CX069676

Overview
NameCX069676
Unique NameCX069676
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length877
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX069676 vs. ExPASy Swiss-Prot
Match: RS8_THEM4 (30S ribosomal protein S8 OS=Thermosipho melanesiensis (strain BI429 / DSM 12029) GN=rpsH PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 4.053e-22
Identity = 52/136 (38.24%), Postives = 90/136 (66.18%), Query Frame = -2
Query:   70 MGKDTIADIITSIRNADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKNKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 477
            M  D IAD++T IRNA++  K  V I ++N+ + + +IL REGFI++   + + K  +  + + ++++  R+   R I  + RIS+PG RIY +   +P++ +G+GI IL+TS+G++TD+ AR   +GGE++ YIW
Sbjct:    1 MWSDPIADMLTRIRNANVVFKDQVDIPASNLKKEIAEILKREGFIKDYTYIEDGK--QGIIRIQMKYKGTRRNRERVIHGIVRISKPGRRIYVDKEHLPKVKNGLGIAILTTSKGVITDKQAREIGVGGEVIAYIW 134          
BLAST of CX069676 vs. ExPASy Swiss-Prot
Match: RS8_SYMTH (30S ribosomal protein S8 OS=Symbiobacterium thermophilum GN=rpsH PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 4.053e-22
Identity = 55/133 (41.35%), Postives = 87/133 (65.41%), Query Frame = -2
Query:   70 DTIADIITSIRNADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKNKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 468
            D IAD++T IRNA++     V +  + + + +V+I+  EGFI +   +  +   +  + + L++  N+    R I  L+RIS+PGLR+Y    +IPR+L G+GI ILSTS+G+MTD+ AR + +GGE+LCYIW
Sbjct:    5 DPIADLLTRIRNANLAYHDRVDVPGSKMKKAIVQIMKDEGFIRDFEWI--DNGHQGVIRIYLKYGPNKT---RVISGLRRISKPGLRVYAKRDQIPRVLGGLGIAILSTSKGVMTDKQARQQGLGGEVLCYIW 132          
BLAST of CX069676 vs. ExPASy Swiss-Prot
Match: RS8_SULSY (30S ribosomal protein S8 OS=Sulfurihydrogenibium sp. (strain YO3AOP1) GN=rpsH PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 4.053e-22
Identity = 59/136 (43.38%), Postives = 87/136 (63.97%), Query Frame = -2
Query:   70 DTIADIITSIRNADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKNKKE-FLVLTLRH--RRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 468
            D IAD+I  I NA   RK  V + ++ I E + +IL REG+IE+     ENK   +  L++ L++  RRN K     I  ++R+S+PGLR Y +   +P +  G+GI IL+T++GIMTD  AR +R+GGEI+CY+W
Sbjct:    4 DPIADMIARINNAIKARKDEVSVPTSKIKEQLSEILKREGYIEDYVVSEENKKGNQGTLIIKLKYLGRRNTKPA---ISKIQRVSKPGLRKYVSVDEMPYVQKGLGIAILTTNKGIMTDSEARKQRLGGEIICYVW 136          
BLAST of CX069676 vs. ExPASy Swiss-Prot
Match: RS8_PELTS (30S ribosomal protein S8 OS=Pelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI) GN=rpsH PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 4.053e-22
Identity = 53/133 (39.85%), Postives = 86/133 (64.66%), Query Frame = -2
Query:   70 DTIADIITSIRNADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKNKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 468
            D IAD +T IRNA+      V   ++ + + +  IL  EGF+++   +  +  K+  + + L++  N++   R I  LKRIS+PGLR+Y    ++P++L G+GI I+STS+GIMTD+ AR E +GGE++CY+W
Sbjct:    5 DPIADFLTRIRNANTVYHEKVEAPASKVKKAIANILKDEGFVKDCEFI--DDGKQGIIRIYLKYGPNKE---RVITGLKRISKPGLRVYARKDQVPKVLGGLGIAIISTSKGIMTDKKARKEGLGGEVICYVW 132          
BLAST of CX069676 vs. ExPASy Swiss-Prot
Match: RS8_LEUCK (30S ribosomal protein S8 OS=Leuconostoc citreum (strain KM20) GN=rpsH PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 4.053e-22
Identity = 53/133 (39.85%), Postives = 84/133 (63.16%), Query Frame = -2
Query:   70 DTIADIITSIRNADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKNKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 468
            D IAD++T IRNA++     V I ++ I +++ +IL  EGFI +   + +NK     + L     RNR      I  +KRIS+PGLR Y     +P++L+G+GI I+STS G++TD+ AR +++GGE++ Y+W
Sbjct:    5 DPIADLLTRIRNANLAHHEVVEIPASKIKKSIAEILKSEGFIRDVEYIEDNKQGVIRVFLKYGEDRNRV-----ITGIKRISKPGLRKYAKADSLPKVLNGLGIAIISTSAGVITDKEARSKQVGGEVIAYVW 132          
BLAST of CX069676 vs. ExPASy Swiss-Prot
Match: RS8_LACS1 (30S ribosomal protein S8 OS=Lactobacillus salivarius subsp. salivarius (strain UCC118) GN=rpsH PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 4.053e-22
Identity = 52/133 (39.10%), Postives = 88/133 (66.17%), Query Frame = -2
Query:   70 DTIADIITSIRNADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKNKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 468
            D IAD +T IRNA+M +  ++ + ++ I  ++ +IL  EGF+ +   +  + +K+  + + L++    KG  R I  ++RIS+PGLR Y     +P++L+G+GI ILSTS G++TD+ AR ++IGGE++ YIW
Sbjct:    5 DPIADFLTRIRNANMAKHESLEVPASKIKRDIAEILKNEGFVRDVEYI--DDDKQGIIRVFLKYG---KGNERVISGIRRISKPGLRSYVKADAVPKVLNGLGIAILSTSEGVITDKEARAKKIGGEVIAYIW 132          
BLAST of CX069676 vs. ExPASy Swiss-Prot
Match: RS8_AZOPC (30S ribosomal protein S8 OS=Azobacteroides pseudotrichonymphae genomovar. CFP2 GN=rpsH PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 4.053e-22
Identity = 57/133 (42.86%), Postives = 88/133 (66.17%), Query Frame = -2
Query:   70 DTIADIITSIRNADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKNKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 468
            D IAD +T +RNA   +   V I ++N+ + + KIL  +G+I + R  +E+K++ +  +       N+      I  LKRIS+PGLR Y +YR++ R+L+G+GI ILSTS+G+MTD+ AR  +IGGE+LCYI+
Sbjct:    3 DPIADYLTRLRNAIKAKHKIVEIPASNLKKEITKILCNKGYIWDYR-FIEDKHQGKIKIAMKYSNINK---VNAIKVLKRISKPGLRKYTSYRKMSRVLNGLGIAILSTSKGVMTDKEARDLKIGGEVLCYIY 131          
BLAST of CX069676 vs. ExPASy Swiss-Prot
Match: RS8_ACIAD (30S ribosomal protein S8 OS=Acinetobacter sp. (strain ADP1) GN=rpsH PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 4.053e-22
Identity = 56/134 (41.79%), Postives = 86/134 (64.18%), Query Frame = -2
Query:   73 KDTIADIITSIRNADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKNKKEFLVLTLRHRRNRKGPYRPILN-LKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYI 471
            +DT+AD++T +RNA M +K TV + S+ +   +  +L +EG+I N    V  +  K  L LTL++   +     P++  +KR+SRPGLR Y    +IP +  G+GI I+STS+GIMTDRAAR   IGGE++ ++
Sbjct:    4 QDTVADMLTRVRNAQMAKKQTVSMPSSKLKVAIANVLQQEGYISNVE--VAQEEAKATLTLTLKYFEGK-----PVIETVKRVSRPGLRQYRGKDKIPSVKQGLGIAIVSTSKGIMTDRAARAAGIGGEVIAFV 130          
BLAST of CX069676 vs. ExPASy Swiss-Prot
Match: RL14_SYNS3 (50S ribosomal protein L14 OS=Synechococcus sp. (strain CC9311) GN=rplN PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 4.053e-22
Identity = 48/80 (60.00%), Postives = 68/80 (85.00%), Query Frame = -1
Query:  635 IKEAVPNTPLERSEVIRAVIVRTCKELRRDNGMIIRYDDNAAVVIDHEGNPKGTRVFGAIARELRQLNFTKIVSLAPEVL 874
            +K+A+PN  +++S++++AV+VRT   +RRD G  IR+DDNAAV+I+ + NPKGTRVFG +ARELR+ +FTKIVSLAPEV+
Sbjct:   42 VKDAMPNMGVKKSDIVKAVVVRTKATMRRDTGNSIRFDDNAAVIINDDKNPKGTRVFGPVARELRERSFTKIVSLAPEVI 121          
BLAST of CX069676 vs. ExPASy Swiss-Prot
Match: RL14_PROMA (50S ribosomal protein L14 OS=Prochlorococcus marinus GN=rplN PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 4.053e-22
Identity = 49/80 (61.25%), Postives = 68/80 (85.00%), Query Frame = -1
Query:  635 IKEAVPNTPLERSEVIRAVIVRTCKELRRDNGMIIRYDDNAAVVIDHEGNPKGTRVFGAIARELRQLNFTKIVSLAPEVL 874
            +K+AVPN  +++S+V++AV+VRT   LRR+ G  IR+DDNAAV+I+ + NP+GTRVFG +ARELR+ N+TKIVSLAPEV+
Sbjct:   42 VKDAVPNMGVKKSDVVKAVVVRTKATLRRETGNSIRFDDNAAVLINEDKNPRGTRVFGPVARELRERNYTKIVSLAPEVI 121          
The following BLAST results are available for this feature:
BLAST of CX069676 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RS8_THEM44.053e-2238.2430S ribosomal protein S8 OS=Thermosipho melanesien... [more]
RS8_SYMTH4.053e-2241.3530S ribosomal protein S8 OS=Symbiobacterium thermo... [more]
RS8_SULSY4.053e-2243.3830S ribosomal protein S8 OS=Sulfurihydrogenibium s... [more]
RS8_PELTS4.053e-2239.8530S ribosomal protein S8 OS=Pelotomaculum thermopr... [more]
RS8_LEUCK4.053e-2239.8530S ribosomal protein S8 OS=Leuconostoc citreum (s... [more]
RS8_LACS14.053e-2239.1030S ribosomal protein S8 OS=Lactobacillus salivari... [more]
RS8_AZOPC4.053e-2242.8630S ribosomal protein S8 OS=Azobacteroides pseudot... [more]
RS8_ACIAD4.053e-2241.7930S ribosomal protein S8 OS=Acinetobacter sp. (str... [more]
RL14_SYNS34.053e-2260.0050S ribosomal protein L14 OS=Synechococcus sp. (st... [more]
RL14_PROMA4.053e-2261.2550S ribosomal protein L14 OS=Prochlorococcus marin... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_12B02_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-12B02-D4-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069676 ID=CX069676; Name=CX069676; organism=Citrus sinensis; type=EST; length=877bp
AATCCTCCCTTTTTTTTTCTCACAACATAAAAGTAAGCTCCAAATACAAT
TCGGATAGCAGAATAATTACCATATATAACACAAAATTTCTCCACCGATT
CTTTCCAGTCGAGCCGCTCGGTCTGTCATTATACCCCGAGAAGTAGAGAG
AATTACAATCCCCATCCCATCTAAAATTCTAGGAATTCGTCGATAGTTAA
AATAGATTCGTAGACCGGGTCGACTGATTCGTTTTAAATTTAAAATGGGT
CTATACGGCCCTTTCCTATTCCTTCGATGTCGTAGGGTTAAAACCAAAAA
CTCTTTTTTGTTTTTGTTTTCCACGAGTTTCCTTGCGTTTTCGATAAAAC
CCTCTCGCAAAAGGATTTTAACAACGTTTTCGGTGATGTTAGTAGATGCT
ATTCGAACCGTTCCCTTTCTATTCATGTCAGCATTTCGTATAGAAGTTAT
TATGTCAGCAATAGTGTCCTTGCCCATGATAAACTGAAAATTTTGTTGCT
TCCAAATTTTGATATAATCAACATGTTCTTTTTTTTATGAAAATTATTAA
AAGTATATGCGTGAGACATACTCTACTAAATTTTGATTTATCTATTTTAT
TTTCATACTATCACTATATCGCGGTCCCCTCTTATAATACTTCAGGTGCT
AATGAAACTATTTTAGTAAAATTCAACTGTCTCAATTCCCGGGCGATCGC
ACCAAAAACTCGAGTTCCCTTTGGATTTCCTTCGTGATCAATGACAACTG
CAGCATTGTCATCGTACCGTATTATCATACCGTTATCACGTCTGAGTTCT
TTACAAGTACGTACAATTACAGCTCTGATCACTTCTGATCTTTCTAGAGG
CGTATTGGGTACTGCTTCCTTGATCAC
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