLQEPDLESTLIGEFIAQRLQERKPFRRAIRQAVQRAKRAGVQGIKIQVAGRLNGAEIARSEWVREGRVPLQTLRADIDYSHCQAKTIYGIIGIKVWIFKGEK 209          
BLAST of CX069677 vs. ExPASy Swiss-Prot
Match: RS3_CYAP8 (30S ribosomal protein S3 OS=Cyanothece sp. (strain PCC 8801) GN=rpsC PE=3 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 1.633e-38
Identity = 82/198 (41.41%), Postives = 130/198 (65.66%), Query Frame = 3
Query:    3 SLWFAKPKNYCEGLQEDQKIRNFIKNYIKKNIRISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNVQKELNCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDE 596
            S W+A  K Y E LQED++IR     YI KN+  +    GI+ I I+++ D + + I+   P +++      IE+L++ +Q++L   NR+I I +  +        ++AE+I  QL+ RVSFR+ +++AI+  ++A+ KGI++Q++GRL+G EIAR EW+REGRVPL T+ A IDY   T +TIYG+LG+K+W+F  E
Sbjct:   20 SCWYADSKRYPETLQEDRQIRQ----YITKNLSNA----GISDIRIERKADQVDLAIHTARPGVVVGRGGSGIEQLRLGLQQDLGG-NRQIRINVIEVQRVDADAMLIAEYITQQLERRVSFRRVVRQAIQRAQRAEVKGIKIQVSGRLNGAEIARTEWVREGRVPLHTLRADIDYAYRTAQTIYGILGVKVWVFKGE 208          
The following BLAST results are available for this feature:
BLAST of CX069677 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RR3_STAPU1.424e-5050.5030S ribosomal protein S3, chloroplastic OS=Stauras... [more]
RR3_PSINU1.205e-4951.2430S ribosomal protein S3, chloroplastic OS=Psilotu... [more]
RR3_CHAGL1.924e-4745.0630S ribosomal protein S3, chloroplastic OS=Chaetos... [more]
RR3_CHLAT1.336e-4043.7230S ribosomal protein S3, chloroplastic OS=Chlorok... [more]
RR3_RHDSA2.975e-4042.2130S ribosomal protein S3, chloroplastic OS=Rhodomo... [more]
RR3_PORPU3.886e-4041.9230S ribosomal protein S3, chloroplastic OS=Porphyr... [more]
RS3_MICAN1.131e-3942.9330S ribosomal protein S3 OS=Microcystis aeruginosa... [more]
RR3_PORYE1.131e-3940.4030S ribosomal protein S3, chloroplastic OS=Porphyr... [more]
RR3_MESVI2.519e-3942.6430S ribosomal protein S3, chloroplastic OS=Mesosti... [more]
RS3_CYAP81.633e-3841.4130S ribosomal protein S3 OS=Cyanothece sp. (strain... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_12B02_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-12B02-D4-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069677 ID=CX069677; Name=CX069677; organism=Citrus sinensis; type=EST; length=821bp
ATTCTCTTTGGTTTGCAAAACCAAAAAACTATTGCGAGGGTCTACAAGAA
GATCAAAAAATACGAAACTTTATTAAGAATTATATAAAAAAAAATATCAG
AATATCTTCCGGTGTTGAGGGAATTGCACGGATAGAGATTCAAAAAAGAA
TTGATCTAATTCAAGTTATAATCTATATAGGGTTCCCAAAATTATTACTA
GAAAATAGACCGCGAAGAATTGAAGAATTACAGATGAATGTACAAAAAGA
ACTTAATTGTGTGAATCGAAAAATAAACATTGCTATTACACGAATTACAA
ATCCTTATGGACACCCCAATATTCTTGCCGAATTTATAGCCGGACAATTA
AAAAATAGAGTTTCTTTTCGAAAAGCAATGAAAAAAGCTATTGAATTAAC
GGAACAGGCCGATACAAAAGGAATTCAAGTACAAATTGCAGGGCGTCTTG
ACGGAAAAGAAATTGCGCGCGCCGAATGGATCAGAGAAGGTAGAGTTCCT
CTACAAACCATTGGAGCTAAAATTGATTATTGTTCCTATACGGTTCGAAC
TATCTACGGGGTATTGGGAATCAAAATTTGGATATTTGTAGACGAAAAAA
AATAAGAGTTTACGGGTCTTTAGAGCCCCCCCATTAATGGAAATAAACCA
AACAAAGAACGAGCTCTTTTTATCTTCAATCAAAACAAAAATGAGAAATT
CCGCAATTCTATAGGGTTGAATAAAAATTCGATTGATTTTTTTTTTTTTA
TATAATTGCTATGCTTAGTGTGCGACTCGTTGGTTTTTTTTAGGGCTAGG
ATTCCAAAAAATGGACCGTCC
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