CX069663

Overview
NameCX069663
Unique NameCX069663
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length885
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX069663 vs. ExPASy Swiss-Prot
Match: TBG2_DROME (Tubulin gamma-2 chain OS=Drosophila melanogaster GN=gammaTub37C PE=1 SV=3)

HSP 1 Score: 93.5893 bits (231), Expect = 1.612e-18
Identity = 59/216 (27.31%), Postives = 112/216 (51.85%), Query Frame = 3
Query:    3 FGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTS--RGSQQYRALTVPELTQQMWDAKNMMCAA-DPRHGR--YLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLS---MASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDAT 626
            F  +N+L+S  MS  T  LR+P  +N++L  L  +LIP P+LHF M G+ PL S        R  TV ++ +++   KNMM +A   +  R  +++   + +G++   +V + +  ++ +  + F+ W P +++ ++    P   S   ++   + N T I  +F+R   Q+  + +R AFL  +  E M + + TE +   + +    Q+Y+ AT
Sbjct:  225 FTQINNLVSTIMSLSTTTLRYPSYMNNNLIGLTASLIPTPQLHFLMTGYTPLMSDCETKTSVRKTTVLDVMRRLLQPKNMMVSALTDKQSRQCFVSILNIIQGEVDPSQVHKSLQRIRERKLANFIPWGPASIQVALPRSSPYVQSAHKVSGLMMANHTGISSLFKRALAQYDKLRKRNAFLDNFRRESMFQDDLTELDIARDTVDCLVQEYEAAT 440          
BLAST of CX069663 vs. ExPASy Swiss-Prot
Match: TBG1_EUPCR (Tubulin gamma-1 chain OS=Euplotes crassus PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 3.591e-18
Identity = 48/198 (24.24%), Postives = 102/198 (51.52%), Query Frame = 3
Query:    3 FGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLT--SRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPP---RGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESN 581
            F  +N ++S  M+  T  LR+PG +N+DL  L  +L+P PR HF M G+ PL+   +     R  TV ++ +++   KN+M     + G Y++   + +G +   +V + +  ++ +  + F+ W P +++ ++    P    G  ++   + N T I+ +F+ + +Q+    +R A+++ +    + E    E +S+
Sbjct:  222 FPQINSIVSTVMAASTTTLRYPGYMNNDLVGLIASLVPTPRCHFLMTGYTPLSLIDQKVTSVRKTTVLDVMRRLLQTKNIMATGAIKKGAYMSILNIIQGDVDPTQVHKSLQRIRERKLANFIPWGPASIQVALSKKSPYMESGHKVSGLMLANHTGIRSIFKVIYDQYRTFRKRDAYMNIFKQTKIFEDNLDEFDSS 419          
BLAST of CX069663 vs. ExPASy Swiss-Prot
Match: TBG_ENTHI (Tubulin gamma chain OS=Entamoeba histolytica PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.365e-17
Identity = 53/202 (26.24%), Postives = 100/202 (49.50%), Query Frame = 3
Query:    9 DLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVK---SSVCDIPPRGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEY 605
            D+N +IS++MS  T  LRFP  L + L  L ++L P    HF M  + PL        R   + ++ +++   +N+M     + G+Y++    F+G +S  E++E +    ++  + FV W    +K   + V  +  RG  M+   + N+TSI+  F+ + + F  MF+++ +L           EF E++  +  ++ EY
Sbjct:  222 DMNSIISSSMSAFTANLRFPSTLYNSLNSLMIHLCPSRFSHFLMTSYTPLRQVNQISSRTSAI-DVMKRLIQPQNIMARTRLKEGKYISMCDFFQGDVSYDEINEALQRFTDRRLAEFVPWNKEAIKVVHTRVSPLVKRGNRMSGMLLANNTSIRYYFQDILKAFDQMFKKRVYLQTDRDNLRKFPEFEESKEIVKCVIEEY 422          
BLAST of CX069663 vs. ExPASy Swiss-Prot
Match: TBG_ASHGO (Tubulin gamma chain OS=Ashbya gossypii GN=TUB4 PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 4.390e-16
Identity = 56/208 (26.92%), Postives = 96/208 (46.15%), Query Frame = 3
Query:   15 NHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTS---RGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLSMASTFI-----GNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEM---EFTEAESNMNDLVSEY 605
            N LI++ MS VT  LRFP  + + L  +   L+P P LHF    F P TS    G++ ++ L+  ++   ++D  N M   D     YL      +G +   +V   ++  Q +    F  W P ++  ++    P   S  S ++      N++SI  +F++    F  +F+R AFLH +    M +    EF E+   +  ++ EY
Sbjct:  229 NQLIASVMSSVTNSLRFPSYMYNSLPSIFSTLVPTPELHFLAPSFTPFTSDFVPGAKDFKRLSAYDVILDLFDKNNSMVTRDTDTPVYLAIYDALQGAVEQSDVTRAILKTQQRIK--FAPWSPTSLHVNLGRKSPYNSSANSDYVSGMMLANTSSIVSVFQKTVSSFDVIFKRGAFLHKFQNGKMFQHGWDEFLESREVIQGVIDEY 434          
The following BLAST results are available for this feature:
BLAST of CX069663 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 414
Match NameE-valueIdentityDescription
TBG2_DROME1.612e-1827.31Tubulin gamma-2 chain OS=Drosophila melanogaster G... [more]
TBG1_EUPCR3.591e-1824.24Tubulin gamma-1 chain OS=Euplotes crassus PE=2 SV=... [more]
TBG_ENTHI1.365e-1726.24Tubulin gamma chain OS=Entamoeba histolytica PE=2 ... [more]
TBG_ASHGO4.390e-1626.92Tubulin gamma chain OS=Ashbya gossypii GN=TUB4 PE=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS08_12A07_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-12A07-B14-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069663 ID=CX069663; Name=CX069663; organism=Citrus sinensis; type=EST; length=885bp
CCTTTGGTGACTTGAACCACTTGATTTCTGCAACCATGAGTGGCGTCACT
TGCTGCCTCAGGTTTCCTGGTCAACTGAACTCTGACCTTCGAAAGCTTGC
TGTTAACTTGATTCCTTTCCCTCGCCTGCACTTCTTCATGGTTGGGTTTG
CTCCCCTTACCTCCCGTGGTTCTCAGCAGTACCGTGCCTTGACAGTCCCA
GAACTTACCCAACAAATGTGGGATGCCAAGAACATGATGTGTGCTGCCGA
CCCAAGGCACGGTCGTTACCTCACTGCTTCTGCCATGTTCAGGGGTAAAA
TGAGCACCAAGGAAGTCGACGAGCAGATGATCAATGTTCAAAACAAAAAC
TCTTCCTACTTTGTGGAGTGGATTCCAAACAATGTGAAGTCCAGTGTTTG
TGACATTCCTCCCAGAGGTCTCTCCATGGCATCCACCTTCATCGGGAACT
CAACATCCATCCAAGAAATGTTCCGAAGAGTGAGTGAGCAATTCACAGCT
ATGTTTAGGAGAAAGGCTTTCCTTCACTGGTACACTGGTGAAGGAATGGA
TGAAATGGAGTTCACTGAAGCTGAGAGCAATATGAATGACCTTGTGTCTG
AGTACCAGCAGTACCAGGATGCCACCGCCGATGAGGAAGGTGAGTACGAA
GATGAGGAAGAGGGAGAAATGGAGCATATTTGAAGAAGTTGTGTATGATG
CATATTTGTCTGTGTAGCTGGTTTTGTCAACCTTGCTTGGGATTGCAAAA
AAATGATCTATGATGTGTTATAGTTTTTCTTTCTCGAGTTTTTTACATCA
AGTAGCAGTAAAGTGTGTGATGGATGATGGGATCGATGAGGATCGACTAT
TGAGGATGGAGAAATTAAAGGATGGATGCATGTTT
back to top