CX069663

Overview
NameCX069663
Unique NameCX069663
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length885
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX069663 vs. ExPASy Swiss-Prot
Match: TBG_PHYPA (Tubulin gamma chain OS=Physcomitrella patens GN=TUBG1 PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 9.132e-22
Identity = 63/220 (28.64%), Postives = 115/220 (52.27%), Query Frame = 3
Query:    3 FGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLT-SRGSQQYRALTVPELTQQMWDAKNMMCAADPR-----HGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPP---RGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGM----DEMEFTEAESNMNDLVSEYQQYQDA 623
            F   N L+S  MS  T  LR+PG +N+DL  L  +LIP PR HF M G+ PLT  R +   R  TV ++ +++  AKN+M ++  R       +Y++   + +G++   +V + +  ++ +  + F+EW P +++ ++    P       ++   + + TSI+ +F +   Q+  + +++AFL  Y    M    D  EF E+   + +LV EY+  + A
Sbjct:  225 FAQTNSLVSTVMSASTTTLRYPGYMNNDLVGLVASLIPTPRCHFLMTGYTPLTVERQANAIRKTTVLDVMRRLLQAKNIMVSSYARTKEASQAKYISILNIIQGEVDPTQVHKSLQRIRERKLANFIEWGPASIQVALSRKSPYVQTAHRVSGLMLASHTSIRHLFSKCISQYEKLRKKQAFLDNYRKFPMFADNDLSEFDESREIVQNLVDEYKACESA 444          
BLAST of CX069663 vs. ExPASy Swiss-Prot
Match: TBG_ANEPH (Tubulin gamma chain OS=Anemia phyllitidis GN=TUBG PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 1.193e-21
Identity = 63/220 (28.64%), Postives = 114/220 (51.82%), Query Frame = 3
Query:    3 FGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLT-SRGSQQYRALTVPELTQQMWDAKNMMCAADPR-----HGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPP---RGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGM----DEMEFTEAESNMNDLVSEYQQYQDA 623
            F   N L+S  MS  T  LR+PG +N+DL  L  +LIP PR HF M G+ PLT  R +   R  TV ++ +++  AKN+M ++  R       +Y++   + +G++   +V + +  ++ +  + F+EW P +++ ++    P       ++   + + TSI+ +F +   Q+  + +++AFL  Y    M    D  EF E+   +  LV EY+  + A
Sbjct:  226 FAQTNSLVSTVMSASTTTLRYPGYMNNDLVGLVASLIPTPRCHFLMTGYTPLTVERQANAIRKTTVLDVMRRLLQAKNIMVSSYARTKEASQAKYISILNIIQGEVDPTQVHKSLQRIRERKLANFIEWGPASIQVALSRKSPYVQTAHRVSGLMLASHTSIRHLFSKCINQYEKLRKKQAFLDNYRKFPMFADNDLTEFDESREIVQSLVDEYKACESA 445          
BLAST of CX069663 vs. ExPASy Swiss-Prot
Match: TBG_NEUCR (Tubulin gamma chain OS=Neurospora crassa GN=tub-4 PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 3.470e-21
Identity = 60/217 (27.65%), Postives = 112/217 (51.61%), Query Frame = 3
Query:    3 FGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQ---YRALTVPELTQQMWDAKNMMCAADP-RHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPP---RGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWY--TGEGMDEM-EFTEAESNMNDLVSEYQQYQDA 623
            F   N L+S  MS  T  LR+PG +++DL  +  +LIP PR HF M  + P T    +Q    R  TV ++ +++   KN M +  P +   Y++   + +G +   +V + ++ ++ +  + F+ W P +++ ++    P       ++   + N TSI  +F+R+  Q+  M +R AF+  Y  T    + + EF EA   + DL+++Y+  +DA
Sbjct:  225 FQQTNQLVSTVMSASTTTLRYPGYMHNDLVSILASLIPTPRCHFLMTSYTPFTGDQVEQAKTVRKTTVLDVMRRLLQPKNRMVSTVPGKKSCYISILNVIQGDVDPTDVHKSLLRIRERRLATFIPWGPASIQVALTKRSPYVTMAHRVSGLMLANHTSIATLFKRIVRQYDGMRKRNAFMEAYKKTAPFSENLNEFDEAREVVMDLIADYEAAEDA 441          
BLAST of CX069663 vs. ExPASy Swiss-Prot
Match: TBG2_ORYSJ (Tubulin gamma-2 chain OS=Oryza sativa subsp. japonica GN=TUBG2 PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 3.470e-21
Identity = 63/215 (29.30%), Postives = 111/215 (51.63%), Query Frame = 3
Query:    3 FGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLT-SRGSQQYRALTVPELTQQMWDAKNMMCAADPRH-----GRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLS---MASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTG----EGMDEMEFTEAESNMNDLVSEYQ 608
            F   N L+S  MS  T  LR+PG +N+DL  L  +LIP PR HF M G+ PLT  R     R  TV ++ +++   KN+M ++  R+      +Y++   + +G++   +V E +  ++ +    F+EW P +++ ++    P   +   ++   + N TSI+ +F +   Q+  + +++AFL  Y      E  D  EF E+   +  LV EY+
Sbjct:  225 FAQTNSLVSTVMSASTTTLRYPGYMNNDLVGLLASLIPTPRCHFLMTGYTPLTVERQVNMIRKTTVLDVMRRLLQTKNIMVSSYARNKEASQAKYISILNIIQGEVDPTQVHESLQRIRERKLVNFIEWGPASIQVALSRKSPYVQTTHRVSGLMLANHTSIRHLFSKCLGQYEKLRKKQAFLDNYRKFPMFEDNDLSEFDESREIIESLVDEYK 439          
BLAST of CX069663 vs. ExPASy Swiss-Prot
Match: TBG_RETFI (Tubulin gamma chain OS=Reticulomyxa filosa PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 4.532e-21
Identity = 58/217 (26.73%), Postives = 114/217 (52.53%), Query Frame = 3
Query:    3 FGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQ-QYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNV------KSSVCDIPPRGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYT-----GEGMDEMEFTEAESNMNDLVSEYQQYQ 617
            F + N +IS  M+  T  LR+PG +N+DL  L  +L+P PR HF M  F PL  +G+Q + +  +V ++ +++   KN+M +   + G Y++   + RG +   ++ + +  ++ K    F+ W P ++      +S   ++P R   ++   + N +++  +F R+   +  + +R AFL+ Y       E +D  EF +A+  + +L+ EY+  Q
Sbjct:  224 FKETNSIISTVMAASTTTLRYPGYMNNDLVGLIASLVPTPRAHFLMTSFTPLVIKGAQRRIQKTSVLDVMRRLLQPKNIMVSCGTKKGVYVSILDIIRGDVDPTDIHKSLQRIREKKIVNFIPWGPASIQVALSKQSPYANVPYR---VSGCMMANHSNLGNLFARIIRTYDILRKRNAFLNVYKETPVFSENLD--EFEDAKETITNLIEEYKAIQ 435          
BLAST of CX069663 vs. ExPASy Swiss-Prot
Match: TBG_EMENI (Tubulin gamma chain OS=Emericella nidulans GN=mipA PE=2 SV=2)

HSP 1 Score: 102.064 bits (253), Expect = 4.532e-21
Identity = 60/214 (28.04%), Postives = 111/214 (51.87%), Query Frame = 3
Query:    3 FGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQ---YRALTVPELTQQMWDAKNMMCAADP-RHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPP---RGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGE-----GMDEMEFTEAESNMNDLVSEYQ 608
            F   N L+S  MS  T  LR+PG +++DL  +  +LIP PR HF +  + P T     Q    R  TV ++ +++   KN M + +P +   Y++   + +G+    +V + ++ ++ +  + F+ W P +++ ++    P       ++   + N TS+  +F+R+ +Q+  + +R AFL  Y  E     G+D  EF EA + + DLV EY+
Sbjct:  224 FQQTNRLVSTVMSASTTTLRYPGYMHNDLVGIIASLIPTPRSHFLLTSYTPFTGDNIDQAKTVRKTTVLDVMRRLLQPKNRMVSINPSKSSCYISILNIIQGEADPTDVHKSLLRIRERRLASFIPWGPASIQVALTKKSPYIQNTHRVSGLMLANHTSVATLFKRIVQQYDRLRKRNAFLEQYKKEAPFQDGLD--EFDEARAVVMDLVGEYE 435          
BLAST of CX069663 vs. ExPASy Swiss-Prot
Match: TBG1_HUMAN (Tubulin gamma-1 chain OS=Homo sapiens GN=TUBG1 PE=1 SV=2)

HSP 1 Score: 102.064 bits (253), Expect = 4.532e-21
Identity = 61/215 (28.37%), Postives = 108/215 (50.23%), Query Frame = 3
Query:    3 FGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGS-QQYRALTVPELTQQMWDAKNMMCAAD---PRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVK---SSVCDIPPRGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDAT 626
            F  +N L+S  MS  T  LR+PG +N+DL  L  +LIP PRLHF M G+ PLT+  S    R  TV ++ +++   KN+M +       +  Y+    + +G++   +V + +  ++ +  + F+ W P +++   S      P    ++   + N TSI  +F R   Q+  + +R+AFL  +  E M +  F E +++   +     +Y  AT
Sbjct:  225 FSQINQLVSTIMSASTTTLRYPGYMNNDLIGLIASLIPTPRLHFLMTGYTPLTTDQSVASVRKTTVLDVMRRLLQPKNVMVSTGRDRQTNHCYIAILNIIQGEVDPTQVHKSLQRIRERKLANFIPWGPASIQVALSRKSPYLPSAHRVSGLMMANHTSISSLFERTCRQYDKLRKREAFLEQFRKEDMFKDNFDEMDTSREIVQQLIDEYHAAT 439          
BLAST of CX069663 vs. ExPASy Swiss-Prot
Match: TBG2_ARATH (Tubulin gamma-2 chain OS=Arabidopsis thaliana GN=TUBG2 PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 5.919e-21
Identity = 62/215 (28.84%), Postives = 111/215 (51.63%), Query Frame = 3
Query:    3 FGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLT-SRGSQQYRALTVPELTQQMWDAKNMMCAADPRH-----GRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPP---RGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGM----DEMEFTEAESNMNDLVSEYQ 608
            F   N L+S  MS  T  LR+PG +N+DL  L  +LIP PR HF M G+ PLT  R +   R  TV ++ +++   KN+M ++  R+      +Y++   + +G++   +V E +  ++ +    F++W P +++ ++    P       ++   + + TSI+ +F R   Q+  + +++AFL  Y    M    D  EF E+   +  LV EY+
Sbjct:  225 FAQTNSLVSTVMSASTTTLRYPGYMNNDLVGLLASLIPTPRCHFLMTGYTPLTVERQANVIRKTTVLDVMRRLLQTKNIMVSSYARNKEASQAKYISILNIIQGEVDPTQVHESLQRIRERKLVNFIDWGPASIQVALSKKSPYVQTSHRVSGLMLASHTSIRHLFSRCLSQYDKLRKKQAFLDNYRKFPMFADNDLSEFDESRDIIESLVDEYK 439          
BLAST of CX069663 vs. ExPASy Swiss-Prot
Match: TBG1_ARATH (Tubulin gamma-1 chain OS=Arabidopsis thaliana GN=TUBG1 PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 5.919e-21
Identity = 62/215 (28.84%), Postives = 111/215 (51.63%), Query Frame = 3
Query:    3 FGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLT-SRGSQQYRALTVPELTQQMWDAKNMMCAADPRH-----GRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPP---RGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGM----DEMEFTEAESNMNDLVSEYQ 608
            F   N L+S  MS  T  LR+PG +N+DL  L  +LIP PR HF M G+ PLT  R +   R  TV ++ +++   KN+M ++  R+      +Y++   + +G++   +V E +  ++ +    F+EW P +++ ++    P       ++   + + TSI+ +F +   Q+  + +++AFL  Y    M    D  EF E+   +  LV EY+
Sbjct:  225 FAQTNSLVSTVMSASTTTLRYPGYMNNDLVGLLASLIPTPRCHFLMTGYTPLTVERQANVIRKTTVLDVMRRLLQTKNIMVSSYARNKEASQAKYISILNIIQGEVDPTQVHESLQRIRERKLVNFIEWGPASIQVALSKKSPYVQTAHRVSGLMLASHTSIRHLFSKCLSQYDKLRKKQAFLDNYRKFPMFADNDLSEFDESRDIIESLVDEYK 439          
BLAST of CX069663 vs. ExPASy Swiss-Prot
Match: TBG_SCHJP (Tubulin gamma chain OS=Schizosaccharomyces japonicus GN=tug1 PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 7.731e-21
Identity = 57/212 (26.89%), Postives = 109/212 (51.42%), Query Frame = 3
Query:    3 FGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRAL---TVPELTQQMWDAKNMMCAADP-RHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPP---RGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEM---EFTEAESNMNDLVSEYQ 608
            F   N L+S  MS  T  LR+PG +N+DL  +  +LIP PR HF    + P TS+  +  R +   TV ++ +++   KN M + +P +   +++   + +G+    +V + ++ ++ +  + F+ W P +++ ++    P       ++   + N TSI  +F+R  +Q+  + +R AFL  Y  E + E    EF  +   + DL+ EY+
Sbjct:  225 FHQQNQLVSTVMSASTTTLRYPGYMNNDLVSIIASLIPTPRCHFLSTSYTPFTSQQVEDARTIRKTTVLDVMRRLLQPKNRMVSVNPGKQSCFISILNIIQGEADPNDVHKSLLRIRERKLATFIPWGPASIQVALSKKSPYIKTNHRVSGLMLANHTSIASLFKRTLDQYDRLRKRNAFLDQYRKESIFENSLDEFDNSREVVADLIREYE 436          
The following BLAST results are available for this feature:
BLAST of CX069663 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 414
Match NameE-valueIdentityDescription
TBG_PHYPA9.132e-2228.64Tubulin gamma chain OS=Physcomitrella patens GN=TU... [more]
TBG_ANEPH1.193e-2128.64Tubulin gamma chain OS=Anemia phyllitidis GN=TUBG ... [more]
TBG_NEUCR3.470e-2127.65Tubulin gamma chain OS=Neurospora crassa GN=tub-4 ... [more]
TBG2_ORYSJ3.470e-2129.30Tubulin gamma-2 chain OS=Oryza sativa subsp. japon... [more]
TBG_RETFI4.532e-2126.73Tubulin gamma chain OS=Reticulomyxa filosa PE=2 SV... [more]
TBG_EMENI4.532e-2128.04Tubulin gamma chain OS=Emericella nidulans GN=mipA... [more]
TBG1_HUMAN4.532e-2128.37Tubulin gamma-1 chain OS=Homo sapiens GN=TUBG1 PE=... [more]
TBG2_ARATH5.919e-2128.84Tubulin gamma-2 chain OS=Arabidopsis thaliana GN=T... [more]
TBG1_ARATH5.919e-2128.84Tubulin gamma-1 chain OS=Arabidopsis thaliana GN=T... [more]
TBG_SCHJP7.731e-2126.89Tubulin gamma chain OS=Schizosaccharomyces japonic... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_12A07_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-12A07-B14-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069663 ID=CX069663; Name=CX069663; organism=Citrus sinensis; type=EST; length=885bp
CCTTTGGTGACTTGAACCACTTGATTTCTGCAACCATGAGTGGCGTCACT
TGCTGCCTCAGGTTTCCTGGTCAACTGAACTCTGACCTTCGAAAGCTTGC
TGTTAACTTGATTCCTTTCCCTCGCCTGCACTTCTTCATGGTTGGGTTTG
CTCCCCTTACCTCCCGTGGTTCTCAGCAGTACCGTGCCTTGACAGTCCCA
GAACTTACCCAACAAATGTGGGATGCCAAGAACATGATGTGTGCTGCCGA
CCCAAGGCACGGTCGTTACCTCACTGCTTCTGCCATGTTCAGGGGTAAAA
TGAGCACCAAGGAAGTCGACGAGCAGATGATCAATGTTCAAAACAAAAAC
TCTTCCTACTTTGTGGAGTGGATTCCAAACAATGTGAAGTCCAGTGTTTG
TGACATTCCTCCCAGAGGTCTCTCCATGGCATCCACCTTCATCGGGAACT
CAACATCCATCCAAGAAATGTTCCGAAGAGTGAGTGAGCAATTCACAGCT
ATGTTTAGGAGAAAGGCTTTCCTTCACTGGTACACTGGTGAAGGAATGGA
TGAAATGGAGTTCACTGAAGCTGAGAGCAATATGAATGACCTTGTGTCTG
AGTACCAGCAGTACCAGGATGCCACCGCCGATGAGGAAGGTGAGTACGAA
GATGAGGAAGAGGGAGAAATGGAGCATATTTGAAGAAGTTGTGTATGATG
CATATTTGTCTGTGTAGCTGGTTTTGTCAACCTTGCTTGGGATTGCAAAA
AAATGATCTATGATGTGTTATAGTTTTTCTTTCTCGAGTTTTTTACATCA
AGTAGCAGTAAAGTGTGTGATGGATGATGGGATCGATGAGGATCGACTAT
TGAGGATGGAGAAATTAAAGGATGGATGCATGTTT
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