CX069676
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX069676 vs. ExPASy Swiss-Prot
Match: RS8_THEM4 (30S ribosomal protein S8 OS=Thermosipho melanesiensis (strain BI429 / DSM 12029) GN=rpsH PE=3 SV=1) HSP 1 Score: 105.531 bits (262), Expect = 4.053e-22 Identity = 52/136 (38.24%), Postives = 90/136 (66.18%), Query Frame = -2 Query: 70 MGKDTIADIITSIRNADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKNKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 477 M D IAD++T IRNA++ K V I ++N+ + + +IL REGFI++ + + K + + + ++++ R+ R I + RIS+PG RIY + +P++ +G+GI IL+TS+G++TD+ AR +GGE++ YIW Sbjct: 1 MWSDPIADMLTRIRNANVVFKDQVDIPASNLKKEIAEILKREGFIKDYTYIEDGK--QGIIRIQMKYKGTRRNRERVIHGIVRISKPGRRIYVDKEHLPKVKNGLGIAILTTSKGVITDKQAREIGVGGEVIAYIW 134
BLAST of CX069676 vs. ExPASy Swiss-Prot
Match: RS8_SYMTH (30S ribosomal protein S8 OS=Symbiobacterium thermophilum GN=rpsH PE=3 SV=1) HSP 1 Score: 105.531 bits (262), Expect = 4.053e-22 Identity = 55/133 (41.35%), Postives = 87/133 (65.41%), Query Frame = -2 Query: 70 DTIADIITSIRNADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKNKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 468 D IAD++T IRNA++ V + + + + +V+I+ EGFI + + + + + + L++ N+ R I L+RIS+PGLR+Y +IPR+L G+GI ILSTS+G+MTD+ AR + +GGE+LCYIW Sbjct: 5 DPIADLLTRIRNANLAYHDRVDVPGSKMKKAIVQIMKDEGFIRDFEWI--DNGHQGVIRIYLKYGPNKT---RVISGLRRISKPGLRVYAKRDQIPRVLGGLGIAILSTSKGVMTDKQARQQGLGGEVLCYIW 132
BLAST of CX069676 vs. ExPASy Swiss-Prot
Match: RS8_SULSY (30S ribosomal protein S8 OS=Sulfurihydrogenibium sp. (strain YO3AOP1) GN=rpsH PE=3 SV=1) HSP 1 Score: 105.531 bits (262), Expect = 4.053e-22 Identity = 59/136 (43.38%), Postives = 87/136 (63.97%), Query Frame = -2 Query: 70 DTIADIITSIRNADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKNKKE-FLVLTLRH--RRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 468 D IAD+I I NA RK V + ++ I E + +IL REG+IE+ ENK + L++ L++ RRN K I ++R+S+PGLR Y + +P + G+GI IL+T++GIMTD AR +R+GGEI+CY+W Sbjct: 4 DPIADMIARINNAIKARKDEVSVPTSKIKEQLSEILKREGYIEDYVVSEENKKGNQGTLIIKLKYLGRRNTKPA---ISKIQRVSKPGLRKYVSVDEMPYVQKGLGIAILTTNKGIMTDSEARKQRLGGEIICYVW 136
BLAST of CX069676 vs. ExPASy Swiss-Prot
Match: RS8_PELTS (30S ribosomal protein S8 OS=Pelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI) GN=rpsH PE=3 SV=1) HSP 1 Score: 105.531 bits (262), Expect = 4.053e-22 Identity = 53/133 (39.85%), Postives = 86/133 (64.66%), Query Frame = -2 Query: 70 DTIADIITSIRNADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKNKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 468 D IAD +T IRNA+ V ++ + + + IL EGF+++ + + K+ + + L++ N++ R I LKRIS+PGLR+Y ++P++L G+GI I+STS+GIMTD+ AR E +GGE++CY+W Sbjct: 5 DPIADFLTRIRNANTVYHEKVEAPASKVKKAIANILKDEGFVKDCEFI--DDGKQGIIRIYLKYGPNKE---RVITGLKRISKPGLRVYARKDQVPKVLGGLGIAIISTSKGIMTDKKARKEGLGGEVICYVW 132
BLAST of CX069676 vs. ExPASy Swiss-Prot
Match: RS8_LEUCK (30S ribosomal protein S8 OS=Leuconostoc citreum (strain KM20) GN=rpsH PE=3 SV=1) HSP 1 Score: 105.531 bits (262), Expect = 4.053e-22 Identity = 53/133 (39.85%), Postives = 84/133 (63.16%), Query Frame = -2 Query: 70 DTIADIITSIRNADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKNKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 468 D IAD++T IRNA++ V I ++ I +++ +IL EGFI + + +NK + L RNR I +KRIS+PGLR Y +P++L+G+GI I+STS G++TD+ AR +++GGE++ Y+W Sbjct: 5 DPIADLLTRIRNANLAHHEVVEIPASKIKKSIAEILKSEGFIRDVEYIEDNKQGVIRVFLKYGEDRNRV-----ITGIKRISKPGLRKYAKADSLPKVLNGLGIAIISTSAGVITDKEARSKQVGGEVIAYVW 132
BLAST of CX069676 vs. ExPASy Swiss-Prot
Match: RS8_LACS1 (30S ribosomal protein S8 OS=Lactobacillus salivarius subsp. salivarius (strain UCC118) GN=rpsH PE=3 SV=1) HSP 1 Score: 105.531 bits (262), Expect = 4.053e-22 Identity = 52/133 (39.10%), Postives = 88/133 (66.17%), Query Frame = -2 Query: 70 DTIADIITSIRNADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKNKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 468 D IAD +T IRNA+M + ++ + ++ I ++ +IL EGF+ + + + +K+ + + L++ KG R I ++RIS+PGLR Y +P++L+G+GI ILSTS G++TD+ AR ++IGGE++ YIW Sbjct: 5 DPIADFLTRIRNANMAKHESLEVPASKIKRDIAEILKNEGFVRDVEYI--DDDKQGIIRVFLKYG---KGNERVISGIRRISKPGLRSYVKADAVPKVLNGLGIAILSTSEGVITDKEARAKKIGGEVIAYIW 132
BLAST of CX069676 vs. ExPASy Swiss-Prot
Match: RS8_AZOPC (30S ribosomal protein S8 OS=Azobacteroides pseudotrichonymphae genomovar. CFP2 GN=rpsH PE=3 SV=1) HSP 1 Score: 105.531 bits (262), Expect = 4.053e-22 Identity = 57/133 (42.86%), Postives = 88/133 (66.17%), Query Frame = -2 Query: 70 DTIADIITSIRNADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKNKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 468 D IAD +T +RNA + V I ++N+ + + KIL +G+I + R +E+K++ + + N+ I LKRIS+PGLR Y +YR++ R+L+G+GI ILSTS+G+MTD+ AR +IGGE+LCYI+ Sbjct: 3 DPIADYLTRLRNAIKAKHKIVEIPASNLKKEITKILCNKGYIWDYR-FIEDKHQGKIKIAMKYSNINK---VNAIKVLKRISKPGLRKYTSYRKMSRVLNGLGIAILSTSKGVMTDKEARDLKIGGEVLCYIY 131
BLAST of CX069676 vs. ExPASy Swiss-Prot
Match: RS8_ACIAD (30S ribosomal protein S8 OS=Acinetobacter sp. (strain ADP1) GN=rpsH PE=3 SV=1) HSP 1 Score: 105.531 bits (262), Expect = 4.053e-22 Identity = 56/134 (41.79%), Postives = 86/134 (64.18%), Query Frame = -2 Query: 73 KDTIADIITSIRNADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKNKKEFLVLTLRHRRNRKGPYRPILN-LKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYI 471 +DT+AD++T +RNA M +K TV + S+ + + +L +EG+I N V + K L LTL++ + P++ +KR+SRPGLR Y +IP + G+GI I+STS+GIMTDRAAR IGGE++ ++ Sbjct: 4 QDTVADMLTRVRNAQMAKKQTVSMPSSKLKVAIANVLQQEGYISNVE--VAQEEAKATLTLTLKYFEGK-----PVIETVKRVSRPGLRQYRGKDKIPSVKQGLGIAIVSTSKGIMTDRAARAAGIGGEVIAFV 130
BLAST of CX069676 vs. ExPASy Swiss-Prot
Match: RL14_SYNS3 (50S ribosomal protein L14 OS=Synechococcus sp. (strain CC9311) GN=rplN PE=3 SV=1) HSP 1 Score: 105.531 bits (262), Expect = 4.053e-22 Identity = 48/80 (60.00%), Postives = 68/80 (85.00%), Query Frame = -1 Query: 635 IKEAVPNTPLERSEVIRAVIVRTCKELRRDNGMIIRYDDNAAVVIDHEGNPKGTRVFGAIARELRQLNFTKIVSLAPEVL 874 +K+A+PN +++S++++AV+VRT +RRD G IR+DDNAAV+I+ + NPKGTRVFG +ARELR+ +FTKIVSLAPEV+ Sbjct: 42 VKDAMPNMGVKKSDIVKAVVVRTKATMRRDTGNSIRFDDNAAVIINDDKNPKGTRVFGPVARELRERSFTKIVSLAPEVI 121
BLAST of CX069676 vs. ExPASy Swiss-Prot
Match: RL14_PROMA (50S ribosomal protein L14 OS=Prochlorococcus marinus GN=rplN PE=3 SV=1) HSP 1 Score: 105.531 bits (262), Expect = 4.053e-22 Identity = 49/80 (61.25%), Postives = 68/80 (85.00%), Query Frame = -1 Query: 635 IKEAVPNTPLERSEVIRAVIVRTCKELRRDNGMIIRYDDNAAVVIDHEGNPKGTRVFGAIARELRQLNFTKIVSLAPEVL 874 +K+AVPN +++S+V++AV+VRT LRR+ G IR+DDNAAV+I+ + NP+GTRVFG +ARELR+ N+TKIVSLAPEV+ Sbjct: 42 VKDAVPNMGVKKSDVVKAVVVRTKATLRRETGNSIRFDDNAAVLINEDKNPRGTRVFGPVARELRERNYTKIVSLAPEVI 121 The following BLAST results are available for this feature:
BLAST of CX069676 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CX069676 ID=CX069676; Name=CX069676; organism=Citrus sinensis; type=EST; length=877bpback to top |