CX069663

Overview
NameCX069663
Unique NameCX069663
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length885
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX069663 vs. ExPASy Swiss-Prot
Match: TBA4_DROME (Tubulin alpha-4 chain OS=Drosophila melanogaster GN=alphaTub67C PE=1 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 3.233e-35
Identity = 74/211 (35.07%), Postives = 119/211 (56.40%), Query Frame = 3
Query:    3 FGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSV-----CDIPPRGL---SMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 611
            + +LN LI+  +S  T  LRF G +N DL +   NL+PFPR+HF +V +APL S     +    +  LT   +++ NMM   DPR G+++    ++RG +  K+V+  +  +++K    FV+W P   K  +       +P   L   S A   + N+T+I   F  +S +F  MF+++AF+HWY GEGM+E EFTEA  N+  L  ++++
Sbjct:  235 YRNLNRLIAQIVSSTTASLRFSGSMNVDLNEFQTNLVPFPRIHFPLVAYAPLMSAERSAHEQHAITTLTNACFESSNMMVKCDPRAGKFMACCMLYRGDVVPKDVNAAVSAIKSKRHIQFVDWCPTGFKIGINYEKPAFVPDGDLAKTSRACCMLSNTTAISVAFSNLSYKFDLMFKKRAFVHWYVGEGMEEGEFTEARENIAVLERDFEE 445          
BLAST of CX069663 vs. ExPASy Swiss-Prot
Match: TBA3_CHICK (Tubulin alpha-3 chain (Fragment) OS=Gallus gallus PE=3 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 4.223e-35
Identity = 72/211 (34.12%), Postives = 118/211 (55.92%), Query Frame = 3
Query:    3 FGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPP--------RGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 611
            + +LN LI   +S VT  LRF G LN DL +   NL+P+PR+HF +  +A + S     +  L+VPE+T   ++  N M   DPR G+Y+    ++RG +  K+V+  +  ++ + S  FV+W P   K  +   PP          +  A   + N+T+I E + R+  +F  M+ ++AF+HWY GEGM+E EF+EA  ++  L  +Y++
Sbjct:   99 YTNLNRLIGQIVSSVTASLRFNGALNVDLIEFQTNLVPYPRIHFPLTTYARIISAEKAYHEQLSVPEITNACFEFSNQMVKCDPRRGKYMACCLLYRGDVVPKDVNAAIAAIKTRRSIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEE 309          
BLAST of CX069663 vs. ExPASy Swiss-Prot
Match: TBA2_CHICK (Tubulin alpha-2 chain OS=Gallus gallus PE=2 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 4.223e-35
Identity = 72/211 (34.12%), Postives = 116/211 (54.98%), Query Frame = 3
Query:    3 FGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPP--------RGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 611
            + +LN LIS  +S +T  LRF G LN DL +   NL+PFPR+HF +V +AP+ S     +  L+V E+T   ++  N M   DP+ G+Y+    ++RG +  K+V+  +  ++   S  FV+W P   K  +   PP          +  A   + N+T+I E + R+  +F  M+ ++AF+HWY  EGM+E EF EA  ++  L  +Y +
Sbjct:  221 YTNLNRLISQIVSSITASLRFDGALNVDLTEFQTNLVPFPRIHFPLVTYAPIISSDRAYHEQLSVAEITSSCFEPNNQMVKCDPQQGKYMACCMLYRGDVVPKDVNVAIAAIKTNRSLQFVDWCPTGFKVGINYQPPIPTPGGDLAQVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVSEGMEEGEFAEAREDLAALEKDYDE 431          
BLAST of CX069663 vs. ExPASy Swiss-Prot
Match: TBA1_NEUCR (Tubulin alpha-A chain OS=Neurospora crassa GN=tba-1 PE=2 SV=3)

HSP 1 Score: 147.902 bits (372), Expect = 7.203e-35
Identity = 70/213 (32.86%), Postives = 118/213 (55.40%), Query Frame = 3
Query:   12 LNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLSMAS-------------TFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 611
            LN LI+  +S +T  LRF G LN DL +   NL+PFPR+H+ ++ +AP+ S     + +    ELT Q ++  N M   DPR+G+Y+  + ++RG +  ++    +  ++ K+S   VEW P   K  +    P  +  AS             + + N+T+I E + R+  +F  M+ ++AF+HWY GEGM+E EF+EA  ++  L  +Y++
Sbjct:  228 LNRLIAQVVSSITSSLRFDGALNVDLNEFQTNLVPFPRVHYPLISYAPVISATKSAHESFKTSELTLQCFEPNNQMVVCDPRNGKYMAVALLYRGDVVPRDTSAAVAALKAKSSFNLVEWCPTGFKIGINHQKPMSVPTASPADGGLASVDRSVSMLSNTTAIAEAWSRLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLASLEKDYEE 440          
BLAST of CX069663 vs. ExPASy Swiss-Prot
Match: TBA3E_HUMAN (Tubulin alpha-3E chain OS=Homo sapiens GN=TUBA3E PE=1 SV=2)

HSP 1 Score: 147.132 bits (370), Expect = 1.229e-34
Identity = 71/211 (33.65%), Postives = 117/211 (55.45%), Query Frame = 3
Query:    3 FGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPP--------RGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 611
            + +LN LI   +S +T  LRF G LN DL +   NL+P+PR+HF +  +AP+ S     +  L+V E+T   ++  N M   DPRHG+Y+    ++RG +  K+V+  +  ++ K +  FV+W P   K  +   PP          +  A   + N+T+I E + R+  +F  M+ + AF+HWY GEGM+E EF+EA  ++  L  + ++
Sbjct:  224 YTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLVHKFDLMYAKWAFVHWYVGEGMEEGEFSEAREDLAALEKDCEE 434          
BLAST of CX069663 vs. ExPASy Swiss-Prot
Match: TBA2_EMENI (Tubulin alpha-2 chain OS=Emericella nidulans GN=tubB PE=3 SV=2)

HSP 1 Score: 146.362 bits (368), Expect = 2.096e-34
Identity = 70/211 (33.18%), Postives = 120/211 (56.87%), Query Frame = 3
Query:    3 FGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSV-----CDIPPRGLS---MASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 611
            F  LN LI+  +S +T  LRF G LN DL +   NL+PFPR+H+ ++ +AP+ S     + +  V +LT Q  +  N M   DPR+G+Y+  + ++RG    ++  + + +++ K S   VEW P   K  +       +P   L+    + + + N+T+I E + R+  +F  M+ ++AF+HWY GEGM+E EF+EA  ++  L  +Y++
Sbjct:  226 FEHLNRLIAQVVSSITSSLRFDGALNVDLNEFQTNLVPFPRIHYPLISYAPVISSNRSSHESFKVQDLTLQCAEPNNQMVVCDPRNGKYMAVALLYRGDCVPRDCTQAIASLKAKASFNLVEWCPTGFKVGINYQKPARVPGSELAPVDRSVSMLSNTTAISEAWSRLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEE 436          
BLAST of CX069663 vs. ExPASy Swiss-Prot
Match: TBAL3_HUMAN (Tubulin alpha chain-like 3 OS=Homo sapiens GN=TUBAL3 PE=1 SV=2)

HSP 1 Score: 144.821 bits (364), Expect = 6.097e-34
Identity = 70/208 (33.65%), Postives = 117/208 (56.25%), Query Frame = 3
Query:   12 LNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPR---GLSMAST-----FIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 611
            +N L+   +S +T  LRF G LN DL +   NL+P+PR+HF M  FAP+ S     +   +V ++T   +++ N +   DPR G+Y+    ++RG +  KEV+  +   ++++S  FV+W P   K  + + PP    G  +A        + N+T+I E + R+  +F  M+ ++AFLHWY  EGM+E EF EA  ++  L  +Y++
Sbjct:  234 INRLVVQVVSSITASLRFEGPLNVDLIEFQTNLVPYPRIHFPMTAFAPIVSADKAYHEQFSVSDITTACFESSNQLVKCDPRLGKYMACCLLYRGDVVPKEVNAAIAATKSRHSVQFVDWCPTGFKVGINNRPPTVMPGGDLAKVHRSICMLSNTTAIVEAWARLDHKFDLMYAKRAFLHWYLREGMEEAEFLEAREDLAALERDYEE 441          
BLAST of CX069663 vs. ExPASy Swiss-Prot
Match: TBA_DICPU (Tubulin alpha chain (Fragment) OS=Dictyostelium purpureum GN=tuba PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 7.963e-34
Identity = 70/199 (35.18%), Postives = 115/199 (57.79%), Query Frame = 3
Query:    3 FGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSS--YFVEWIPNNVKSSVCDIPP------RGLSMAST-----FIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEME 560
            + +LN LI+  +S +T  LRFPG LN D+  +  NL+PFPRLHF +  +AP+ S+   ++  +TV  +T  ++   N+M    P  G+Y+    M+RG +  KE  + + N++N+ S    FV+W P   K  + +  P       G +MA T      + N+T+I ++F R++ +F  M+ ++AF+HWY GEGM+E E
Sbjct:  133 YTNLNRLIAQVISSLTSSLRFPGPLNLDINDIQTNLVPFPRLHFVLCSYAPVISKEKSEHENITVDAITNSVFSENNIMAKCQPHLGKYMACCLMYRGNIVPKEAQKAVQNIRNEKSKTVSFVDWSPTGFKCGINNSKPTTVLGENGDNMARTEKSVCMLSNTTAISQVFSRINHKFDLMYIKRAFVHWYVGEGMEEGE 331          
BLAST of CX069663 vs. ExPASy Swiss-Prot
Match: TBA1_ENTHI (Tubulin alpha-1 chain OS=Entamoeba histolytica GN=TUB1 PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 1.358e-33
Identity = 76/207 (36.71%), Postives = 123/207 (59.42%), Query Frame = 3
Query:   12 LNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADP-RHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPR---GLSMAST-----FIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEY 605
            LN LI+  MS +T  LRF G LN DL +   NL+PFPR HF M+ +AP+ +      + L+V ELT  ++D  ++M   D    G++++   M+RG +S++EV+  +  ++ +N+  FV W P + K  +   P     G S AST      I N T++ ++F++V++ F  MF ++AF+H Y GEGM+E EFT+A  ++ +L  +Y
Sbjct:  232 LNQLIAQAMSSITASLRFEGTLNVDLNEFPTNLVPFPRDHFAMMSYAPIVTPEKAIRQTLSVQELTSSLFDPNSLMIQCDDINKGKFMSCCMMYRGDVSSREVNLAVSGIKKQNTVPFVGWCPCSFKCGINSQPATAVPGSSYASTARSACMIANHTAMCQVFQKVNQNFDLMFGKRAFVHHYVGEGMEENEFTDARQDLYELEVDY 438          
BLAST of CX069663 vs. ExPASy Swiss-Prot
Match: TBA8_CAEEL (Tubulin alpha-8 chain OS=Caenorhabditis elegans GN=tba-8 PE=2 SV=2)

HSP 1 Score: 143.28 bits (360), Expect = 1.774e-33
Identity = 71/217 (32.72%), Postives = 118/217 (54.38%), Query Frame = 3
Query:    3 FGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSV---CDIPPRGLSMAST-----FIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 629
            + +LN LI+  +S +T  LRF G LN DL +   NL+P+PR+HF +  +AP+ S     +  L+V ++T   ++  N M   DP  G+Y+    ++RG +  K+V+  + +V+ K    FV+W P   K  +     I   G  +A        + N+T+I E + R+  +F  M+ ++AF+HW+ GEGM+E EF EA  ++  L  +Y +    TA
Sbjct:  227 YSNLNRLIAQVVSSITASLRFDGALNVDLNEFQTNLVPYPRIHFPLATYAPVISADRAHHEPLSVQDITHMCFEKANQMVKCDPSAGKYMAVCLLYRGDVVPKDVNAAISSVKAKRGINFVDWCPTGFKVGINYQAPITVEGGDLAKVHRAVCMLSNTTAIAEAWARLDHKFDLMYSKRAFVHWFVGEGMEEGEFMEARDDLAALEKDYAEVSRDTA 443          
The following BLAST results are available for this feature:
BLAST of CX069663 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 414
Match NameE-valueIdentityDescription
TBA4_DROME3.233e-3535.07Tubulin alpha-4 chain OS=Drosophila melanogaster G... [more]
TBA3_CHICK4.223e-3534.12Tubulin alpha-3 chain (Fragment) OS=Gallus gallus ... [more]
TBA2_CHICK4.223e-3534.12Tubulin alpha-2 chain OS=Gallus gallus PE=2 SV=1[more]
TBA1_NEUCR7.203e-3532.86Tubulin alpha-A chain OS=Neurospora crassa GN=tba-... [more]
TBA3E_HUMAN1.229e-3433.65Tubulin alpha-3E chain OS=Homo sapiens GN=TUBA3E P... [more]
TBA2_EMENI2.096e-3433.18Tubulin alpha-2 chain OS=Emericella nidulans GN=tu... [more]
TBAL3_HUMAN6.097e-3433.65Tubulin alpha chain-like 3 OS=Homo sapiens GN=TUBA... [more]
TBA_DICPU7.963e-3435.18Tubulin alpha chain (Fragment) OS=Dictyostelium pu... [more]
TBA1_ENTHI1.358e-3336.71Tubulin alpha-1 chain OS=Entamoeba histolytica GN=... [more]
TBA8_CAEEL1.774e-3332.72Tubulin alpha-8 chain OS=Caenorhabditis elegans GN... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_12A07_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-12A07-B14-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069663 ID=CX069663; Name=CX069663; organism=Citrus sinensis; type=EST; length=885bp
CCTTTGGTGACTTGAACCACTTGATTTCTGCAACCATGAGTGGCGTCACT
TGCTGCCTCAGGTTTCCTGGTCAACTGAACTCTGACCTTCGAAAGCTTGC
TGTTAACTTGATTCCTTTCCCTCGCCTGCACTTCTTCATGGTTGGGTTTG
CTCCCCTTACCTCCCGTGGTTCTCAGCAGTACCGTGCCTTGACAGTCCCA
GAACTTACCCAACAAATGTGGGATGCCAAGAACATGATGTGTGCTGCCGA
CCCAAGGCACGGTCGTTACCTCACTGCTTCTGCCATGTTCAGGGGTAAAA
TGAGCACCAAGGAAGTCGACGAGCAGATGATCAATGTTCAAAACAAAAAC
TCTTCCTACTTTGTGGAGTGGATTCCAAACAATGTGAAGTCCAGTGTTTG
TGACATTCCTCCCAGAGGTCTCTCCATGGCATCCACCTTCATCGGGAACT
CAACATCCATCCAAGAAATGTTCCGAAGAGTGAGTGAGCAATTCACAGCT
ATGTTTAGGAGAAAGGCTTTCCTTCACTGGTACACTGGTGAAGGAATGGA
TGAAATGGAGTTCACTGAAGCTGAGAGCAATATGAATGACCTTGTGTCTG
AGTACCAGCAGTACCAGGATGCCACCGCCGATGAGGAAGGTGAGTACGAA
GATGAGGAAGAGGGAGAAATGGAGCATATTTGAAGAAGTTGTGTATGATG
CATATTTGTCTGTGTAGCTGGTTTTGTCAACCTTGCTTGGGATTGCAAAA
AAATGATCTATGATGTGTTATAGTTTTTCTTTCTCGAGTTTTTTACATCA
AGTAGCAGTAAAGTGTGTGATGGATGATGGGATCGATGAGGATCGACTAT
TGAGGATGGAGAAATTAAAGGATGGATGCATGTTT
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