CX069665

Overview
NameCX069665
Unique NameCX069665
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length876
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX069665 vs. ExPASy Swiss-Prot
Match: GLPF_ECOL6 (Glycerol uptake facilitator protein OS=Escherichia coli O6 GN=glpF PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.131e-11
Identity = 56/213 (26.29%), Postives = 88/213 (41.31%), Query Frame = -3
Query:  329 VYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAICGAGVVKG------FEGSKNYERLGGGANVVAHGYTKG----------DGLGAEIIGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNKDHAWDDHW---------------IFWVGPFIGAALAA-VYHQIVIRAIP 871
            +Y TAG+SG H+NPAVT  L L       + + ++V Q  GA C A +V G      F+  + +  + G    V    T                 E++ T +L+  + + TD            LAPL IG  + ++  +  P+TG  +NPAR  G  +      AW   W               +   GP +GA + A  Y +++ R +P
Sbjct:   56 IYLTAGVSGAHLNPAVTIALWLFACFDKRKVIPFIVSQVAGAFCAAALVYGLYYNLFFDFEQTHHIVRGSVESVDLAGTFSTYPNPHINFVQAFAVEMVITAILMGLILALTDDGNGVPRGP---LAPLLIGLLIAVIGASMGPLTGFAMNPARDFGPKVF-----AWLAGWGNVAFTGGRDIPYFLVPLFGPIVGAIVGAFAYRKLIGRHLP 260          
BLAST of CX069665 vs. ExPASy Swiss-Prot
Match: GLPF_ECO57 (Glycerol uptake facilitator protein OS=Escherichia coli O157:H7 GN=glpF PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.131e-11
Identity = 56/213 (26.29%), Postives = 88/213 (41.31%), Query Frame = -3
Query:  329 VYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAICGAGVVKG------FEGSKNYERLGGGANVVAHGYTKG----------DGLGAEIIGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNKDHAWDDHW---------------IFWVGPFIGAALAA-VYHQIVIRAIP 871
            +Y TAG+SG H+NPAVT  L L       + + ++V Q  GA C A +V G      F+  + +  + G    V    T                 E++ T +L+  + + TD            LAPL IG  + ++  +  P+TG  +NPAR  G  +      AW   W               +   GP +GA + A  Y +++ R +P
Sbjct:   56 IYLTAGVSGAHLNPAVTIALWLFACFDKRKVIPFIVSQVAGAFCAAALVYGLYYNLFFDFEQTHHIVRGSVESVDLAGTFSTYPNPHINFVQAFAVEMVITAILMGLILALTDDGNGVPRGP---LAPLLIGLLIAVIGASMGPLTGFAMNPARDFGPKVF-----AWLAGWGNVAFTGGRDIPYFLVPLFGPIVGAIVGAFAYRKLIGRHLP 260          
BLAST of CX069665 vs. ExPASy Swiss-Prot
Match: NIP51_ARATH (Probable aquaporin NIP5-1 OS=Arabidopsis thaliana GN=NIP5-1 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.313e-11
Identity = 52/175 (29.71%), Postives = 81/175 (46.29%), Query Frame = -3
Query:  356 LVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAICGAGVVKGFEGSKNYERLGGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFS-ATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNKDHAWDDHWIFWVGPFIGA-ALAAVY 874
            ++  T  ISG H+NP++T      R         Y+  Q   +IC +  +KG      +  + GG  + +   + G     E I TF+L++ V + ATD +       V  LA + +G  V L  L   P TG  +NP R+LG A+       +   W++ V P +GA + AAVY
Sbjct:  124 IILSTGHISGAHLNPSLTIAFAALRHFPWAHVPAYIAAQVSASICASFALKGV----FHPFMSGGVTIPS--VSLGQAFALEFIITFILLFVVTAVATDTRA------VGELAGIAVGATVMLNILVAGPSTGGSMNPVRTLGPAVASGN---YRSLWVYLVAPTLGAISGAAVY 283          
BLAST of CX069665 vs. ExPASy Swiss-Prot
Match: GLPF_BACSU (Glycerol uptake facilitator protein OS=Bacillus subtilis GN=glpF PE=2 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 9.313e-11
Identity = 53/190 (27.89%), Postives = 80/190 (42.11%), Query Frame = -3
Query:  338 YCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAICGAGVV--KGFEGSKNYERLGGGANVVAHG----YTKGDGLGAEIIGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIF-------NKDHAWDDHWIFWVGPFIGAALAAVYHQIVIR 868
            Y   GISG H+NPA+T  L             Y+  Q +GAI GA ++        K+ +       V + G    +T  + L +E+IGTFVLV  + +         +     L PL +GF +  + ++    TG  INPAR LG  I              W   W+  VGP +G +   V++    +
Sbjct:   53 YAVGGISGAHLNPALTIALAFVGDFPWKEVPVYIAAQMIGAIIGAVIIYLHYLPHWKSTDDPAAKLGVFSTGPSIPHTFANVL-SEVIGTFVLVLGILAI------GANQFTEGLNPLIVGFLIVAIGISLGGTTGYAINPARDLGPRIAHAFLPIPGKGSSNWKYAWVPVVGPILGGSFGGVFYNAAFK 235          
BLAST of CX069665 vs. ExPASy Swiss-Prot
Match: AQPM_ARCFU (Probable aquaporin aqpM OS=Archaeoglobus fulgidus GN=aqpM PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.313e-11
Identity = 54/173 (31.21%), Postives = 75/173 (43.35%), Query Frame = -3
Query:  362 LVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAICGAGVVKGFEGSKNYERLGGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAI--IFNKDHAWDDHWIFWVGPFIGAALAA 874
            ++Y    ISG HINPAVT  L    +      V Y+V Q +GA  G+ +     G       G GA     G   G  +  E IGTF+L+  +      +R       P  A L IG  V  +      ITG+ +NPAR+ G  +       + W    I+ +GP +GA  AA
Sbjct:   70 VIYSLGRISGAHINPAVTIALWSIGRFPGREVVPYIVAQFIGAALGSLLFLACVGPAAATVGGLGATAPFPGIGYGQAILTEAIGTFLLMLVIMGVAVDERAP-----PGFAGLVIGLTVGGIITTIGNITGSSLNPARTFGPYLGDSLMGINLWQYFPIYVIGPIVGAVAAA 237          
The following BLAST results are available for this feature:
BLAST of CX069665 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 185
Match NameE-valueIdentityDescription
GLPF_ECOL67.131e-1126.29Glycerol uptake facilitator protein OS=Escherichia... [more]
GLPF_ECO577.131e-1126.29Glycerol uptake facilitator protein OS=Escherichia... [more]
NIP51_ARATH9.313e-1129.71Probable aquaporin NIP5-1 OS=Arabidopsis thaliana ... [more]
GLPF_BACSU9.313e-1127.89Glycerol uptake facilitator protein OS=Bacillus su... [more]
AQPM_ARCFU9.313e-1131.21Probable aquaporin aqpM OS=Archaeoglobus fulgidus ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_12A08_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-12A08-B16-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069665 ID=CX069665; Name=CX069665; organism=Citrus sinensis; type=EST; length=876bp
TTTTTTTTTTTTTTTTTGGGTGGTGAAACTAAGCATATTTCCTAACTTCA
AATGTTTCAATGAATACTCACAATAAGAACCCTTCCAGCAGAATCGACTG
TAATAATCTGAAGATAATAACAGAATAATAGTAAAGACTAAAAAAAGAAT
CCTCCAATCAAAAGCTTAAAAAAAAAATACAGCAAAGCTAGATAATTTAC
ACACACAATTAATTAACATCTTAAACAGTTAAACACCAAATGCACATAAA
CAAAAAGACACGACAAAGAAGATACAAATTAAAAAAAAAAAGGTCCATCA
GCGAACTCTCTTAAGCCCTGGACTTGAAGGGAATGGCCCTGATGACTATC
TGGTGGTACACAGCAGCCAGTGCAGCTCCAATGAATGGTCCAACCCAGAA
GATCCAATGGTCATCCCAGGCATGGTCTTTGTTGAAGATGATGGCAGCTC
CAAGACTCCTAGCTGGGTTGATGCCAGTTCCTGTGATGGGGATGGTGGCC
AGGTGGACCAAGAAAACAGCAAATCCAATGGGGAGGGGGGCCAAAATAGG
GACATGAGAATCTCTGGCGTTTCTCTTGGCATCAGTGGCAGAGAAGACAG
TGTAAACAAGAACAAAGGTTCCAATAATCTCAGCACCAAGACCATCACCC
TTGGTGTAGCCGTGAGCAACAACATTGGCTCCACCACCCAACCTCTCGTA
GTTCTTTGAACCTTCGAATCCCTTGACAACACCAGCACCACAGATGGCAC
CAAGGCACTGCATGACCATGTAGAAGACAGCTCTTGTCAGGGAAAGCTTC
CTCGCTAGCAGCAGACCGAAGGTCACTGCTGGGTTGATGTGTCCTCCTGA
GATACCAGCAGTGCAGTAAACAAGGG
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