CX069676

Overview
NameCX069676
Unique NameCX069676
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length877
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1652 contig Csv1_Contig1652:767..1643. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX069676 vs. ExPASy Swiss-Prot
Match: RR8_IPOPU (30S ribosomal protein S8, chloroplastic OS=Ipomoea purpurea GN=rps8 PE=3 SV=1)

HSP 1 Score: 213.772 bits (543), Expect = 1.057e-54
Identity = 109/136 (80.15%), Postives = 118/136 (86.76%), Query Frame = -2
Query:   70 MGKDTIADIITSIRNADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKNKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 477
            MG+DTIA+IITSIRNADM+RK  VRIASTNITEN+V+ILLREGFIEN RK    +  K F VLTLRHRRNRK PYR I NLKRISRPGLRIY NY+RIP+IL GMG+VILSTSRGIMTDR ARLE IGGEILCYIW
Sbjct:    1 MGRDTIAEIITSIRNADMDRKRVVRIASTNITENIVRILLREGFIENVRK--HREKNKNFFVLTLRHRRNRKRPYRNIFNLKRISRPGLRIYSNYQRIPKILGGMGVVILSTSRGIMTDREARLEGIGGEILCYIW 134          
BLAST of CX069676 vs. ExPASy Swiss-Prot
Match: RR8_OLIPU (30S ribosomal protein S8, chloroplastic OS=Olimarabidopsis pumila GN=rps8 PE=3 SV=1)

HSP 1 Score: 213.001 bits (541), Expect = 1.803e-54
Identity = 109/136 (80.15%), Postives = 121/136 (88.97%), Query Frame = -2
Query:   70 MGKDTIADIITSIRNADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKNKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 477
            MGKDTIADIITSIRNADMNRKGTVRI STNITE++VKILLREGFIEN RK    ++ + FL+LTLRHRRN+K  Y+ ILNLKRISRPGLRIY N +RIPRIL G+GIVILSTS+GIMTDR ARL+RIGGEILCYIW
Sbjct:    1 MGKDTIADIITSIRNADMNRKGTVRIGSTNITESIVKILLREGFIENVRK--HRESNQYFLILTLRHRRNKKESYKTILNLKRISRPGLRIYSNSQRIPRILGGIGIVILSTSQGIMTDREARLKRIGGEILCYIW 134          
BLAST of CX069676 vs. ExPASy Swiss-Prot
Match: RR8_LOBMA (30S ribosomal protein S8, chloroplastic OS=Lobularia maritima GN=rps8 PE=3 SV=1)

HSP 1 Score: 213.001 bits (541), Expect = 1.803e-54
Identity = 109/136 (80.15%), Postives = 121/136 (88.97%), Query Frame = -2
Query:   70 MGKDTIADIITSIRNADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKNKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 477
            MGKDTIADIITSIRNADMNRKGTVRI STNITE++VKILLREGFIEN RK    +N + FL+LTLRHRRN+K  ++ ILNLKRISRPGLRIY N +RIPRIL G+GIVILSTS+GIMTDR ARL+RIGGEILCYIW
Sbjct:    1 MGKDTIADIITSIRNADMNRKGTVRIGSTNITESIVKILLREGFIENVRK--HRENNQYFLILTLRHRRNKKESHKTILNLKRISRPGLRIYSNSQRIPRILGGIGIVILSTSQGIMTDREARLKRIGGEILCYIW 134          
BLAST of CX069676 vs. ExPASy Swiss-Prot
Match: RR8_CAPBU (30S ribosomal protein S8, chloroplastic OS=Capsella bursa-pastoris GN=rps8 PE=3 SV=1)

HSP 1 Score: 213.001 bits (541), Expect = 1.803e-54
Identity = 109/136 (80.15%), Postives = 121/136 (88.97%), Query Frame = -2
Query:   70 MGKDTIADIITSIRNADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKNKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 477
            MGKDTIADIITSIRNADMNRKGTVRI STNITE++VKILLREGFIEN RK    ++ + FL+LTLRHRRN+K  Y+ ILNLKRISRPGLRIY N +RIPRIL G+GIVILSTS+GIMTDR ARL+RIGGEILCYIW
Sbjct:    1 MGKDTIADIITSIRNADMNRKGTVRIGSTNITESIVKILLREGFIENVRK--HRESNQYFLILTLRHRRNKKESYKTILNLKRISRPGLRIYSNSQRIPRILGGIGIVILSTSQGIMTDREARLKRIGGEILCYIW 134          
BLAST of CX069676 vs. ExPASy Swiss-Prot
Match: RR8_BUXMI (30S ribosomal protein S8, chloroplastic OS=Buxus microphylla GN=rps8 PE=3 SV=1)

HSP 1 Score: 213.001 bits (541), Expect = 1.803e-54
Identity = 112/136 (82.35%), Postives = 121/136 (88.97%), Query Frame = -2
Query:   70 MGKDTIADIITSIRNADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKNKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 477
            MG+DTIA+IITSIRNADM++KGTVRIASTNITEN+VKILLREGFIEN RK    ++ K FLV TLRHRR+RKGPYR IL  KRISRPGLRIY NY+RIPRIL GMGIVILSTSRGIMTDR ARLE IGGEILCYIW
Sbjct:    1 MGRDTIANIITSIRNADMDKKGTVRIASTNITENIVKILLREGFIENVRK--HRESNKYFLVSTLRHRRSRKGPYRTIL--KRISRPGLRIYSNYQRIPRILGGMGIVILSTSRGIMTDREARLEGIGGEILCYIW 132          
BLAST of CX069676 vs. ExPASy Swiss-Prot
Match: RR8_AETGR (30S ribosomal protein S8, chloroplastic OS=Aethionema grandiflora GN=rps8 PE=3 SV=1)

HSP 1 Score: 212.616 bits (540), Expect = 2.354e-54
Identity = 108/136 (79.41%), Postives = 120/136 (88.24%), Query Frame = -2
Query:   70 MGKDTIADIITSIRNADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKNKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 477
            MGKDTIADIITSIRNADMNRKGTVRI STNITE++VKILLREGFIEN RK    +N ++FL+LTLRHRRN+K  Y+ I NLKRISRPGLRIY N +RI RIL G+GIVILSTSRGIMTDR ARL+R+GGEILCYIW
Sbjct:    1 MGKDTIADIITSIRNADMNRKGTVRIGSTNITESIVKILLREGFIENVRK--HRENTQDFLILTLRHRRNKKESYKTIFNLKRISRPGLRIYSNSQRITRILGGIGIVILSTSRGIMTDREARLKRVGGEILCYIW 134          
BLAST of CX069676 vs. ExPASy Swiss-Prot
Match: RR8_LOTJA (30S ribosomal protein S8, chloroplastic OS=Lotus japonicus GN=rps8 PE=3 SV=1)

HSP 1 Score: 211.846 bits (538), Expect = 4.016e-54
Identity = 108/136 (79.41%), Postives = 118/136 (86.76%), Query Frame = -2
Query:   70 MGKDTIADIITSIRNADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKNKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 477
            MGKDTIADIITSIRNADMNRK TV+I  TNITEN VKILLREGFIEN RK    ++ K FLVLTLR+RRN KG Y+  LNLKRIS PGLRIY+NY++IPRIL GMGIVILSTSRGIMTDR ARLE+IGGE+LCYIW
Sbjct:    1 MGKDTIADIITSIRNADMNRKRTVQIPFTNITENTVKILLREGFIENVRK--HRESDKSFLVLTLRYRRNTKGSYKTFLNLKRISTPGLRIYYNYQKIPRILGGMGIVILSTSRGIMTDREARLEKIGGEVLCYIW 134          
BLAST of CX069676 vs. ExPASy Swiss-Prot
Match: RR8_OENEH (30S ribosomal protein S8, chloroplastic OS=Oenothera elata subsp. hookeri GN=rps8 PE=3 SV=2)

HSP 1 Score: 210.69 bits (535), Expect = 8.946e-54
Identity = 111/140 (79.29%), Postives = 118/140 (84.29%), Query Frame = -2
Query:   70 MGKDTIADIITSIRNADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKNKKEFLVLTLRHRRNRKGPYRPI----LNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 477
            MG+DTIADIITSIRN DMNRKGTVRI STN+ E +VKILLREGFIEN RK    +NKK FLVLTLRHRRNRKGP        LNLKRISRPGLR+Y NY++IPRIL GMGIVILSTSRGIMTDR ARLE IGGEILCYIW
Sbjct:    1 MGRDTIADIITSIRNVDMNRKGTVRIESTNMAEKIVKILLREGFIENVRK--HQENKKSFLVLTLRHRRNRKGPSPSRTFLNLNLKRISRPGLRVYSNYQKIPRILGGMGIVILSTSRGIMTDREARLEGIGGEILCYIW 138          
BLAST of CX069676 vs. ExPASy Swiss-Prot
Match: RR8_LIRTU (30S ribosomal protein S8, chloroplastic OS=Liriodendron tulipifera GN=rps8 PE=3 SV=1)

HSP 1 Score: 209.534 bits (532), Expect = 1.993e-53
Identity = 110/136 (80.88%), Postives = 119/136 (87.50%), Query Frame = -2
Query:   70 MGKDTIADIITSIRNADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKNKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 477
            MG+DTIADI+TSIRNADM++KGTVRIASTN+ E+VVKILLREGFIEN RK    +N K FLV TLRHRRNRKG YR IL  KRISRPGLRIY NY+RIPRIL GMGIVILSTSRGIMTDR ARLE IGGE+LCYIW
Sbjct:    1 MGRDTIADILTSIRNADMDKKGTVRIASTNMAESVVKILLREGFIENVRK--HRENNKYFLVSTLRHRRNRKGTYRNIL--KRISRPGLRIYSNYQRIPRILGGMGIVILSTSRGIMTDREARLEGIGGEVLCYIW 132          
BLAST of CX069676 vs. ExPASy Swiss-Prot
Match: RR8_CALFG (30S ribosomal protein S8, chloroplastic OS=Calycanthus floridus var. glaucus GN=rps8 PE=3 SV=1)

HSP 1 Score: 209.534 bits (532), Expect = 1.993e-53
Identity = 110/136 (80.88%), Postives = 120/136 (88.24%), Query Frame = -2
Query:   70 MGKDTIADIITSIRNADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKNKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 477
            MG+DTIADI+TSIRNA+M++KGTVRIASTNITEN+VKILLREGFIEN RK    +N K FLV TL+HRRNRKG YR IL  KRISRPGLRIY NY+RIPRIL GMGIVILSTS+GIMTDR ARLE IGGEILCYIW
Sbjct:    1 MGRDTIADILTSIRNANMDKKGTVRIASTNITENIVKILLREGFIENVRK--HQENNKYFLVSTLQHRRNRKGRYRTIL--KRISRPGLRIYSNYQRIPRILGGMGIVILSTSQGIMTDREARLEGIGGEILCYIW 132          
The following BLAST results are available for this feature:
BLAST of CX069676 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RR8_IPOPU1.057e-5480.1530S ribosomal protein S8, chloroplastic OS=Ipomoea... [more]
RR8_OLIPU1.803e-5480.1530S ribosomal protein S8, chloroplastic OS=Olimara... [more]
RR8_LOBMA1.803e-5480.1530S ribosomal protein S8, chloroplastic OS=Lobular... [more]
RR8_CAPBU1.803e-5480.1530S ribosomal protein S8, chloroplastic OS=Capsell... [more]
RR8_BUXMI1.803e-5482.3530S ribosomal protein S8, chloroplastic OS=Buxus m... [more]
RR8_AETGR2.354e-5479.4130S ribosomal protein S8, chloroplastic OS=Aethion... [more]
RR8_LOTJA4.016e-5479.4130S ribosomal protein S8, chloroplastic OS=Lotus j... [more]
RR8_OENEH8.946e-5479.2930S ribosomal protein S8, chloroplastic OS=Oenothe... [more]
RR8_LIRTU1.993e-5380.8830S ribosomal protein S8, chloroplastic OS=Liriode... [more]
RR8_CALFG1.993e-5380.8830S ribosomal protein S8, chloroplastic OS=Calycan... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_12B02_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-12B02-D4-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069676 ID=CX069676; Name=CX069676; organism=Citrus sinensis; type=EST; length=877bp
AATCCTCCCTTTTTTTTTCTCACAACATAAAAGTAAGCTCCAAATACAAT
TCGGATAGCAGAATAATTACCATATATAACACAAAATTTCTCCACCGATT
CTTTCCAGTCGAGCCGCTCGGTCTGTCATTATACCCCGAGAAGTAGAGAG
AATTACAATCCCCATCCCATCTAAAATTCTAGGAATTCGTCGATAGTTAA
AATAGATTCGTAGACCGGGTCGACTGATTCGTTTTAAATTTAAAATGGGT
CTATACGGCCCTTTCCTATTCCTTCGATGTCGTAGGGTTAAAACCAAAAA
CTCTTTTTTGTTTTTGTTTTCCACGAGTTTCCTTGCGTTTTCGATAAAAC
CCTCTCGCAAAAGGATTTTAACAACGTTTTCGGTGATGTTAGTAGATGCT
ATTCGAACCGTTCCCTTTCTATTCATGTCAGCATTTCGTATAGAAGTTAT
TATGTCAGCAATAGTGTCCTTGCCCATGATAAACTGAAAATTTTGTTGCT
TCCAAATTTTGATATAATCAACATGTTCTTTTTTTTATGAAAATTATTAA
AAGTATATGCGTGAGACATACTCTACTAAATTTTGATTTATCTATTTTAT
TTTCATACTATCACTATATCGCGGTCCCCTCTTATAATACTTCAGGTGCT
AATGAAACTATTTTAGTAAAATTCAACTGTCTCAATTCCCGGGCGATCGC
ACCAAAAACTCGAGTTCCCTTTGGATTTCCTTCGTGATCAATGACAACTG
CAGCATTGTCATCGTACCGTATTATCATACCGTTATCACGTCTGAGTTCT
TTACAAGTACGTACAATTACAGCTCTGATCACTTCTGATCTTTCTAGAGG
CGTATTGGGTACTGCTTCCTTGATCAC
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