CX069663

Overview
NameCX069663
Unique NameCX069663
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length885
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9861 contig Csv1_Contig9861:735..1618. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX069663 vs. ExPASy Swiss-Prot
Match: TBB2_PEA (Tubulin beta-2 chain (Fragment) OS=Pisum sativum GN=TUBB2 PE=2 SV=1)

HSP 1 Score: 416.387 bits (1069), Expect = 1.086e-115
Identity = 200/209 (95.69%), Postives = 207/209 (99.04%), Query Frame = 3
Query:    3 FGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 629
            FGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFM+GFAPLTSRGSQQYRAL+VPE+TQQMWD+KNMMCAADPRHGRYLTASA+FRGKMSTKEVDEQM+NVQNKNSSYFVEWIPNNVKS+VCDIPP GL MASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA
Sbjct:  220 FGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMLGFAPLTSRGSQQYRALSVPEITQQMWDSKNMMCAADPRHGRYLTASAIFRGKMSTKEVDEQMMNVQNKNSSYFVEWIPNNVKSTVCDIPPTGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 428          
BLAST of CX069663 vs. ExPASy Swiss-Prot
Match: TBB6_GOSHI (Tubulin beta-6 chain OS=Gossypium hirsutum PE=2 SV=1)

HSP 1 Score: 415.616 bits (1067), Expect = 1.852e-115
Identity = 201/208 (96.63%), Postives = 205/208 (98.56%), Query Frame = 3
Query:    3 FGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDAT 626
            FGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQY +LTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQM+NVQNKNSSYFVEWIPNNVKSSVCDIPPRGL  +STFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV+EYQQYQDAT
Sbjct:  224 FGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYVSLTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMMNVQNKNSSYFVEWIPNNVKSSVCDIPPRGLKTSSTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQYQDAT 431          
BLAST of CX069663 vs. ExPASy Swiss-Prot
Match: TBB2_SOLTU (Tubulin beta-2 chain OS=Solanum tuberosum GN=TUBB2 PE=2 SV=1)

HSP 1 Score: 414.075 bits (1063), Expect = 5.388e-115
Identity = 201/209 (96.17%), Postives = 204/209 (97.61%), Query Frame = 3
Query:    3 FGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 629
            FGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIP PRLHFFMVGFAPLTSRGSQQY +LTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPP GL MASTF+GNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMND V+EYQQYQDATA
Sbjct:  225 FGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPLPRLHFFMVGFAPLTSRGSQQYISLTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPTGLKMASTFVGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDPVAEYQQYQDATA 433          
BLAST of CX069663 vs. ExPASy Swiss-Prot
Match: TBB1_SOLTU (Tubulin beta-1 chain OS=Solanum tuberosum GN=TUBB1 PE=2 SV=1)

HSP 1 Score: 414.075 bits (1063), Expect = 5.388e-115
Identity = 201/209 (96.17%), Postives = 204/209 (97.61%), Query Frame = 3
Query:    3 FGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 629
            FGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIP PRLHFFMVGFAPLTSRGSQQY +LTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPP GL MASTF+GNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMND V+EYQQYQDATA
Sbjct:  225 FGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPLPRLHFFMVGFAPLTSRGSQQYISLTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPTGLKMASTFVGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDPVAEYQQYQDATA 433          
BLAST of CX069663 vs. ExPASy Swiss-Prot
Match: TBB4_ARATH (Tubulin beta-4 chain OS=Arabidopsis thaliana GN=TUBB4 PE=2 SV=2)

HSP 1 Score: 413.69 bits (1062), Expect = 7.037e-115
Identity = 199/209 (95.22%), Postives = 206/209 (98.56%), Query Frame = 3
Query:    3 FGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 629
            FGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQY AL+VPELTQQMWDAKNMMCAADPRHGRYLTASA+FRGK+STKEVDEQM+N+QNKNSSYFVEWIPNNVKSSVCDI P+GL MASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV+EYQQYQDATA
Sbjct:  222 FGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYSALSVPELTQQMWDAKNMMCAADPRHGRYLTASAVFRGKLSTKEVDEQMMNIQNKNSSYFVEWIPNNVKSSVCDIAPKGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQYQDATA 430          
BLAST of CX069663 vs. ExPASy Swiss-Prot
Match: TBB_CICAR (Tubulin beta chain OS=Cicer arietinum GN=TUBB PE=2 SV=1)

HSP 1 Score: 413.305 bits (1061), Expect = 9.191e-115
Identity = 200/209 (95.69%), Postives = 205/209 (98.09%), Query Frame = 3
Query:    3 FGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 629
            FGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQY +LTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQ+INVQNKNSSYFVEWIPNNVKSSVCDIPP+ L M+STFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV+EYQQYQDA A
Sbjct:  224 FGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYVSLTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQIINVQNKNSSYFVEWIPNNVKSSVCDIPPKNLKMSSTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQYQDAIA 432          
BLAST of CX069663 vs. ExPASy Swiss-Prot
Match: TBB1_ARATH (Tubulin beta-1 chain OS=Arabidopsis thaliana GN=TUBB1 PE=2 SV=1)

HSP 1 Score: 413.305 bits (1061), Expect = 9.191e-115
Identity = 200/209 (95.69%), Postives = 205/209 (98.09%), Query Frame = 3
Query:    3 FGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 629
            FGDLNHLISATMSGVTC LRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQY +LTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQ++NVQNKNSSYFVEWIPNNVKSSVCDIPP G+ MASTF+GNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA
Sbjct:  223 FGDLNHLISATMSGVTCSLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYISLTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQILNVQNKNSSYFVEWIPNNVKSSVCDIPPTGIKMASTFVGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 431          
BLAST of CX069663 vs. ExPASy Swiss-Prot
Match: TBB9_ARATH (Tubulin beta-9 chain OS=Arabidopsis thaliana GN=TUBB9 PE=2 SV=1)

HSP 1 Score: 412.535 bits (1059), Expect = 1.568e-114
Identity = 200/208 (96.15%), Postives = 204/208 (98.08%), Query Frame = 3
Query:    3 FGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDAT 626
            FGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQY AL+VPELTQQMWDAKNMMCAADPRHGRYLTASA+FRGKMSTKEVDEQM+NVQNKNSSYFVEWIPNNVKSSVCDI P GL MASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV+EYQQYQDAT
Sbjct:  222 FGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYSALSVPELTQQMWDAKNMMCAADPRHGRYLTASAVFRGKMSTKEVDEQMMNVQNKNSSYFVEWIPNNVKSSVCDIAPTGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQYQDAT 429          
BLAST of CX069663 vs. ExPASy Swiss-Prot
Match: TBB3_GOSHI (Tubulin beta-3 chain OS=Gossypium hirsutum PE=2 SV=1)

HSP 1 Score: 412.149 bits (1058), Expect = 2.048e-114
Identity = 200/203 (98.52%), Postives = 201/203 (99.01%), Query Frame = 3
Query:    3 FGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 611
            FGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKE DEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLSMASTF+GNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS YQQ
Sbjct:  222 FGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEADEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLSMASTFVGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSGYQQ 424          
BLAST of CX069663 vs. ExPASy Swiss-Prot
Match: TBB_POLAG (Tubulin beta chain OS=Polytomella agilis GN=TUBB1 PE=3 SV=1)

HSP 1 Score: 411.764 bits (1057), Expect = 2.674e-114
Identity = 195/209 (93.30%), Postives = 206/209 (98.56%), Query Frame = 3
Query:    3 FGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 629
            FGDLNHLISA MSG+TCCLRFPGQLN+DLRKLAVNLIPFPRLHFFMVGF PLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASA+FRG+MSTKEVDEQM+NVQNKNSSYFVEWIPNNVKSSVCDIPP+GL M++TFIGNST+IQEMF+RVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDA+A
Sbjct:  222 FGDLNHLISAVMSGITCCLRFPGQLNADLRKLAVNLIPFPRLHFFMVGFTPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASALFRGRMSTKEVDEQMLNVQNKNSSYFVEWIPNNVKSSVCDIPPKGLKMSATFIGNSTAIQEMFKRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDASA 430          
The following BLAST results are available for this feature:
BLAST of CX069663 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 414
Match NameE-valueIdentityDescription
TBB2_PEA1.086e-11595.69Tubulin beta-2 chain (Fragment) OS=Pisum sativum G... [more]
TBB6_GOSHI1.852e-11596.63Tubulin beta-6 chain OS=Gossypium hirsutum PE=2 SV... [more]
TBB2_SOLTU5.388e-11596.17Tubulin beta-2 chain OS=Solanum tuberosum GN=TUBB2... [more]
TBB1_SOLTU5.388e-11596.17Tubulin beta-1 chain OS=Solanum tuberosum GN=TUBB1... [more]
TBB4_ARATH7.037e-11595.22Tubulin beta-4 chain OS=Arabidopsis thaliana GN=TU... [more]
TBB_CICAR9.191e-11595.69Tubulin beta chain OS=Cicer arietinum GN=TUBB PE=2... [more]
TBB1_ARATH9.191e-11595.69Tubulin beta-1 chain OS=Arabidopsis thaliana GN=TU... [more]
TBB9_ARATH1.568e-11496.15Tubulin beta-9 chain OS=Arabidopsis thaliana GN=TU... [more]
TBB3_GOSHI2.048e-11498.52Tubulin beta-3 chain OS=Gossypium hirsutum PE=2 SV... [more]
TBB_POLAG2.674e-11493.30Tubulin beta chain OS=Polytomella agilis GN=TUBB1 ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_12A07_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-12A07-B14-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069663 ID=CX069663; Name=CX069663; organism=Citrus sinensis; type=EST; length=885bp
CCTTTGGTGACTTGAACCACTTGATTTCTGCAACCATGAGTGGCGTCACT
TGCTGCCTCAGGTTTCCTGGTCAACTGAACTCTGACCTTCGAAAGCTTGC
TGTTAACTTGATTCCTTTCCCTCGCCTGCACTTCTTCATGGTTGGGTTTG
CTCCCCTTACCTCCCGTGGTTCTCAGCAGTACCGTGCCTTGACAGTCCCA
GAACTTACCCAACAAATGTGGGATGCCAAGAACATGATGTGTGCTGCCGA
CCCAAGGCACGGTCGTTACCTCACTGCTTCTGCCATGTTCAGGGGTAAAA
TGAGCACCAAGGAAGTCGACGAGCAGATGATCAATGTTCAAAACAAAAAC
TCTTCCTACTTTGTGGAGTGGATTCCAAACAATGTGAAGTCCAGTGTTTG
TGACATTCCTCCCAGAGGTCTCTCCATGGCATCCACCTTCATCGGGAACT
CAACATCCATCCAAGAAATGTTCCGAAGAGTGAGTGAGCAATTCACAGCT
ATGTTTAGGAGAAAGGCTTTCCTTCACTGGTACACTGGTGAAGGAATGGA
TGAAATGGAGTTCACTGAAGCTGAGAGCAATATGAATGACCTTGTGTCTG
AGTACCAGCAGTACCAGGATGCCACCGCCGATGAGGAAGGTGAGTACGAA
GATGAGGAAGAGGGAGAAATGGAGCATATTTGAAGAAGTTGTGTATGATG
CATATTTGTCTGTGTAGCTGGTTTTGTCAACCTTGCTTGGGATTGCAAAA
AAATGATCTATGATGTGTTATAGTTTTTCTTTCTCGAGTTTTTTACATCA
AGTAGCAGTAAAGTGTGTGATGGATGATGGGATCGATGAGGATCGACTAT
TGAGGATGGAGAAATTAAAGGATGGATGCATGTTT
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