CX069676

Overview
NameCX069676
Unique NameCX069676
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length877
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1652 contig Csv1_Contig1652:767..1643. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX069676 vs. ExPASy Swiss-Prot
Match: RR8_SPIOL (30S ribosomal protein S8, chloroplastic OS=Spinacia oleracea GN=rps8 PE=1 SV=3)

HSP 1 Score: 218.394 bits (555), Expect = 4.291e-56
Identity = 112/136 (82.35%), Postives = 118/136 (86.76%), Query Frame = -2 
Query:   70 MGKDTIADIITSIRNADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKNKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 477
            MGKDTIADIIT IRNADMNRKGTVRI STNITEN+VKILLREGFIENARK    +  K FLVLTLRHRRN+KGPY    +LKR+SRPGLRIY NY+RIPRIL GMGI ILSTSRGIMTDR ARLE IGGEILCYIW
Sbjct:    1 MGKDTIADIITCIRNADMNRKGTVRIVSTNITENIVKILLREGFIENARK--HQERNKYFLVLTLRHRRNKKGPYLNTFHLKRVSRPGLRIYSNYQRIPRILGGMGIAILSTSRGIMTDREARLEGIGGEILCYIW 134
[Close]
BLAST of CX069676 vs. ExPASy Swiss-Prot
Match: RR8_DAUCA (30S ribosomal protein S8, chloroplastic OS=Daucus carota GN=rps8 PE=3 SV=1)

HSP 1 Score: 218.394 bits (555), Expect = 4.291e-56
Identity = 112/136 (82.35%), Postives = 120/136 (88.24%), Query Frame = -2 
Query:   70 MGKDTIADIITSIRNADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKNKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 477
            MG+D IADIITSIRNADM+RK  VRIASTNITEN+VKILLREGFIEN RK    + KK+FLVLTLRHRRNRK  YR  LNLKRISRPGLRIY NY+RIPRIL GMGIVI+STSRGIMTDR ARLERIGGE+LCYIW
Sbjct:    1 MGRDIIADIITSIRNADMDRKRAVRIASTNITENIVKILLREGFIENVRK--HKETKKDFLVLTLRHRRNRKRSYRNFLNLKRISRPGLRIYSNYQRIPRILGGMGIVIISTSRGIMTDREARLERIGGEVLCYIW 134
[Close]
BLAST of CX069676 vs. ExPASy Swiss-Prot
Match: RR8_ATRBE (30S ribosomal protein S8, chloroplastic OS=Atropa belladonna GN=rps8 PE=3 SV=1)

HSP 1 Score: 218.394 bits (555), Expect = 4.291e-56
Identity = 113/136 (83.09%), Postives = 121/136 (88.97%), Query Frame = -2 
Query:   70 MGKDTIADIITSIRNADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKNKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 477
            MG+DTIA+IITSIRNADM+RK  VRIASTNITEN+V+ILLREGFIEN RK    +N K FLVLTLRHRRN+K PYR ILNLKRISRPGLRIY NY+RIPRIL GMGIVILSTSRGIMTDR ARLE IGGEILCYIW
Sbjct:    1 MGRDTIAEIITSIRNADMDRKRVVRIASTNITENIVQILLREGFIENVRK--HQENNKYFLVLTLRHRRNKKRPYRNILNLKRISRPGLRIYSNYQRIPRILGGMGIVILSTSRGIMTDREARLEGIGGEILCYIW 134
[Close]
BLAST of CX069676 vs. ExPASy Swiss-Prot
Match: RR8_TOBAC (30S ribosomal protein S8, chloroplastic OS=Nicotiana tabacum GN=rps8 PE=3 SV=1)

HSP 1 Score: 217.238 bits (552), Expect = 9.558e-56
Identity = 113/136 (83.09%), Postives = 120/136 (88.24%), Query Frame = -2 
Query:   70 MGKDTIADIITSIRNADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKNKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 477
            MG+DTIA+IITSIRNADM+RK  VRIASTNITEN+V+ILLREGFIEN RK    +  K FLVLTLRHRRNRK PYR ILNLKRISRPGLRIY NY+RIPRIL GMGIVILSTSRGIMTDR ARLE IGGEILCYIW
Sbjct:    1 MGRDTIAEIITSIRNADMDRKRVVRIASTNITENIVQILLREGFIENVRK--HREKNKYFLVLTLRHRRNRKRPYRNILNLKRISRPGLRIYSNYQRIPRILGGMGIVILSTSRGIMTDREARLEGIGGEILCYIW 134
[Close]
BLAST of CX069676 vs. ExPASy Swiss-Prot
Match: RR8_NICTO (30S ribosomal protein S8, chloroplastic OS=Nicotiana tomentosiformis GN=rps8 PE=3 SV=1)

HSP 1 Score: 217.238 bits (552), Expect = 9.558e-56
Identity = 113/136 (83.09%), Postives = 121/136 (88.97%), Query Frame = -2 
Query:   70 MGKDTIADIITSIRNADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKNKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 477
            MG+DTIA+IITSIRNADM+RK  VRIASTNITEN+V+ILLREGFIEN RK    +N K FLVLTLR+RRNRK PYR ILNLKRISRPGLRIY NY+RIPRIL GMGIVILSTSRGIMTDR ARLE IGGEILCYIW
Sbjct:    1 MGRDTIAEIITSIRNADMDRKRVVRIASTNITENIVQILLREGFIENVRK--HRENNKYFLVLTLRYRRNRKRPYRNILNLKRISRPGLRIYSNYQRIPRILGGMGIVILSTSRGIMTDREARLEGIGGEILCYIW 134
[Close]
BLAST of CX069676 vs. ExPASy Swiss-Prot
Match: RR8_NICSY (30S ribosomal protein S8, chloroplastic OS=Nicotiana sylvestris GN=rps8 PE=3 SV=1)

HSP 1 Score: 217.238 bits (552), Expect = 9.558e-56
Identity = 113/136 (83.09%), Postives = 120/136 (88.24%), Query Frame = -2 
Query:   70 MGKDTIADIITSIRNADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKNKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 477
            MG+DTIA+IITSIRNADM+RK  VRIASTNITEN+V+ILLREGFIEN RK    +  K FLVLTLRHRRNRK PYR ILNLKRISRPGLRIY NY+RIPRIL GMGIVILSTSRGIMTDR ARLE IGGEILCYIW
Sbjct:    1 MGRDTIAEIITSIRNADMDRKRVVRIASTNITENIVQILLREGFIENVRK--HREKNKYFLVLTLRHRRNRKRPYRNILNLKRISRPGLRIYSNYQRIPRILGGMGIVILSTSRGIMTDREARLEGIGGEILCYIW 134
[Close]
BLAST of CX069676 vs. ExPASy Swiss-Prot
Match: RR8_HELAN (30S ribosomal protein S8, chloroplastic OS=Helianthus annuus GN=rps8 PE=3 SV=1)

HSP 1 Score: 217.238 bits (552), Expect = 9.558e-56
Identity = 110/136 (80.88%), Postives = 120/136 (88.24%), Query Frame = -2 
Query:   70 MGKDTIADIITSIRNADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKNKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 477
            M  DTIADIITSIRNADM RK  VR+ASTNI++++VKILLREGFIEN RK    +N K+FLVLTLRHRRNRK PYR +LNLKRISRPGLRIY NY+RIPRIL GMG+VILSTSRGIMTDR ARLERIGGEILCYIW
Sbjct:    1 MSSDTIADIITSIRNADMYRKSVVRVASTNISQSIVKILLREGFIENVRK--HRENNKDFLVLTLRHRRNRKRPYRNLLNLKRISRPGLRIYSNYQRIPRILGGMGVVILSTSRGIMTDREARLERIGGEILCYIW 134
[Close]
BLAST of CX069676 vs. ExPASy Swiss-Prot
Match: RR8_AETCO (30S ribosomal protein S8, chloroplastic OS=Aethionema cordifolium GN=rps8 PE=3 SV=1)

HSP 1 Score: 216.083 bits (549), Expect = 2.129e-55
Identity = 110/136 (80.88%), Postives = 121/136 (88.97%), Query Frame = -2 
Query:   70 MGKDTIADIITSIRNADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKNKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 477
            MGKDTIADIITSIRNADMNRKGTVRI STNITE++VKILLREGFIEN RK    +N + FL+LTLRHRRN+K  Y+ ILNLKRISRPGLRIY N +RIPRIL G+GIVILSTSRGIMTDR ARL+R+GGEILCYIW
Sbjct:    1 MGKDTIADIITSIRNADMNRKGTVRIGSTNITESIVKILLREGFIENVRK--HRENNQYFLILTLRHRRNKKESYKTILNLKRISRPGLRIYSNSQRIPRILGGIGIVILSTSRGIMTDREARLKRVGGEILCYIW 134
[Close]
BLAST of CX069676 vs. ExPASy Swiss-Prot
Match: RR8_PIPCE (30S ribosomal protein S8, chloroplastic OS=Piper cenocladum GN=rps8 PE=3 SV=1)

HSP 1 Score: 215.698 bits (548), Expect = 2.781e-55
Identity = 110/136 (80.88%), Postives = 121/136 (88.97%), Query Frame = -2 
Query:   70 MGKDTIADIITSIRNADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKNKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 477
            MG+DTIADIITSIRNA M++KGTVRIASTN+TEN+V+ILLREGFIEN RK    +N+K FLV TLRHRRNRKG  R ILNLKRISRPGLRIY NY++IPRIL GMGIVILSTSRG+MTDR ARLE IGGEILCYIW
Sbjct:    1 MGRDTIADIITSIRNAHMDKKGTVRIASTNMTENIVRILLREGFIENVRK--HRENQKNFLVSTLRHRRNRKGTSRTILNLKRISRPGLRIYSNYQKIPRILGGMGIVILSTSRGVMTDREARLEGIGGEILCYIW 134
[Close]
BLAST of CX069676 vs. ExPASy Swiss-Prot
Match: RR8_NASOF (30S ribosomal protein S8, chloroplastic OS=Nasturtium officinale GN=rps8 PE=3 SV=1)

HSP 1 Score: 214.927 bits (546), Expect = 4.744e-55
Identity = 110/136 (80.88%), Postives = 121/136 (88.97%), Query Frame = -2 
Query:   70 MGKDTIADIITSIRNADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKNKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 477
            MGKDTIADIITSIRNADMNRKGTVRI STNITE++VKILLREGFIEN RK    +N + FL+LTLRHRRN+K  Y+ ILNLKRISRPGLRIY N +RIPRIL G+GIVILSTS+GIMTDR ARL+RIGGEILCYIW
Sbjct:    1 MGKDTIADIITSIRNADMNRKGTVRIGSTNITESIVKILLREGFIENVRK--HRENNQYFLILTLRHRRNKKESYKTILNLKRISRPGLRIYSNSQRIPRILGGIGIVILSTSQGIMTDREARLKRIGGEILCYIW 134
The following BLAST results are available for this feature:
BLAST of CX069676 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RR8_SPIOL4.291e-5682.3530S ribosomal protein S8, chloroplastic OS=Spinaci... [more]
RR8_DAUCA4.291e-5682.3530S ribosomal protein S8, chloroplastic OS=Daucus ... [more]
RR8_ATRBE4.291e-5683.0930S ribosomal protein S8, chloroplastic OS=Atropa ... [more]
RR8_TOBAC9.558e-5683.0930S ribosomal protein S8, chloroplastic OS=Nicotia... [more]
RR8_NICTO9.558e-5683.0930S ribosomal protein S8, chloroplastic OS=Nicotia... [more]
RR8_NICSY9.558e-5683.0930S ribosomal protein S8, chloroplastic OS=Nicotia... [more]
RR8_HELAN9.558e-5680.8830S ribosomal protein S8, chloroplastic OS=Heliant... [more]
RR8_AETCO2.129e-5580.8830S ribosomal protein S8, chloroplastic OS=Aethion... [more]
RR8_PIPCE2.781e-5580.8830S ribosomal protein S8, chloroplastic OS=Piper c... [more]
RR8_NASOF4.744e-5580.8830S ribosomal protein S8, chloroplastic OS=Nasturt... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_12B02_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-12B02-D4-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069676 ID=CX069676; Name=CX069676; organism=Citrus sinensis; type=EST; length=877bp
AATCCTCCCTTTTTTTTTCTCACAACATAAAAGTAAGCTCCAAATACAAT
TCGGATAGCAGAATAATTACCATATATAACACAAAATTTCTCCACCGATT
CTTTCCAGTCGAGCCGCTCGGTCTGTCATTATACCCCGAGAAGTAGAGAG
AATTACAATCCCCATCCCATCTAAAATTCTAGGAATTCGTCGATAGTTAA
AATAGATTCGTAGACCGGGTCGACTGATTCGTTTTAAATTTAAAATGGGT
CTATACGGCCCTTTCCTATTCCTTCGATGTCGTAGGGTTAAAACCAAAAA
CTCTTTTTTGTTTTTGTTTTCCACGAGTTTCCTTGCGTTTTCGATAAAAC
CCTCTCGCAAAAGGATTTTAACAACGTTTTCGGTGATGTTAGTAGATGCT
ATTCGAACCGTTCCCTTTCTATTCATGTCAGCATTTCGTATAGAAGTTAT
TATGTCAGCAATAGTGTCCTTGCCCATGATAAACTGAAAATTTTGTTGCT
TCCAAATTTTGATATAATCAACATGTTCTTTTTTTTATGAAAATTATTAA
AAGTATATGCGTGAGACATACTCTACTAAATTTTGATTTATCTATTTTAT
TTTCATACTATCACTATATCGCGGTCCCCTCTTATAATACTTCAGGTGCT
AATGAAACTATTTTAGTAAAATTCAACTGTCTCAATTCCCGGGCGATCGC
ACCAAAAACTCGAGTTCCCTTTGGATTTCCTTCGTGATCAATGACAACTG
CAGCATTGTCATCGTACCGTATTATCATACCGTTATCACGTCTGAGTTCT
TTACAAGTACGTACAATTACAGCTCTGATCACTTCTGATCTTTCTAGAGG
CGTATTGGGTACTGCTTCCTTGATCAC
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