CX069676

Overview
NameCX069676
Unique NameCX069676
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length877
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1652 contig Csv1_Contig1652:767..1643. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX069676 vs. ExPASy Swiss-Prot
Match: RK14_NYMAL (50S ribosomal protein L14, chloroplastic OS=Nymphaea alba GN=rpl14 PE=3 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 2.891e-36
Identity = 77/81 (95.06%), Postives = 79/81 (97.53%), Query Frame = -1 
Query:  635 VIKEAVPNTPLERSEVIRAVIVRTCKELRRDNGMIIRYDDNAAVVIDHEGNPKGTRVFGAIARELRQLNFTKIVSLAPEVL 877
            VIKEAVPN PLERSEVIRAVIVRTCKEL+RDNGMIIRYDDNAAVVID EGNPKGTRVFG+IARELRQLNFTKIVSLAPEVL
Sbjct:   42 VIKEAVPNMPLERSEVIRAVIVRTCKELKRDNGMIIRYDDNAAVVIDQEGNPKGTRVFGSIARELRQLNFTKIVSLAPEVL 122
[Close]
BLAST of CX069676 vs. ExPASy Swiss-Prot
Match: RK14_MANES (50S ribosomal protein L14, chloroplastic OS=Manihot esculenta GN=rpl14 PE=3 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 2.891e-36
Identity = 76/81 (93.83%), Postives = 79/81 (97.53%), Query Frame = -1 
Query:  635 VIKEAVPNTPLERSEVIRAVIVRTCKELRRDNGMIIRYDDNAAVVIDHEGNPKGTRVFGAIARELRQLNFTKIVSLAPEVL 877
            VIKEA PN+PLERSEVIRAVIVRTCKEL+RDNGMIIRYDDNAAVVID EGNPKGTR+FGAIARELRQLNFTKIVSLAPEVL
Sbjct:   42 VIKEAAPNSPLERSEVIRAVIVRTCKELKRDNGMIIRYDDNAAVVIDQEGNPKGTRIFGAIARELRQLNFTKIVSLAPEVL 122
[Close]
BLAST of CX069676 vs. ExPASy Swiss-Prot
Match: RK14_DRIGR (50S ribosomal protein L14, chloroplastic OS=Drimys granadensis GN=rpl14 PE=3 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 2.891e-36
Identity = 77/81 (95.06%), Postives = 79/81 (97.53%), Query Frame = -1 
Query:  635 VIKEAVPNTPLERSEVIRAVIVRTCKELRRDNGMIIRYDDNAAVVIDHEGNPKGTRVFGAIARELRQLNFTKIVSLAPEVL 877
            VIKEAVPN PL+RSEVIRAVIVRTCKEL+RDNGMIIRYDDNAAVVID EGNPKGTRVFGAIARELRQLNFTKIVSLAPEVL
Sbjct:   42 VIKEAVPNMPLQRSEVIRAVIVRTCKELKRDNGMIIRYDDNAAVVIDQEGNPKGTRVFGAIARELRQLNFTKIVSLAPEVL 122
[Close]
BLAST of CX069676 vs. ExPASy Swiss-Prot
Match: RK14_CHLSC (50S ribosomal protein L14, chloroplastic OS=Chloranthus spicatus GN=rpl14 PE=3 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 2.891e-36
Identity = 77/81 (95.06%), Postives = 79/81 (97.53%), Query Frame = -1 
Query:  635 VIKEAVPNTPLERSEVIRAVIVRTCKELRRDNGMIIRYDDNAAVVIDHEGNPKGTRVFGAIARELRQLNFTKIVSLAPEVL 877
            VIKEAVPN PLERSEVIRAVIVRTCKEL+RDNGMIIRYDDNAAVVID EGNP+GTRVFGAIARELRQLNFTKIVSLAPEVL
Sbjct:   42 VIKEAVPNMPLERSEVIRAVIVRTCKELKRDNGMIIRYDDNAAVVIDQEGNPRGTRVFGAIARELRQLNFTKIVSLAPEVL 122
[Close]
BLAST of CX069676 vs. ExPASy Swiss-Prot
Match: RK14_MORIN (50S ribosomal protein L14, chloroplastic OS=Morus indica GN=rpl14 PE=3 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 3.776e-36
Identity = 76/81 (93.83%), Postives = 79/81 (97.53%), Query Frame = -1 
Query:  635 VIKEAVPNTPLERSEVIRAVIVRTCKELRRDNGMIIRYDDNAAVVIDHEGNPKGTRVFGAIARELRQLNFTKIVSLAPEVL 877
            VIKEA+PNTPLERSEVIRAVIVRTCKEL+RDNGMIIRYDDNAAVVID E NPKGTR+FGAIARELRQLNFTKIVSLAPEVL
Sbjct:   42 VIKEAIPNTPLERSEVIRAVIVRTCKELKRDNGMIIRYDDNAAVVIDQERNPKGTRIFGAIARELRQLNFTKIVSLAPEVL 122
[Close]
BLAST of CX069676 vs. ExPASy Swiss-Prot
Match: RK14_CUCSA (50S ribosomal protein L14, chloroplastic OS=Cucumis sativus GN=rpl14 PE=2 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 3.776e-36
Identity = 75/81 (92.59%), Postives = 80/81 (98.77%), Query Frame = -1 
Query:  635 VIKEAVPNTPLERSEVIRAVIVRTCKELRRDNGMIIRYDDNAAVVIDHEGNPKGTRVFGAIARELRQLNFTKIVSLAPEVL 877
            VIK+AVPNTPLERSEVIRAVIVRTCKEL+R+NGMIIRYDDNAAVVID EGNPKGTR+FGAIARELRQLNFTKI+SLAPEVL
Sbjct:   42 VIKKAVPNTPLERSEVIRAVIVRTCKELKRENGMIIRYDDNAAVVIDQEGNPKGTRIFGAIARELRQLNFTKIISLAPEVL 122
[Close]
BLAST of CX069676 vs. ExPASy Swiss-Prot
Match: RK14_CALFG (50S ribosomal protein L14, chloroplastic OS=Calycanthus floridus var. glaucus GN=rpl14 PE=3 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 3.776e-36
Identity = 77/81 (95.06%), Postives = 79/81 (97.53%), Query Frame = -1 
Query:  635 VIKEAVPNTPLERSEVIRAVIVRTCKELRRDNGMIIRYDDNAAVVIDHEGNPKGTRVFGAIARELRQLNFTKIVSLAPEVL 877
            VIKEAVPN PLERSEVIRAVIVRTCKEL+RDNGMIIRYDDNAAVVID EGNPKGTRVFGAIARELR+LNFTKIVSLAPEVL
Sbjct:   42 VIKEAVPNMPLERSEVIRAVIVRTCKELKRDNGMIIRYDDNAAVVIDQEGNPKGTRVFGAIARELRKLNFTKIVSLAPEVL 122
[Close]
BLAST of CX069676 vs. ExPASy Swiss-Prot
Match: RK14_TOBAC (50S ribosomal protein L14, chloroplastic OS=Nicotiana tabacum GN=rpl14 PE=3 SV=2)

HSP 1 Score: 151.754 bits (382), Expect = 4.932e-36
Identity = 75/81 (92.59%), Postives = 79/81 (97.53%), Query Frame = -1 
Query:  635 VIKEAVPNTPLERSEVIRAVIVRTCKELRRDNGMIIRYDDNAAVVIDHEGNPKGTRVFGAIARELRQLNFTKIVSLAPEVL 877
            VIKEAVPN PLERSEV+RAVIVRTCKEL+RDNGMIIRYDDNAAVVID EGNPKGTR+FGAIARELR+LNFTKIVSLAPEVL
Sbjct:   42 VIKEAVPNMPLERSEVVRAVIVRTCKELKRDNGMIIRYDDNAAVVIDQEGNPKGTRIFGAIARELRELNFTKIVSLAPEVL 122
[Close]
BLAST of CX069676 vs. ExPASy Swiss-Prot
Match: RK14_SOLTU (50S ribosomal protein L14, chloroplastic OS=Solanum tuberosum GN=rpl14 PE=3 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 4.932e-36
Identity = 75/81 (92.59%), Postives = 79/81 (97.53%), Query Frame = -1 
Query:  635 VIKEAVPNTPLERSEVIRAVIVRTCKELRRDNGMIIRYDDNAAVVIDHEGNPKGTRVFGAIARELRQLNFTKIVSLAPEVL 877
            VIKEAVPN PLERSEV+RAVIVRTCKEL+RDNGMIIRYDDNAAVVID EGNPKGTR+FGAIARELR+LNFTKIVSLAPEVL
Sbjct:   42 VIKEAVPNMPLERSEVVRAVIVRTCKELKRDNGMIIRYDDNAAVVIDQEGNPKGTRIFGAIARELRELNFTKIVSLAPEVL 122
[Close]
BLAST of CX069676 vs. ExPASy Swiss-Prot
Match: RK14_SOLLC (50S ribosomal protein L14, chloroplastic OS=Solanum lycopersicum GN=rpl14 PE=3 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 4.932e-36
Identity = 75/81 (92.59%), Postives = 79/81 (97.53%), Query Frame = -1 
Query:  635 VIKEAVPNTPLERSEVIRAVIVRTCKELRRDNGMIIRYDDNAAVVIDHEGNPKGTRVFGAIARELRQLNFTKIVSLAPEVL 877
            VIKEAVPN PLERSEV+RAVIVRTCKEL+RDNGMIIRYDDNAAVVID EGNPKGTR+FGAIARELR+LNFTKIVSLAPEVL
Sbjct:   42 VIKEAVPNMPLERSEVVRAVIVRTCKELKRDNGMIIRYDDNAAVVIDQEGNPKGTRIFGAIARELRELNFTKIVSLAPEVL 122
The following BLAST results are available for this feature:
BLAST of CX069676 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RK14_NYMAL2.891e-3695.0650S ribosomal protein L14, chloroplastic OS=Nympha... [more]
RK14_MANES2.891e-3693.8350S ribosomal protein L14, chloroplastic OS=Maniho... [more]
RK14_DRIGR2.891e-3695.0650S ribosomal protein L14, chloroplastic OS=Drimys... [more]
RK14_CHLSC2.891e-3695.0650S ribosomal protein L14, chloroplastic OS=Chlora... [more]
RK14_MORIN3.776e-3693.8350S ribosomal protein L14, chloroplastic OS=Morus ... [more]
RK14_CUCSA3.776e-3692.5950S ribosomal protein L14, chloroplastic OS=Cucumi... [more]
RK14_CALFG3.776e-3695.0650S ribosomal protein L14, chloroplastic OS=Calyca... [more]
RK14_TOBAC4.932e-3692.5950S ribosomal protein L14, chloroplastic OS=Nicoti... [more]
RK14_SOLTU4.932e-3692.5950S ribosomal protein L14, chloroplastic OS=Solanu... [more]
RK14_SOLLC4.932e-3692.5950S ribosomal protein L14, chloroplastic OS=Solanu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_12B02_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-12B02-D4-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069676 ID=CX069676; Name=CX069676; organism=Citrus sinensis; type=EST; length=877bp
AATCCTCCCTTTTTTTTTCTCACAACATAAAAGTAAGCTCCAAATACAAT
TCGGATAGCAGAATAATTACCATATATAACACAAAATTTCTCCACCGATT
CTTTCCAGTCGAGCCGCTCGGTCTGTCATTATACCCCGAGAAGTAGAGAG
AATTACAATCCCCATCCCATCTAAAATTCTAGGAATTCGTCGATAGTTAA
AATAGATTCGTAGACCGGGTCGACTGATTCGTTTTAAATTTAAAATGGGT
CTATACGGCCCTTTCCTATTCCTTCGATGTCGTAGGGTTAAAACCAAAAA
CTCTTTTTTGTTTTTGTTTTCCACGAGTTTCCTTGCGTTTTCGATAAAAC
CCTCTCGCAAAAGGATTTTAACAACGTTTTCGGTGATGTTAGTAGATGCT
ATTCGAACCGTTCCCTTTCTATTCATGTCAGCATTTCGTATAGAAGTTAT
TATGTCAGCAATAGTGTCCTTGCCCATGATAAACTGAAAATTTTGTTGCT
TCCAAATTTTGATATAATCAACATGTTCTTTTTTTTATGAAAATTATTAA
AAGTATATGCGTGAGACATACTCTACTAAATTTTGATTTATCTATTTTAT
TTTCATACTATCACTATATCGCGGTCCCCTCTTATAATACTTCAGGTGCT
AATGAAACTATTTTAGTAAAATTCAACTGTCTCAATTCCCGGGCGATCGC
ACCAAAAACTCGAGTTCCCTTTGGATTTCCTTCGTGATCAATGACAACTG
CAGCATTGTCATCGTACCGTATTATCATACCGTTATCACGTCTGAGTTCT
TTACAAGTACGTACAATTACAGCTCTGATCACTTCTGATCTTTCTAGAGG
CGTATTGGGTACTGCTTCCTTGATCAC
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