CX069663
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX069663 vs. ExPASy Swiss-Prot
Match: TBA3_MOUSE (Tubulin alpha-3 chain OS=Mus musculus GN=Tuba3a PE=1 SV=1) HSP 1 Score: 153.295 bits (386), Expect = 1.714e-36 Identity = 72/211 (34.12%), Postives = 119/211 (56.40%), Query Frame = 3 Query: 3 FGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPP--------RGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 611 + +LN LI +S +T LRF G LN DL + NL+P+PR+HF + +AP+ S + L+V E+T ++ N M DPRHG+Y+ ++RG + K+V+ + ++ K + FV+W P K + PP + A + N+T+I E + R+ +F M+ ++AF+HWY GEGM+E EF+EA ++ L +Y++ Sbjct: 224 YTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEE 434
BLAST of CX069663 vs. ExPASy Swiss-Prot
Match: TBA3C_HUMAN (Tubulin alpha-3C/D chain OS=Homo sapiens GN=TUBA3C PE=1 SV=3) HSP 1 Score: 153.295 bits (386), Expect = 1.714e-36 Identity = 72/211 (34.12%), Postives = 119/211 (56.40%), Query Frame = 3 Query: 3 FGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPP--------RGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 611 + +LN LI +S +T LRF G LN DL + NL+P+PR+HF + +AP+ S + L+V E+T ++ N M DPRHG+Y+ ++RG + K+V+ + ++ K + FV+W P K + PP + A + N+T+I E + R+ +F M+ ++AF+HWY GEGM+E EF+EA ++ L +Y++ Sbjct: 224 YTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEE 434
BLAST of CX069663 vs. ExPASy Swiss-Prot
Match: TBA1A_PIG (Tubulin alpha-1A chain OS=Sus scrofa GN=TUBA1A PE=1 SV=1) HSP 1 Score: 153.295 bits (386), Expect = 1.714e-36 Identity = 73/211 (34.60%), Postives = 118/211 (55.92%), Query Frame = 3 Query: 3 FGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPP--------RGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 611 + +LN LI +S +T LRF G LN DL + NL+P+PR HF + +AP+ S + L+V E+T ++ N M DPRHG+Y+ ++RG + K+V+ + ++ K + FV+W P K + PP + A + N+T+I E + R+ +F M+ ++AF+HWY GEGM+E EF+EA +M L +Y++ Sbjct: 224 YTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRAHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYEPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEE 434
BLAST of CX069663 vs. ExPASy Swiss-Prot
Match: TBA_GIBZE (Tubulin alpha chain OS=Gibberella zeae GN=TUB1 PE=3 SV=2) HSP 1 Score: 152.14 bits (383), Expect = 3.819e-36 Identity = 71/211 (33.65%), Postives = 118/211 (55.92%), Query Frame = 3 Query: 3 FGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRG--------LSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 611 + +LN LI+ +S +T LRF G LN DL + NL+P+PR+HF +V ++P+ S + A +V E+T ++ N M DPRHG+Y+ ++RG + + + ++ K + FV+W P K +C P +S A + N+T+I E + +S +F M ++AF+HWY GEGM+E EF+EA ++ L +Y++ Sbjct: 224 YENLNRLIAQVVSSITASLRFDGSLNVDLNEFQTNLVPYPRIHFPLVAYSPVISAAKAAHEANSVQEMTMSCFEPNNQMVKCDPRHGKYMATCLLYRGDVVPNDAHAAVATLKTKRTIQFVDWCPTGFKLGICYQAPENVPNGDLAKVSRAVCMLSNTTAIAEAWSSLSLKFDLMHSKRAFVHWYVGEGMEEGEFSEAREDLAALERDYEE 434
BLAST of CX069663 vs. ExPASy Swiss-Prot
Match: TBA1_APLCA (Tubulin alpha-1 chain OS=Aplysia californica PE=2 SV=1) HSP 1 Score: 152.14 bits (383), Expect = 3.819e-36 Identity = 71/211 (33.65%), Postives = 119/211 (56.40%), Query Frame = 3 Query: 3 FGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPP--------RGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 611 + +LN LI +S +T LRF G LN DL + NL+P+PR+HF + +AP+ S + L+V E+T ++ N + DPRHG+Y+ ++RG + K+V+ + ++ K + FV+W P K + PP + A + N+T+I E + R+ +F M+ ++AF+HWY GEGM+E EF+EA ++ L +Y++ Sbjct: 224 YTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQLVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEE 434
BLAST of CX069663 vs. ExPASy Swiss-Prot
Match: TBA2_DROME (Tubulin alpha-2 chain OS=Drosophila melanogaster GN=alphaTub85E PE=1 SV=1) HSP 1 Score: 151.369 bits (381), Expect = 6.514e-36 Identity = 73/209 (34.93%), Postives = 116/209 (55.50%), Query Frame = 3 Query: 9 DLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPP--------RGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 611 +LN LI +S +T LRF G LN DL + NL+P+PR+HF + +AP+ S + LTV E+T ++ N M DPR G+Y+ ++RG + K+V+ + ++ K S FV+W P K + PP + A + N+T+I E + R+ +F M+ ++AF+HWY GEGM+E EF EA ++ L +Y++ Sbjct: 226 NLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISVEKAYHEQLTVAEITNACFEPANQMVKCDPRRGKYMACCMLYRGDVVPKDVNAAIATIKTKRSIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFAEAREDLAALEKDYEE 434
BLAST of CX069663 vs. ExPASy Swiss-Prot
Match: TBA3_BOVIN (Tubulin alpha-3 chain OS=Bos taurus GN=TUBA3 PE=2 SV=1) HSP 1 Score: 150.984 bits (380), Expect = 8.508e-36 Identity = 71/211 (33.65%), Postives = 118/211 (55.92%), Query Frame = 3 Query: 3 FGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPP--------RGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 611 + +LN LI +S +T LRF G LN DL + NL+P+PR+HF + +AP+ S + L+V E+T ++ N M DPRHG+Y+ ++RG + K+V+ + ++ K + FV+W P K + PP + A + N+T+I E + R+ + M+ ++AF+HWY GEGM+E EF+EA ++ L +Y++ Sbjct: 224 YTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKLDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEE 434
BLAST of CX069663 vs. ExPASy Swiss-Prot
Match: TBAB_SCHCO (Tubulin alpha-1B chain OS=Schizophyllum commune GN=TUB-1B PE=3 SV=1) HSP 1 Score: 150.214 bits (378), Expect = 1.451e-35 Identity = 75/215 (34.88%), Postives = 122/215 (56.74%), Query Frame = 3 Query: 3 FGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCD-----IP-------PRGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 611 F +LN LI+ +S +T LRF G LN DL + NL+PFPR+HF + +APL S +Q+ +V E+T +++ N M D + G+Y+ ++RG + K+ + +++ K + FV+W P K VC+ +P PR L M S N+T+I + R+ +F M+R++AF+HWY GE M+E EF+EA ++ L +Y++ Sbjct: 222 FTNLNRLIAQVVSSITASLRFDGSLNVDLNEFQTNLVPFPRIHFPLASYAPLLSAPRRQHEQNSVEEMTFSCFESGNQMVKCDAKDGKYMACCLLYRGDVVPKDTQAAVASIKTKRTIQFVDWCPTGFKLGVCNEAPATVPGGDLAKVPRSLCMLS----NTTAIAAAWNRLDYKFDLMYRKRAFVHWYVGEAMEEGEFSEAREDLAALEKDYEE 432
BLAST of CX069663 vs. ExPASy Swiss-Prot
Match: TBAA_SCHCO (Tubulin alpha-1A chain OS=Schizophyllum commune GN=TUB-1A PE=3 SV=1) HSP 1 Score: 149.443 bits (376), Expect = 2.475e-35 Identity = 68/209 (32.54%), Postives = 118/209 (56.46%), Query Frame = 3 Query: 9 DLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPP--------RGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 611 +LN LI+ +S +T LRF G LN DL + NL+PFPR+HF + AP+ S + + +V E+T ++ N M DPR G+Y+ + ++RG + K+ + + ++ K + FV+W P K +C+ PP + + + N+T+I + R+ +F ++ ++AF+HWY GEGM+E EF+EA ++ L +Y++ Sbjct: 225 NLNRLIAQVVSSITASLRFDGSLNVDLNEFQTNLVPFPRIHFPLATLAPIVSVDKAGHESNSVAEMTYSCFEPGNQMVKCDPRDGKYMACALLYRGDVVPKDTNAAVALIKTKRTIQFVDWCPTGFKLGICNEPPAHVPGGDLAKVKRSMCMLSNTTAISSAWSRLDHKFDLLYSKRAFVHWYVGEGMEEGEFSEARQDLAALEKDYEE 433
BLAST of CX069663 vs. ExPASy Swiss-Prot
Match: TBAA_PNECA (Tubulin alpha chain (Fragment) OS=Pneumocystis carinii GN=TUB-A PE=3 SV=1) HSP 1 Score: 149.443 bits (376), Expect = 2.475e-35 Identity = 71/192 (36.98%), Postives = 112/192 (58.33%), Query Frame = 3 Query: 3 FGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPR--------GLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDE 554 + +LN LI+ +S +T LRF G LN DL + NL+P+PR+HF +V +AP+ S + A +V E+T ++ N M DPR+G+Y+ ++RG + TK+V+ + V+ K + FV+W P K VC PP+ + A + N+TSI E + R+ +F M+ ++AF+HWY GEGM+E Sbjct: 21 YTNLNRLIAHVVSSITASLRFDGSLNVDLNEFQTNLVPYPRIHFPLVTYAPVISAAKAVHEANSVSEITNACFEPNNQMVKCDPRNGKYMATCLLYRGDVVTKDVNAAVAAVRTKRTIQFVDWCPTGFKLGVCYQPPQHVPHGDLAKVDRAVCMLSNTTSIAEAWPRLDHKFDLMYSKRAFVHWYVGEGMEE 212 The following BLAST results are available for this feature:
BLAST of CX069663 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 414
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Sequences
The
following sequences are available for this feature:
EST sequence >CX069663 ID=CX069663; Name=CX069663; organism=Citrus sinensis; type=EST; length=885bpback to top |