CX069676

Overview
NameCX069676
Unique NameCX069676
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length877
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1652 contig Csv1_Contig1652:767..1643. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX069676 vs. ExPASy Swiss-Prot
Match: RR8_CRUWA (30S ribosomal protein S8, chloroplastic OS=Crucihimalaya wallichii GN=rps8 PE=3 SV=1)

HSP 1 Score: 214.927 bits (546), Expect = 4.744e-55
Identity = 110/136 (80.88%), Postives = 121/136 (88.97%), Query Frame = -2 
Query:   70 MGKDTIADIITSIRNADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKNKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 477
            MGKDTIADIITSIRNADMNRKGTVRI STNITE++VKILLREGFIEN RK    +N + FL+LTLRHRRN+K  Y+ ILNLKRISRPGLRIY N +RIPRIL G+GIVILSTS+GIMTDR ARL+RIGGEILCYIW
Sbjct:    1 MGKDTIADIITSIRNADMNRKGTVRIGSTNITESIVKILLREGFIENVRK--HRENNQYFLILTLRHRRNKKESYKTILNLKRISRPGLRIYSNSQRIPRILGGIGIVILSTSQGIMTDREARLKRIGGEILCYIW 134
[Close]
BLAST of CX069676 vs. ExPASy Swiss-Prot
Match: RR8_BARVE (30S ribosomal protein S8, chloroplastic OS=Barbarea verna GN=rps8 PE=3 SV=1)

HSP 1 Score: 214.927 bits (546), Expect = 4.744e-55
Identity = 110/136 (80.88%), Postives = 121/136 (88.97%), Query Frame = -2 
Query:   70 MGKDTIADIITSIRNADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKNKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 477
            MGKDTIADIITSIRNADMNRKGTVRI STNITE++VKILLREGFIEN RK    +N + FL+LTLRHRRN+K  Y+ ILNLKRISRPGLRIY N +RIPRIL G+GIVILSTS+GIMTDR ARL+RIGGEILCYIW
Sbjct:    1 MGKDTIADIITSIRNADMNRKGTVRIGSTNITESIVKILLREGFIENVRK--HRENNQYFLILTLRHRRNKKESYKTILNLKRISRPGLRIYSNSQRIPRILGGIGIVILSTSQGIMTDREARLKRIGGEILCYIW 134
[Close]
BLAST of CX069676 vs. ExPASy Swiss-Prot
Match: RR8_ARATH (30S ribosomal protein S8, chloroplastic OS=Arabidopsis thaliana GN=rps8 PE=3 SV=1)

HSP 1 Score: 214.927 bits (546), Expect = 4.744e-55
Identity = 110/136 (80.88%), Postives = 121/136 (88.97%), Query Frame = -2 
Query:   70 MGKDTIADIITSIRNADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKNKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 477
            MGKDTIADIITSIRNADMNRKGTVRI STNITE++VKILLREGFIEN RK    +N + FL+LTLRHRRN+K  Y+ ILNLKRISRPGLRIY N +RIPRIL G+GIVILSTS+GIMTDR ARL+RIGGEILCYIW
Sbjct:    1 MGKDTIADIITSIRNADMNRKGTVRIGSTNITESIVKILLREGFIENVRK--HRENNQYFLILTLRHRRNKKESYKTILNLKRISRPGLRIYSNSQRIPRILGGIGIVILSTSQGIMTDREARLKRIGGEILCYIW 134
[Close]
BLAST of CX069676 vs. ExPASy Swiss-Prot
Match: RR8_POPTR (30S ribosomal protein S8, chloroplastic OS=Populus trichocarpa GN=rps8 PE=3 SV=1)

HSP 1 Score: 214.542 bits (545), Expect = 6.196e-55
Identity = 110/136 (80.88%), Postives = 118/136 (86.76%), Query Frame = -2 
Query:   70 MGKDTIADIITSIRNADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKNKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 477
            MG+DT+ADIITSIRNADM+RKGTVRI STNITEN++KILLREGFIEN RK    +    F  LTLRHRRNRKGP R  LNLKRISRPGLRIY NY++IPRIL GMGIVILSTSRGIMTDR ARLERIGGEILCYIW
Sbjct:    1 MGRDTLADIITSIRNADMDRKGTVRIPSTNITENIIKILLREGFIENVRK--HQEGNFFFFALTLRHRRNRKGPCRTSLNLKRISRPGLRIYSNYQQIPRILGGMGIVILSTSRGIMTDREARLERIGGEILCYIW 134
[Close]
BLAST of CX069676 vs. ExPASy Swiss-Prot
Match: RR8_POPAL (30S ribosomal protein S8, chloroplastic OS=Populus alba GN=rps8 PE=3 SV=1)

HSP 1 Score: 214.542 bits (545), Expect = 6.196e-55
Identity = 110/136 (80.88%), Postives = 118/136 (86.76%), Query Frame = -2 
Query:   70 MGKDTIADIITSIRNADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKNKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 477
            MG+DT+ADIITSIRNADM+RKGTVRI STNITEN++KILLREGFIEN RK    +    F  LTLRHRRNRKGP R  LNLKRISRPGLRIY NY++IPRIL GMGIVILSTSRGIMTDR ARLERIGGEILCYIW
Sbjct:    1 MGRDTLADIITSIRNADMDRKGTVRIPSTNITENIIKILLREGFIENVRK--HQEGNFFFFALTLRHRRNRKGPCRTSLNLKRISRPGLRIYSNYQQIPRILGGMGIVILSTSRGIMTDREARLERIGGEILCYIW 134
[Close]
BLAST of CX069676 vs. ExPASy Swiss-Prot
Match: RR8_LACSA (30S ribosomal protein S8, chloroplastic OS=Lactuca sativa GN=rps8 PE=3 SV=1)

HSP 1 Score: 214.542 bits (545), Expect = 6.196e-55
Identity = 110/136 (80.88%), Postives = 119/136 (87.50%), Query Frame = -2 
Query:   70 MGKDTIADIITSIRNADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKNKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 477
            MG DTIADIITSIRNADM RK  VR+ASTNI++++VKILLREGFIEN RK    +N K FLVLTLRHRRNRK  YR +LNLKRISRPGLRIY NY+RIPRIL GMGIVILSTS+GIMTDR ARLERIGGEILCYIW
Sbjct:    1 MGSDTIADIITSIRNADMYRKSVVRVASTNISQSIVKILLREGFIENVRK--HRENNKSFLVLTLRHRRNRKRTYRNLLNLKRISRPGLRIYSNYQRIPRILGGMGIVILSTSQGIMTDREARLERIGGEILCYIW 134
[Close]
BLAST of CX069676 vs. ExPASy Swiss-Prot
Match: RR8_ARAHI (30S ribosomal protein S8, chloroplastic OS=Arabis hirsuta GN=rps8 PE=3 SV=1)

HSP 1 Score: 214.542 bits (545), Expect = 6.196e-55
Identity = 110/136 (80.88%), Postives = 121/136 (88.97%), Query Frame = -2 
Query:   70 MGKDTIADIITSIRNADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKNKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 477
            MGKDTIADIITSIRNADMNRKGTVRI STNITE++VKILLREGFIEN RK    +N + FL+LTLRHRRN+K  Y+ ILNLKRISRPGLRIY N +RIPRIL G+GIVILSTS+GIMTDR ARL+RIGGEILCYIW
Sbjct:    1 MGKDTIADIITSIRNADMNRKGTVRIESTNITESIVKILLREGFIENVRK--HRENNQYFLILTLRHRRNKKESYKTILNLKRISRPGLRIYSNSQRIPRILGGIGIVILSTSQGIMTDREARLKRIGGEILCYIW 134
[Close]
BLAST of CX069676 vs. ExPASy Swiss-Prot
Match: RR8_NANDO (30S ribosomal protein S8, chloroplastic OS=Nandina domestica GN=rps8 PE=3 SV=1)

HSP 1 Score: 214.157 bits (544), Expect = 8.092e-55
Identity = 113/136 (83.09%), Postives = 120/136 (88.24%), Query Frame = -2 
Query:   70 MGKDTIADIITSIRNADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKNKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 477
            MG+DTIADIITSIRNADM++KGTVRIASTNITE +VKILLREGFIEN RK    +N + FLV TLRHRRNRKGPYR IL  KRISRPGLRIY NY+RIPRIL GMGIVILSTSRGIMTDR ARLE IGGEILCYIW
Sbjct:    1 MGRDTIADIITSIRNADMDKKGTVRIASTNITETIVKILLREGFIENVRK--HRENDQFFLVSTLRHRRNRKGPYRTIL--KRISRPGLRIYSNYQRIPRILGGMGIVILSTSRGIMTDREARLEGIGGEILCYIW 132
[Close]
BLAST of CX069676 vs. ExPASy Swiss-Prot
Match: RR8_COFAR (30S ribosomal protein S8, chloroplastic OS=Coffea arabica GN=rps8 PE=3 SV=1)

HSP 1 Score: 214.157 bits (544), Expect = 8.092e-55
Identity = 110/136 (80.88%), Postives = 119/136 (87.50%), Query Frame = -2 
Query:   70 MGKDTIADIITSIRNADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKNKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 477
            MG+DT+A+IITSIRNADM++K  VRI STNITEN+VKILLREGFIENARK    +N K FLVLTLRHRRNRKGP+R I NLKRISRPGLRIY N +RIPRIL GMGIVI STSRGIMTDR ARLE IGGEILCYIW
Sbjct:    1 MGRDTVAEIITSIRNADMDKKRVVRITSTNITENIVKILLREGFIENARK--HRENNKYFLVLTLRHRRNRKGPHRNIFNLKRISRPGLRIYANSQRIPRILGGMGIVIFSTSRGIMTDREARLEGIGGEILCYIW 134
[Close]
BLAST of CX069676 vs. ExPASy Swiss-Prot
Match: RR8_SOYBN (30S ribosomal protein S8, chloroplastic OS=Glycine max GN=rps8 PE=3 SV=1)

HSP 1 Score: 213.772 bits (543), Expect = 1.057e-54
Identity = 109/136 (80.15%), Postives = 118/136 (86.76%), Query Frame = -2 
Query:   70 MGKDTIADIITSIRNADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKNKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 477
            MGKDTIADIIT IRNADMN+KG V+I  TNITEN+VKILLREGF+EN RK    +N K FLVLTLR+RRNRKG Y+  LNLKRIS PGLRIY NY+RIPRIL GMGIVILSTSRGIMTDR ARLERIGGE+LCYIW
Sbjct:    1 MGKDTIADIITYIRNADMNKKGMVQIPFTNITENIVKILLREGFVENVRK--HRENDKYFLVLTLRYRRNRKGSYKSFLNLKRISTPGLRIYSNYQRIPRILGGMGIVILSTSRGIMTDREARLERIGGEVLCYIW 134
The following BLAST results are available for this feature:
BLAST of CX069676 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RR8_CRUWA4.744e-5580.8830S ribosomal protein S8, chloroplastic OS=Crucihi... [more]
RR8_BARVE4.744e-5580.8830S ribosomal protein S8, chloroplastic OS=Barbare... [more]
RR8_ARATH4.744e-5580.8830S ribosomal protein S8, chloroplastic OS=Arabido... [more]
RR8_POPTR6.196e-5580.8830S ribosomal protein S8, chloroplastic OS=Populus... [more]
RR8_POPAL6.196e-5580.8830S ribosomal protein S8, chloroplastic OS=Populus... [more]
RR8_LACSA6.196e-5580.8830S ribosomal protein S8, chloroplastic OS=Lactuca... [more]
RR8_ARAHI6.196e-5580.8830S ribosomal protein S8, chloroplastic OS=Arabis ... [more]
RR8_NANDO8.092e-5583.0930S ribosomal protein S8, chloroplastic OS=Nandina... [more]
RR8_COFAR8.092e-5580.8830S ribosomal protein S8, chloroplastic OS=Coffea ... [more]
RR8_SOYBN1.057e-5480.1530S ribosomal protein S8, chloroplastic OS=Glycine... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS08_12B02_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-12B02-D4-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069676 ID=CX069676; Name=CX069676; organism=Citrus sinensis; type=EST; length=877bp
AATCCTCCCTTTTTTTTTCTCACAACATAAAAGTAAGCTCCAAATACAAT
TCGGATAGCAGAATAATTACCATATATAACACAAAATTTCTCCACCGATT
CTTTCCAGTCGAGCCGCTCGGTCTGTCATTATACCCCGAGAAGTAGAGAG
AATTACAATCCCCATCCCATCTAAAATTCTAGGAATTCGTCGATAGTTAA
AATAGATTCGTAGACCGGGTCGACTGATTCGTTTTAAATTTAAAATGGGT
CTATACGGCCCTTTCCTATTCCTTCGATGTCGTAGGGTTAAAACCAAAAA
CTCTTTTTTGTTTTTGTTTTCCACGAGTTTCCTTGCGTTTTCGATAAAAC
CCTCTCGCAAAAGGATTTTAACAACGTTTTCGGTGATGTTAGTAGATGCT
ATTCGAACCGTTCCCTTTCTATTCATGTCAGCATTTCGTATAGAAGTTAT
TATGTCAGCAATAGTGTCCTTGCCCATGATAAACTGAAAATTTTGTTGCT
TCCAAATTTTGATATAATCAACATGTTCTTTTTTTTATGAAAATTATTAA
AAGTATATGCGTGAGACATACTCTACTAAATTTTGATTTATCTATTTTAT
TTTCATACTATCACTATATCGCGGTCCCCTCTTATAATACTTCAGGTGCT
AATGAAACTATTTTAGTAAAATTCAACTGTCTCAATTCCCGGGCGATCGC
ACCAAAAACTCGAGTTCCCTTTGGATTTCCTTCGTGATCAATGACAACTG
CAGCATTGTCATCGTACCGTATTATCATACCGTTATCACGTCTGAGTTCT
TTACAAGTACGTACAATTACAGCTCTGATCACTTCTGATCTTTCTAGAGG
CGTATTGGGTACTGCTTCCTTGATCAC
back to top