CX069676

Overview
NameCX069676
Unique NameCX069676
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length877
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1652 contig Csv1_Contig1652:767..1643. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX069676 vs. ExPASy Swiss-Prot
Match: RR8_CYCTA (30S ribosomal protein S8, chloroplastic OS=Cycas taitungensis GN=rps8 PE=3 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 1.811e-38
Identity = 84/135 (62.22%), Postives = 107/135 (79.26%), Query Frame = -2
Query:   73 MGKDTIADIITSIRNADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKNKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYI 477
            MG DTIA+IITSIRNAD+ +K TVRI +TN T+NVV+ILL+EGFIE+AR+    + +K F VLTLR+R  ++  Y  I   KR S+PGLRIY N +++P++L GMG+VILSTS+GIMTDR AR  RIGGEILCY+
Sbjct:    1 MGNDTIANIITSIRNADIVKKKTVRIIATNTTKNVVRILLQEGFIEDARE--HREGQKSFSVLTLRYRGRKEKTY--ITTSKRTSKPGLRIYSNSQKVPKVLGGMGVVILSTSQGIMTDREARRRRIGGEILCYV 131          
BLAST of CX069676 vs. ExPASy Swiss-Prot
Match: RR8_MARPO (30S ribosomal protein S8, chloroplastic OS=Marchantia polymorpha GN=rps8 PE=3 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 5.269e-38
Identity = 79/137 (57.66%), Postives = 108/137 (78.83%), Query Frame = -2
Query:   70 MGKDTIADIITSIRNADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENK-NKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 477
            MG DTIA++ITSIRNA++ +  TV++ +TNIT N+ KIL +EGFI+N    ++NK N K+ L+L L+++  +K  Y  I  L+RIS+PGLRIY N++ IP++L GMGIVILSTSRGIMTDR AR ++IGGE+LCY+W
Sbjct:    1 MGNDTIANMITSIRNANLGKIKTVQVPATNITRNIAKILFQEGFIDN---FIDNKQNTKDILILNLKYQGKKKKSY--ITTLRRISKPGLRIYSNHKEIPKVLGGMGIVILSTSRGIMTDREARQKKIGGELLCYVW 132          
BLAST of CX069676 vs. ExPASy Swiss-Prot
Match: RR8_HUPLU (30S ribosomal protein S8, chloroplastic OS=Huperzia lucidula GN=rps8 PE=3 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 8.988e-38
Identity = 75/136 (55.15%), Postives = 108/136 (79.41%), Query Frame = -2
Query:   70 MGKDTIADIITSIRNADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKNKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 477
            MG DTIA++ITS+RNA++ ++ TVR+ +TNI  ++ KILL+EGF++N  +L E  N   F++LTL++R  ++ PY  I  L+RIS+PGLR+Y+NY++IP++L GMG+VI STS G MTDR AR ++IGGEILCY+W
Sbjct:    1 MGNDTIANMITSVRNANLGKEETVRVPATNINRSIGKILLQEGFVKNLGELREGTN--HFMILTLKYRGRKREPY--ITTLRRISKPGLRLYYNYKKIPKVLGGMGVVIPSTSCGTMTDREARQKQIGGEILCYVW 132          
BLAST of CX069676 vs. ExPASy Swiss-Prot
Match: RR8_MUSAC (30S ribosomal protein S8, chloroplastic (Fragment) OS=Musa acuminata GN=rps8 PE=3 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 1.533e-37
Identity = 85/112 (75.89%), Postives = 95/112 (84.82%), Query Frame = -2
Query:  142 MGKDTIADIITSIRNADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKNKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILST 477
            MGKDTIADIITSIRNADMN+KGTVRIASTNITEN+VKILLREGFIEN RK    +  K FLV TLRHR+ RK  +R I  LKRISRPGLRIY +Y++IP+IL G+GIVILST
Sbjct:    1 MGKDTIADIITSIRNADMNKKGTVRIASTNITENIVKILLREGFIENVRK--HQEGNKYFLVSTLRHRKTRKRIHRTI--LKRISRPGLRIYSDYQQIPKILGGIGIVILST 108          
BLAST of CX069676 vs. ExPASy Swiss-Prot
Match: RK14_LIRTU (50S ribosomal protein L14, chloroplastic OS=Liriodendron tulipifera GN=rpl14 PE=3 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 5.826e-37
Identity = 79/81 (97.53%), Postives = 79/81 (97.53%), Query Frame = -1
Query:  635 VIKEAVPNTPLERSEVIRAVIVRTCKELRRDNGMIIRYDDNAAVVIDHEGNPKGTRVFGAIARELRQLNFTKIVSLAPEVL 877
            VIKEAVPN PLERSEVIRAVIVRTCKELRRDNGMIIRYDDNAAVVID EGNPKGTRVFGAIARELRQLNFTKIVSLAPEVL
Sbjct:   42 VIKEAVPNMPLERSEVIRAVIVRTCKELRRDNGMIIRYDDNAAVVIDQEGNPKGTRVFGAIARELRQLNFTKIVSLAPEVL 122          
BLAST of CX069676 vs. ExPASy Swiss-Prot
Match: RK14_EUCGG (50S ribosomal protein L14, chloroplastic OS=Eucalyptus globulus subsp. globulus GN=rpl14 PE=3 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 5.826e-37
Identity = 78/81 (96.30%), Postives = 80/81 (98.77%), Query Frame = -1
Query:  635 VIKEAVPNTPLERSEVIRAVIVRTCKELRRDNGMIIRYDDNAAVVIDHEGNPKGTRVFGAIARELRQLNFTKIVSLAPEVL 877
            VIKEA+PNTPLERSEVIRAVIVRTCKEL+RDNGMIIRYDDNAAVVID EGNPKGTRVFGAIARELRQLNFTKIVSLAPEVL
Sbjct:   42 VIKEALPNTPLERSEVIRAVIVRTCKELKRDNGMIIRYDDNAAVVIDQEGNPKGTRVFGAIARELRQLNFTKIVSLAPEVL 122          
BLAST of CX069676 vs. ExPASy Swiss-Prot
Match: RK14_PIPCE (50S ribosomal protein L14, chloroplastic OS=Piper cenocladum GN=rpl14 PE=3 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 1.298e-36
Identity = 78/81 (96.30%), Postives = 79/81 (97.53%), Query Frame = -1
Query:  635 VIKEAVPNTPLERSEVIRAVIVRTCKELRRDNGMIIRYDDNAAVVIDHEGNPKGTRVFGAIARELRQLNFTKIVSLAPEVL 877
            VIKEAVPN PLERSEVIRAVIVRTCKEL+RDNGMIIRYDDNAAVVID EGNPKGTRVFGAIARELRQLNFTKIVSLAPEVL
Sbjct:   42 VIKEAVPNMPLERSEVIRAVIVRTCKELKRDNGMIIRYDDNAAVVIDQEGNPKGTRVFGAIARELRQLNFTKIVSLAPEVL 122          
BLAST of CX069676 vs. ExPASy Swiss-Prot
Match: RK14_ILLOL (50S ribosomal protein L14, chloroplastic OS=Illicium oligandrum GN=rpl14 PE=3 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 1.298e-36
Identity = 78/81 (96.30%), Postives = 79/81 (97.53%), Query Frame = -1
Query:  635 VIKEAVPNTPLERSEVIRAVIVRTCKELRRDNGMIIRYDDNAAVVIDHEGNPKGTRVFGAIARELRQLNFTKIVSLAPEVL 877
            VIKEAVPN PLERSEVIRAVIVRTCKEL+RDNGMIIRYDDNAAVVID EGNPKGTRVFGAIARELRQLNFTKIVSLAPEVL
Sbjct:   42 VIKEAVPNMPLERSEVIRAVIVRTCKELKRDNGMIIRYDDNAAVVIDQEGNPKGTRVFGAIARELRQLNFTKIVSLAPEVL 122          
BLAST of CX069676 vs. ExPASy Swiss-Prot
Match: RK14_COFAR (50S ribosomal protein L14, chloroplastic OS=Coffea arabica GN=rpl14 PE=3 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 2.214e-36
Identity = 76/81 (93.83%), Postives = 79/81 (97.53%), Query Frame = -1
Query:  635 VIKEAVPNTPLERSEVIRAVIVRTCKELRRDNGMIIRYDDNAAVVIDHEGNPKGTRVFGAIARELRQLNFTKIVSLAPEVL 877
            VIKEAVPN PLERSEV+RAVIVRTCKEL+RDNGMIIRYDDNAAVVID EGNPKGTR+FGAIARELRQLNFTKIVSLAPEVL
Sbjct:   42 VIKEAVPNMPLERSEVVRAVIVRTCKELKRDNGMIIRYDDNAAVVIDQEGNPKGTRIFGAIARELRQLNFTKIVSLAPEVL 122          
BLAST of CX069676 vs. ExPASy Swiss-Prot
Match: RK14_PHAAO (50S ribosomal protein L14, chloroplastic OS=Phalaenopsis aphrodite subsp. formosana GN=rpl14 PE=3 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 2.891e-36
Identity = 75/81 (92.59%), Postives = 79/81 (97.53%), Query Frame = -1
Query:  635 VIKEAVPNTPLERSEVIRAVIVRTCKELRRDNGMIIRYDDNAAVVIDHEGNPKGTRVFGAIARELRQLNFTKIVSLAPEVL 877
            VIKEAVPN PLERSE+IRAVIVRTCKEL+RDNGMIIRYDDNAAV+ID EGNPKGTR+FGAIARELRQLNFTKIVSLAPEVL
Sbjct:   42 VIKEAVPNMPLERSEIIRAVIVRTCKELKRDNGMIIRYDDNAAVIIDQEGNPKGTRIFGAIARELRQLNFTKIVSLAPEVL 122          
The following BLAST results are available for this feature:
BLAST of CX069676 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RR8_CYCTA1.811e-3862.2230S ribosomal protein S8, chloroplastic OS=Cycas t... [more]
RR8_MARPO5.269e-3857.6630S ribosomal protein S8, chloroplastic OS=Marchan... [more]
RR8_HUPLU8.988e-3855.1530S ribosomal protein S8, chloroplastic OS=Huperzi... [more]
RR8_MUSAC1.533e-3775.8930S ribosomal protein S8, chloroplastic (Fragment)... [more]
RK14_LIRTU5.826e-3797.5350S ribosomal protein L14, chloroplastic OS=Liriod... [more]
RK14_EUCGG5.826e-3796.3050S ribosomal protein L14, chloroplastic OS=Eucaly... [more]
RK14_PIPCE1.298e-3696.3050S ribosomal protein L14, chloroplastic OS=Piper ... [more]
RK14_ILLOL1.298e-3696.3050S ribosomal protein L14, chloroplastic OS=Illici... [more]
RK14_COFAR2.214e-3693.8350S ribosomal protein L14, chloroplastic OS=Coffea... [more]
RK14_PHAAO2.891e-3692.5950S ribosomal protein L14, chloroplastic OS=Phalae... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_12B02_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-12B02-D4-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069676 ID=CX069676; Name=CX069676; organism=Citrus sinensis; type=EST; length=877bp
AATCCTCCCTTTTTTTTTCTCACAACATAAAAGTAAGCTCCAAATACAAT
TCGGATAGCAGAATAATTACCATATATAACACAAAATTTCTCCACCGATT
CTTTCCAGTCGAGCCGCTCGGTCTGTCATTATACCCCGAGAAGTAGAGAG
AATTACAATCCCCATCCCATCTAAAATTCTAGGAATTCGTCGATAGTTAA
AATAGATTCGTAGACCGGGTCGACTGATTCGTTTTAAATTTAAAATGGGT
CTATACGGCCCTTTCCTATTCCTTCGATGTCGTAGGGTTAAAACCAAAAA
CTCTTTTTTGTTTTTGTTTTCCACGAGTTTCCTTGCGTTTTCGATAAAAC
CCTCTCGCAAAAGGATTTTAACAACGTTTTCGGTGATGTTAGTAGATGCT
ATTCGAACCGTTCCCTTTCTATTCATGTCAGCATTTCGTATAGAAGTTAT
TATGTCAGCAATAGTGTCCTTGCCCATGATAAACTGAAAATTTTGTTGCT
TCCAAATTTTGATATAATCAACATGTTCTTTTTTTTATGAAAATTATTAA
AAGTATATGCGTGAGACATACTCTACTAAATTTTGATTTATCTATTTTAT
TTTCATACTATCACTATATCGCGGTCCCCTCTTATAATACTTCAGGTGCT
AATGAAACTATTTTAGTAAAATTCAACTGTCTCAATTCCCGGGCGATCGC
ACCAAAAACTCGAGTTCCCTTTGGATTTCCTTCGTGATCAATGACAACTG
CAGCATTGTCATCGTACCGTATTATCATACCGTTATCACGTCTGAGTTCT
TTACAAGTACGTACAATTACAGCTCTGATCACTTCTGATCTTTCTAGAGG
CGTATTGGGTACTGCTTCCTTGATCAC
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