CX069663
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX069663 vs. ExPASy Swiss-Prot
Match: TBA4_DROME (Tubulin alpha-4 chain OS=Drosophila melanogaster GN=alphaTub67C PE=1 SV=1) HSP 1 Score: 149.058 bits (375), Expect = 3.233e-35 Identity = 74/211 (35.07%), Postives = 119/211 (56.40%), Query Frame = 3 Query: 3 FGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSV-----CDIPPRGL---SMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 611 + +LN LI+ +S T LRF G +N DL + NL+PFPR+HF +V +APL S + + LT +++ NMM DPR G+++ ++RG + K+V+ + +++K FV+W P K + +P L S A + N+T+I F +S +F MF+++AF+HWY GEGM+E EFTEA N+ L ++++ Sbjct: 235 YRNLNRLIAQIVSSTTASLRFSGSMNVDLNEFQTNLVPFPRIHFPLVAYAPLMSAERSAHEQHAITTLTNACFESSNMMVKCDPRAGKFMACCMLYRGDVVPKDVNAAVSAIKSKRHIQFVDWCPTGFKIGINYEKPAFVPDGDLAKTSRACCMLSNTTAISVAFSNLSYKFDLMFKKRAFVHWYVGEGMEEGEFTEARENIAVLERDFEE 445
BLAST of CX069663 vs. ExPASy Swiss-Prot
Match: TBA3_CHICK (Tubulin alpha-3 chain (Fragment) OS=Gallus gallus PE=3 SV=1) HSP 1 Score: 148.673 bits (374), Expect = 4.223e-35 Identity = 72/211 (34.12%), Postives = 118/211 (55.92%), Query Frame = 3 Query: 3 FGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPP--------RGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 611 + +LN LI +S VT LRF G LN DL + NL+P+PR+HF + +A + S + L+VPE+T ++ N M DPR G+Y+ ++RG + K+V+ + ++ + S FV+W P K + PP + A + N+T+I E + R+ +F M+ ++AF+HWY GEGM+E EF+EA ++ L +Y++ Sbjct: 99 YTNLNRLIGQIVSSVTASLRFNGALNVDLIEFQTNLVPYPRIHFPLTTYARIISAEKAYHEQLSVPEITNACFEFSNQMVKCDPRRGKYMACCLLYRGDVVPKDVNAAIAAIKTRRSIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEE 309
BLAST of CX069663 vs. ExPASy Swiss-Prot
Match: TBA2_CHICK (Tubulin alpha-2 chain OS=Gallus gallus PE=2 SV=1) HSP 1 Score: 148.673 bits (374), Expect = 4.223e-35 Identity = 72/211 (34.12%), Postives = 116/211 (54.98%), Query Frame = 3 Query: 3 FGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPP--------RGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 611 + +LN LIS +S +T LRF G LN DL + NL+PFPR+HF +V +AP+ S + L+V E+T ++ N M DP+ G+Y+ ++RG + K+V+ + ++ S FV+W P K + PP + A + N+T+I E + R+ +F M+ ++AF+HWY EGM+E EF EA ++ L +Y + Sbjct: 221 YTNLNRLISQIVSSITASLRFDGALNVDLTEFQTNLVPFPRIHFPLVTYAPIISSDRAYHEQLSVAEITSSCFEPNNQMVKCDPQQGKYMACCMLYRGDVVPKDVNVAIAAIKTNRSLQFVDWCPTGFKVGINYQPPIPTPGGDLAQVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVSEGMEEGEFAEAREDLAALEKDYDE 431
BLAST of CX069663 vs. ExPASy Swiss-Prot
Match: TBA1_NEUCR (Tubulin alpha-A chain OS=Neurospora crassa GN=tba-1 PE=2 SV=3) HSP 1 Score: 147.902 bits (372), Expect = 7.203e-35 Identity = 70/213 (32.86%), Postives = 118/213 (55.40%), Query Frame = 3 Query: 12 LNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLSMAS-------------TFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 611 LN LI+ +S +T LRF G LN DL + NL+PFPR+H+ ++ +AP+ S + + ELT Q ++ N M DPR+G+Y+ + ++RG + ++ + ++ K+S VEW P K + P + AS + + N+T+I E + R+ +F M+ ++AF+HWY GEGM+E EF+EA ++ L +Y++ Sbjct: 228 LNRLIAQVVSSITSSLRFDGALNVDLNEFQTNLVPFPRVHYPLISYAPVISATKSAHESFKTSELTLQCFEPNNQMVVCDPRNGKYMAVALLYRGDVVPRDTSAAVAALKAKSSFNLVEWCPTGFKIGINHQKPMSVPTASPADGGLASVDRSVSMLSNTTAIAEAWSRLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLASLEKDYEE 440
BLAST of CX069663 vs. ExPASy Swiss-Prot
Match: TBA3E_HUMAN (Tubulin alpha-3E chain OS=Homo sapiens GN=TUBA3E PE=1 SV=2) HSP 1 Score: 147.132 bits (370), Expect = 1.229e-34 Identity = 71/211 (33.65%), Postives = 117/211 (55.45%), Query Frame = 3 Query: 3 FGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPP--------RGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 611 + +LN LI +S +T LRF G LN DL + NL+P+PR+HF + +AP+ S + L+V E+T ++ N M DPRHG+Y+ ++RG + K+V+ + ++ K + FV+W P K + PP + A + N+T+I E + R+ +F M+ + AF+HWY GEGM+E EF+EA ++ L + ++ Sbjct: 224 YTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLVHKFDLMYAKWAFVHWYVGEGMEEGEFSEAREDLAALEKDCEE 434
BLAST of CX069663 vs. ExPASy Swiss-Prot
Match: TBA2_EMENI (Tubulin alpha-2 chain OS=Emericella nidulans GN=tubB PE=3 SV=2) HSP 1 Score: 146.362 bits (368), Expect = 2.096e-34 Identity = 70/211 (33.18%), Postives = 120/211 (56.87%), Query Frame = 3 Query: 3 FGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSV-----CDIPPRGLS---MASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 611 F LN LI+ +S +T LRF G LN DL + NL+PFPR+H+ ++ +AP+ S + + V +LT Q + N M DPR+G+Y+ + ++RG ++ + + +++ K S VEW P K + +P L+ + + + N+T+I E + R+ +F M+ ++AF+HWY GEGM+E EF+EA ++ L +Y++ Sbjct: 226 FEHLNRLIAQVVSSITSSLRFDGALNVDLNEFQTNLVPFPRIHYPLISYAPVISSNRSSHESFKVQDLTLQCAEPNNQMVVCDPRNGKYMAVALLYRGDCVPRDCTQAIASLKAKASFNLVEWCPTGFKVGINYQKPARVPGSELAPVDRSVSMLSNTTAISEAWSRLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEE 436
BLAST of CX069663 vs. ExPASy Swiss-Prot
Match: TBAL3_HUMAN (Tubulin alpha chain-like 3 OS=Homo sapiens GN=TUBAL3 PE=1 SV=2) HSP 1 Score: 144.821 bits (364), Expect = 6.097e-34 Identity = 70/208 (33.65%), Postives = 117/208 (56.25%), Query Frame = 3 Query: 12 LNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPR---GLSMAST-----FIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 611 +N L+ +S +T LRF G LN DL + NL+P+PR+HF M FAP+ S + +V ++T +++ N + DPR G+Y+ ++RG + KEV+ + ++++S FV+W P K + + PP G +A + N+T+I E + R+ +F M+ ++AFLHWY EGM+E EF EA ++ L +Y++ Sbjct: 234 INRLVVQVVSSITASLRFEGPLNVDLIEFQTNLVPYPRIHFPMTAFAPIVSADKAYHEQFSVSDITTACFESSNQLVKCDPRLGKYMACCLLYRGDVVPKEVNAAIAATKSRHSVQFVDWCPTGFKVGINNRPPTVMPGGDLAKVHRSICMLSNTTAIVEAWARLDHKFDLMYAKRAFLHWYLREGMEEAEFLEAREDLAALERDYEE 441
BLAST of CX069663 vs. ExPASy Swiss-Prot
Match: TBA_DICPU (Tubulin alpha chain (Fragment) OS=Dictyostelium purpureum GN=tuba PE=3 SV=1) HSP 1 Score: 144.436 bits (363), Expect = 7.963e-34 Identity = 70/199 (35.18%), Postives = 115/199 (57.79%), Query Frame = 3 Query: 3 FGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSS--YFVEWIPNNVKSSVCDIPP------RGLSMAST-----FIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEME 560 + +LN LI+ +S +T LRFPG LN D+ + NL+PFPRLHF + +AP+ S+ ++ +TV +T ++ N+M P G+Y+ M+RG + KE + + N++N+ S FV+W P K + + P G +MA T + N+T+I ++F R++ +F M+ ++AF+HWY GEGM+E E Sbjct: 133 YTNLNRLIAQVISSLTSSLRFPGPLNLDINDIQTNLVPFPRLHFVLCSYAPVISKEKSEHENITVDAITNSVFSENNIMAKCQPHLGKYMACCLMYRGNIVPKEAQKAVQNIRNEKSKTVSFVDWSPTGFKCGINNSKPTTVLGENGDNMARTEKSVCMLSNTTAISQVFSRINHKFDLMYIKRAFVHWYVGEGMEEGE 331
BLAST of CX069663 vs. ExPASy Swiss-Prot
Match: TBA1_ENTHI (Tubulin alpha-1 chain OS=Entamoeba histolytica GN=TUB1 PE=3 SV=1) HSP 1 Score: 143.665 bits (361), Expect = 1.358e-33 Identity = 76/207 (36.71%), Postives = 123/207 (59.42%), Query Frame = 3 Query: 12 LNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADP-RHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPR---GLSMAST-----FIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEY 605 LN LI+ MS +T LRF G LN DL + NL+PFPR HF M+ +AP+ + + L+V ELT ++D ++M D G++++ M+RG +S++EV+ + ++ +N+ FV W P + K + P G S AST I N T++ ++F++V++ F MF ++AF+H Y GEGM+E EFT+A ++ +L +Y Sbjct: 232 LNQLIAQAMSSITASLRFEGTLNVDLNEFPTNLVPFPRDHFAMMSYAPIVTPEKAIRQTLSVQELTSSLFDPNSLMIQCDDINKGKFMSCCMMYRGDVSSREVNLAVSGIKKQNTVPFVGWCPCSFKCGINSQPATAVPGSSYASTARSACMIANHTAMCQVFQKVNQNFDLMFGKRAFVHHYVGEGMEENEFTDARQDLYELEVDY 438
BLAST of CX069663 vs. ExPASy Swiss-Prot
Match: TBA8_CAEEL (Tubulin alpha-8 chain OS=Caenorhabditis elegans GN=tba-8 PE=2 SV=2) HSP 1 Score: 143.28 bits (360), Expect = 1.774e-33 Identity = 71/217 (32.72%), Postives = 118/217 (54.38%), Query Frame = 3 Query: 3 FGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSV---CDIPPRGLSMAST-----FIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 629 + +LN LI+ +S +T LRF G LN DL + NL+P+PR+HF + +AP+ S + L+V ++T ++ N M DP G+Y+ ++RG + K+V+ + +V+ K FV+W P K + I G +A + N+T+I E + R+ +F M+ ++AF+HW+ GEGM+E EF EA ++ L +Y + TA Sbjct: 227 YSNLNRLIAQVVSSITASLRFDGALNVDLNEFQTNLVPYPRIHFPLATYAPVISADRAHHEPLSVQDITHMCFEKANQMVKCDPSAGKYMAVCLLYRGDVVPKDVNAAISSVKAKRGINFVDWCPTGFKVGINYQAPITVEGGDLAKVHRAVCMLSNTTAIAEAWARLDHKFDLMYSKRAFVHWFVGEGMEEGEFMEARDDLAALEKDYAEVSRDTA 443 The following BLAST results are available for this feature:
BLAST of CX069663 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 414
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Sequences
The
following sequences are available for this feature:
EST sequence >CX069663 ID=CX069663; Name=CX069663; organism=Citrus sinensis; type=EST; length=885bpback to top |