CX069676
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX069676 vs. ExPASy Swiss-Prot
Match: RR8_CYCTA (30S ribosomal protein S8, chloroplastic OS=Cycas taitungensis GN=rps8 PE=3 SV=1) HSP 1 Score: 159.844 bits (403), Expect = 1.811e-38 Identity = 84/135 (62.22%), Postives = 107/135 (79.26%), Query Frame = -2 Query: 73 MGKDTIADIITSIRNADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKNKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYI 477 MG DTIA+IITSIRNAD+ +K TVRI +TN T+NVV+ILL+EGFIE+AR+ + +K F VLTLR+R ++ Y I KR S+PGLRIY N +++P++L GMG+VILSTS+GIMTDR AR RIGGEILCY+ Sbjct: 1 MGNDTIANIITSIRNADIVKKKTVRIIATNTTKNVVRILLQEGFIEDARE--HREGQKSFSVLTLRYRGRKEKTY--ITTSKRTSKPGLRIYSNSQKVPKVLGGMGVVILSTSQGIMTDREARRRRIGGEILCYV 131
BLAST of CX069676 vs. ExPASy Swiss-Prot
Match: RR8_MARPO (30S ribosomal protein S8, chloroplastic OS=Marchantia polymorpha GN=rps8 PE=3 SV=1) HSP 1 Score: 158.303 bits (399), Expect = 5.269e-38 Identity = 79/137 (57.66%), Postives = 108/137 (78.83%), Query Frame = -2 Query: 70 MGKDTIADIITSIRNADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENK-NKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 477 MG DTIA++ITSIRNA++ + TV++ +TNIT N+ KIL +EGFI+N ++NK N K+ L+L L+++ +K Y I L+RIS+PGLRIY N++ IP++L GMGIVILSTSRGIMTDR AR ++IGGE+LCY+W Sbjct: 1 MGNDTIANMITSIRNANLGKIKTVQVPATNITRNIAKILFQEGFIDN---FIDNKQNTKDILILNLKYQGKKKKSY--ITTLRRISKPGLRIYSNHKEIPKVLGGMGIVILSTSRGIMTDREARQKKIGGELLCYVW 132
BLAST of CX069676 vs. ExPASy Swiss-Prot
Match: RR8_HUPLU (30S ribosomal protein S8, chloroplastic OS=Huperzia lucidula GN=rps8 PE=3 SV=1) HSP 1 Score: 157.532 bits (397), Expect = 8.988e-38 Identity = 75/136 (55.15%), Postives = 108/136 (79.41%), Query Frame = -2 Query: 70 MGKDTIADIITSIRNADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKNKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 477 MG DTIA++ITS+RNA++ ++ TVR+ +TNI ++ KILL+EGF++N +L E N F++LTL++R ++ PY I L+RIS+PGLR+Y+NY++IP++L GMG+VI STS G MTDR AR ++IGGEILCY+W Sbjct: 1 MGNDTIANMITSVRNANLGKEETVRVPATNINRSIGKILLQEGFVKNLGELREGTN--HFMILTLKYRGRKREPY--ITTLRRISKPGLRLYYNYKKIPKVLGGMGVVIPSTSCGTMTDREARQKQIGGEILCYVW 132
BLAST of CX069676 vs. ExPASy Swiss-Prot
Match: RR8_MUSAC (30S ribosomal protein S8, chloroplastic (Fragment) OS=Musa acuminata GN=rps8 PE=3 SV=1) HSP 1 Score: 156.762 bits (395), Expect = 1.533e-37 Identity = 85/112 (75.89%), Postives = 95/112 (84.82%), Query Frame = -2 Query: 142 MGKDTIADIITSIRNADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKNKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILST 477 MGKDTIADIITSIRNADMN+KGTVRIASTNITEN+VKILLREGFIEN RK + K FLV TLRHR+ RK +R I LKRISRPGLRIY +Y++IP+IL G+GIVILST Sbjct: 1 MGKDTIADIITSIRNADMNKKGTVRIASTNITENIVKILLREGFIENVRK--HQEGNKYFLVSTLRHRKTRKRIHRTI--LKRISRPGLRIYSDYQQIPKILGGIGIVILST 108
BLAST of CX069676 vs. ExPASy Swiss-Prot
Match: RK14_LIRTU (50S ribosomal protein L14, chloroplastic OS=Liriodendron tulipifera GN=rpl14 PE=3 SV=1) HSP 1 Score: 154.836 bits (390), Expect = 5.826e-37 Identity = 79/81 (97.53%), Postives = 79/81 (97.53%), Query Frame = -1 Query: 635 VIKEAVPNTPLERSEVIRAVIVRTCKELRRDNGMIIRYDDNAAVVIDHEGNPKGTRVFGAIARELRQLNFTKIVSLAPEVL 877 VIKEAVPN PLERSEVIRAVIVRTCKELRRDNGMIIRYDDNAAVVID EGNPKGTRVFGAIARELRQLNFTKIVSLAPEVL Sbjct: 42 VIKEAVPNMPLERSEVIRAVIVRTCKELRRDNGMIIRYDDNAAVVIDQEGNPKGTRVFGAIARELRQLNFTKIVSLAPEVL 122
BLAST of CX069676 vs. ExPASy Swiss-Prot
Match: RK14_EUCGG (50S ribosomal protein L14, chloroplastic OS=Eucalyptus globulus subsp. globulus GN=rpl14 PE=3 SV=1) HSP 1 Score: 154.836 bits (390), Expect = 5.826e-37 Identity = 78/81 (96.30%), Postives = 80/81 (98.77%), Query Frame = -1 Query: 635 VIKEAVPNTPLERSEVIRAVIVRTCKELRRDNGMIIRYDDNAAVVIDHEGNPKGTRVFGAIARELRQLNFTKIVSLAPEVL 877 VIKEA+PNTPLERSEVIRAVIVRTCKEL+RDNGMIIRYDDNAAVVID EGNPKGTRVFGAIARELRQLNFTKIVSLAPEVL Sbjct: 42 VIKEALPNTPLERSEVIRAVIVRTCKELKRDNGMIIRYDDNAAVVIDQEGNPKGTRVFGAIARELRQLNFTKIVSLAPEVL 122
BLAST of CX069676 vs. ExPASy Swiss-Prot
Match: RK14_PIPCE (50S ribosomal protein L14, chloroplastic OS=Piper cenocladum GN=rpl14 PE=3 SV=1) HSP 1 Score: 153.68 bits (387), Expect = 1.298e-36 Identity = 78/81 (96.30%), Postives = 79/81 (97.53%), Query Frame = -1 Query: 635 VIKEAVPNTPLERSEVIRAVIVRTCKELRRDNGMIIRYDDNAAVVIDHEGNPKGTRVFGAIARELRQLNFTKIVSLAPEVL 877 VIKEAVPN PLERSEVIRAVIVRTCKEL+RDNGMIIRYDDNAAVVID EGNPKGTRVFGAIARELRQLNFTKIVSLAPEVL Sbjct: 42 VIKEAVPNMPLERSEVIRAVIVRTCKELKRDNGMIIRYDDNAAVVIDQEGNPKGTRVFGAIARELRQLNFTKIVSLAPEVL 122
BLAST of CX069676 vs. ExPASy Swiss-Prot
Match: RK14_ILLOL (50S ribosomal protein L14, chloroplastic OS=Illicium oligandrum GN=rpl14 PE=3 SV=1) HSP 1 Score: 153.68 bits (387), Expect = 1.298e-36 Identity = 78/81 (96.30%), Postives = 79/81 (97.53%), Query Frame = -1 Query: 635 VIKEAVPNTPLERSEVIRAVIVRTCKELRRDNGMIIRYDDNAAVVIDHEGNPKGTRVFGAIARELRQLNFTKIVSLAPEVL 877 VIKEAVPN PLERSEVIRAVIVRTCKEL+RDNGMIIRYDDNAAVVID EGNPKGTRVFGAIARELRQLNFTKIVSLAPEVL Sbjct: 42 VIKEAVPNMPLERSEVIRAVIVRTCKELKRDNGMIIRYDDNAAVVIDQEGNPKGTRVFGAIARELRQLNFTKIVSLAPEVL 122
BLAST of CX069676 vs. ExPASy Swiss-Prot
Match: RK14_COFAR (50S ribosomal protein L14, chloroplastic OS=Coffea arabica GN=rpl14 PE=3 SV=1) HSP 1 Score: 152.91 bits (385), Expect = 2.214e-36 Identity = 76/81 (93.83%), Postives = 79/81 (97.53%), Query Frame = -1 Query: 635 VIKEAVPNTPLERSEVIRAVIVRTCKELRRDNGMIIRYDDNAAVVIDHEGNPKGTRVFGAIARELRQLNFTKIVSLAPEVL 877 VIKEAVPN PLERSEV+RAVIVRTCKEL+RDNGMIIRYDDNAAVVID EGNPKGTR+FGAIARELRQLNFTKIVSLAPEVL Sbjct: 42 VIKEAVPNMPLERSEVVRAVIVRTCKELKRDNGMIIRYDDNAAVVIDQEGNPKGTRIFGAIARELRQLNFTKIVSLAPEVL 122
BLAST of CX069676 vs. ExPASy Swiss-Prot
Match: RK14_PHAAO (50S ribosomal protein L14, chloroplastic OS=Phalaenopsis aphrodite subsp. formosana GN=rpl14 PE=3 SV=1) HSP 1 Score: 152.525 bits (384), Expect = 2.891e-36 Identity = 75/81 (92.59%), Postives = 79/81 (97.53%), Query Frame = -1 Query: 635 VIKEAVPNTPLERSEVIRAVIVRTCKELRRDNGMIIRYDDNAAVVIDHEGNPKGTRVFGAIARELRQLNFTKIVSLAPEVL 877 VIKEAVPN PLERSE+IRAVIVRTCKEL+RDNGMIIRYDDNAAV+ID EGNPKGTR+FGAIARELRQLNFTKIVSLAPEVL Sbjct: 42 VIKEAVPNMPLERSEIIRAVIVRTCKELKRDNGMIIRYDDNAAVIIDQEGNPKGTRIFGAIARELRQLNFTKIVSLAPEVL 122 The following BLAST results are available for this feature:
BLAST of CX069676 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CX069676 ID=CX069676; Name=CX069676; organism=Citrus sinensis; type=EST; length=877bpback to top |