CX069640

Overview
NameCX069640
Unique NameCX069640
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length707
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX069640 vs. ExPASy Swiss-Prot
Match: RL12_HUMAN (60S ribosomal protein L12 OS=Homo sapiens GN=RPL12 PE=1 SV=1)

HSP 1 Score: 218.779 bits (556), Expect = 2.306e-56
Identity = 106/151 (70.20%), Postives = 127/151 (84.11%), Query Frame = -1
Query:  255 YVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQNRQAKVAVVPSAAALVIKALKEPERDRKKTKNIKHNGNITLDDVIEIANVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPKDLQQEITDGDVEIP 707
            Y+R TGGEVGA S+LAPKIGPLGLSPKK+G+DIAK T  DWKGLR+TVKLT+QNRQA++ VVPSA+AL+IKALKEP RDRKK KNIKH+GNIT D+++ IA  MR RS+A++LSGT+KEILGT  SVGC VDG+ P D+  +I  G VE P
Sbjct:   14 YLRCTGGEVGATSALAPKIGPLGLSPKKVGDDIAKATG-DWKGLRITVKLTIQNRQAQIEVVPSASALIIKALKEPPRDRKKQKNIKHSGNITFDEIVNIARQMRHRSLARELSGTIKEILGTAQSVGCNVDGRHPHDIIDDINSGAVECP 163          
BLAST of CX069640 vs. ExPASy Swiss-Prot
Match: RL12_BOVIN (60S ribosomal protein L12 OS=Bos taurus GN=RPL12 PE=2 SV=1)

HSP 1 Score: 218.779 bits (556), Expect = 2.306e-56
Identity = 106/151 (70.20%), Postives = 127/151 (84.11%), Query Frame = -1
Query:  255 YVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQNRQAKVAVVPSAAALVIKALKEPERDRKKTKNIKHNGNITLDDVIEIANVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPKDLQQEITDGDVEIP 707
            Y+R TGGEVGA S+LAPKIGPLGLSPKK+G+DIAK T  DWKGLR+TVKLT+QNRQA++ VVPSA+AL+IKALKEP RDRKK KNIKH+GNIT D+++ IA  MR RS+A++LSGT+KEILGT  SVGC VDG+ P D+  +I  G VE P
Sbjct:   14 YLRCTGGEVGATSALAPKIGPLGLSPKKVGDDIAKATG-DWKGLRITVKLTIQNRQAQIEVVPSASALIIKALKEPPRDRKKQKNIKHSGNITFDEIVNIARQMRHRSLARELSGTIKEILGTAQSVGCNVDGRHPHDIIDDINSGAVECP 163          
BLAST of CX069640 vs. ExPASy Swiss-Prot
Match: RL12_CHILA (60S ribosomal protein L12 OS=Chinchilla lanigera GN=RPL12 PE=2 SV=1)

HSP 1 Score: 216.468 bits (550), Expect = 1.145e-55
Identity = 105/151 (69.54%), Postives = 127/151 (84.11%), Query Frame = -1
Query:  255 YVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQNRQAKVAVVPSAAALVIKALKEPERDRKKTKNIKHNGNITLDDVIEIANVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPKDLQQEITDGDVEIP 707
            Y+R TGGEVGA S+LAPKIGPLGLSPKK+G+DIAK T  DWKGLR+TVKLT+QNRQA++ VVPSA+AL+IKALKEP RDRKK KNIKH+GNIT D+++ IA  MR RS+A++LSGT+KEILGT  SVGC VD + P D+  +I +G VE P
Sbjct:   14 YLRCTGGEVGATSALAPKIGPLGLSPKKVGDDIAKATG-DWKGLRITVKLTIQNRQAQIEVVPSASALIIKALKEPPRDRKKQKNIKHSGNITFDEIVNIARQMRHRSLARELSGTIKEILGTAQSVGCNVDNRHPHDIIDDINNGVVECP 163          
BLAST of CX069640 vs. ExPASy Swiss-Prot
Match: RL12_NEUCR (60S ribosomal protein L12 OS=Neurospora crassa GN=rpl-12 PE=3 SV=1)

HSP 1 Score: 210.69 bits (535), Expect = 6.280e-54
Identity = 102/150 (68.00%), Postives = 127/150 (84.67%), Query Frame = -1
Query:  255 VRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQNRQAKVAVVPSAAALVIKALKEPERDRKKTKNIKHNGNITLDDVIEIANVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPKDLQQEITDGDVEIP 704
            +R TGGEVGA+S+LAPKIGPLGLSPKK+GEDIAK T  DWKGLRVTVKLT+QNRQA V+VVP+A+ALVI+ALKEP RDRKK KNIKHN +++ D+++EIA  MR +S +K+L GTV E+LGT  SVGC VDGK PK +Q+ I  G++++P
Sbjct:   15 LRATGGEVGASSALAPKIGPLGLSPKKVGEDIAKATG-DWKGLRVTVKLTIQNRQAAVSVVPTASALVIRALKEPPRDRKKEKNIKHNKSVSFDEIVEIARTMRFKSFSKELKGTVLEVLGTAFSVGCQVDGKSPKAVQEAIHAGEIDVP 163          
BLAST of CX069640 vs. ExPASy Swiss-Prot
Match: RL12_YEAST (60S ribosomal protein L12 OS=Saccharomyces cerevisiae GN=RPL12A PE=1 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 4.658e-49
Identity = 96/151 (63.58%), Postives = 122/151 (80.79%), Query Frame = -1
Query:  255 YVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQNRQAKVAVVPSAAALVIKALKEPERDRKKTKNIKHNGNITLDDVIEIANVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPKDLQQEITDGDVEIP 707
            Y+R  GGEVGA+++LAPKIGPLGLSPKK+GEDIAK T K++KG++VTV+L +QNRQA  +VVPSA++LVI ALKEP RDRKK KN+KH+GNI LD++IEIA  MR +S  + L+   KEILGT  SVGC VD K+P D+ + I  G++EIP
Sbjct:   14 YLRAVGGEVGASAALAPKIGPLGLSPKKVGEDIAKAT-KEFKGIKVTVQLKIQNRQAAASVVPSASSLVITALKEPPRDRKKDKNVKHSGNIQLDEIIEIARQMRDKSFGRTLASVTKEILGTAQSVGCRVDFKNPHDIIEGINAGEIEIP 163          
BLAST of CX069640 vs. ExPASy Swiss-Prot
Match: RL12_DICDI (60S ribosomal protein L12 OS=Dictyostelium discoideum GN=rpl12 PE=3 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 3.019e-48
Identity = 94/150 (62.67%), Postives = 121/150 (80.67%), Query Frame = -1
Query:  258 YVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQNRQAKVAVVPSAAALVIKALKEPERDRKKTKNIKHNGNITLDDVIEIANVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPKDLQQEITDGDVEI 707
            ++RV GGE GA S+LAPK+GPLG+SPKK+G+DIAK T + WKG++V+VKLT+QNR A   V+PSA+ALVIKALKEP RDRKK KNIKHNGNI L+++ +IA  MR +S+A D  G+V EILGT  SVGC V+GK P+D+Q  I  G++E+
Sbjct:   14 FLRVCGGEAGAMSTLAPKLGPLGVSPKKVGDDIAKAT-QPWKGMKVSVKLTIQNRIAVPEVLPSASALVIKALKEPPRDRKKEKNIKHNGNIPLEEICKIAKTMRFKSLAVDFKGSVLEILGTAHSVGCKVNGKSPRDIQAGIQSGEIEV 162          
BLAST of CX069640 vs. ExPASy Swiss-Prot
Match: RL12_ENCCU (60S ribosomal protein L12 OS=Encephalitozoon cuniculi GN=RPL12 PE=1 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 1.961e-39
Identity = 83/151 (54.97%), Postives = 115/151 (76.16%), Query Frame = -1
Query:  255 VRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQNRQAKVAVVPSAAALVIKALKEPERDRKKTKNIKHNGNITLDDVIEIANVMR-PRSMAKDLSGTVKEILGTCVSVGCTVDGKDPKDLQQEITDGDVEIP 704
            ++V GGEV  A+ LA ++GPLGLS K +GEDI K TA D+K L+V V+L +++R+A V V PS A L+IK+LKEP RDRKK KNI HNG++ + +V++IA + R  RS +  LSGTVKE+LGTC S+GC VDGK PK++ +EI  G++++P
Sbjct:   16 LQVVGGEVPGAT-LAQRVGPLGLSSKVVGEDIKKATA-DYKSLKVHVQLAIKDRKATVEVQPSVATLIIKSLKEPPRDRKKEKNILHNGSLRMTEVVDIARIARSSRSYSNSLSGTVKEVLGTCKSIGCKVDGKCPKEVTREIDAGEIKLP 164          
BLAST of CX069640 vs. ExPASy Swiss-Prot
Match: RL11_ARCFU (50S ribosomal protein L11P OS=Archaeoglobus fulgidus GN=rpl11p PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.109e-21
Identity = 59/152 (38.82%), Postives = 93/152 (61.18%), Query Frame = -1
Query:  255 VRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQN-RQAKVAV-VPSAAALVIKALKEPERDRKKTKNIKHNGNITLDDVIEIANVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPKDLQQEITDGDVEIP 704
            V V GG+      L P IGPLGL+ K++ + I  E  KD++GL V VK+ V++ R  ++ V +P  +AL+ + L   +      + +   GN+T++ ++ IA + R +S++  L   VKE+LGTC S+G TV+GK PK+L + I +G VEIP
Sbjct:    7 VLVPGGQASPGPPLGPAIGPLGLNVKQVVDKI-NEATKDYEGLSVPVKIIVKDDRSFEIEVGIPPVSALIKRELGIEKGASNPGREVV--GNLTMEQLLNIARIKRQQSLSYTLKEVVKEVLGTCNSMGITVEGKSPKELTRMIEEGQVEIP 155          
BLAST of CX069640 vs. ExPASy Swiss-Prot
Match: RL11_THEON (50S ribosomal protein L11P OS=Thermococcus onnurineus (strain NA1) GN=rpl11p PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.561e-20
Identity = 58/151 (38.41%), Postives = 91/151 (60.26%), Query Frame = -1
Query:  270 VRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQNRQAKV----AVVPSAAALVIKALKEPERDRKKTKNIKHN--GNITLDDVIEIANVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPKDLQQEITDG 704
            V V GG+      L P IGPLGL+ K++ ++I K T KD++G++V VK+ V++ + K       VP  + L+ K L  P    K +    H+  GN+T++ VI IA     + +A DL    KE++GT +S+G TV+GKDP+++Q+EI +G
Sbjct:    7 VLVEGGKASPGPPLGPAIGPLGLNVKQVVDEINKAT-KDFEGMQVPVKIIVEDPKKKTFRIEVGVPPVSQLIKKELGIP----KGSSEAGHSPVGNLTMEQVIRIAKAKMDQMLAADLKAAAKEVIGTALSMGVTVEGKDPREVQKEIDEG 152          
BLAST of CX069640 vs. ExPASy Swiss-Prot
Match: RL11_THEAC (50S ribosomal protein L11P OS=Thermoplasma acidophilum GN=rpl11p PE=3 SV=2)

HSP 1 Score: 98.5969 bits (244), Expect = 3.478e-20
Identity = 54/151 (35.76%), Postives = 90/151 (59.60%), Query Frame = -1
Query:  258 VTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQNRQAK----VAVVPSAAALVIKALKEPERDRKKTKNIKHNGNITLDDVIEIANVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPKDLQQEITDGDVEI 698
            V GG+      + P +GPLGL+  ++ ++I ++T K+++G+RV V +TV + + K       +P  +AL+ K L   +   K+ + I   GN TLD ++++A       +A DL     E+LGTCVS+G  VDGKDPK++Q++I  G++ I
Sbjct:    9 VEGGKATTGPPIGPALGPLGLNVAQVVKEINEKT-KEFQGMRVPVTITVVDPETKKYEITVGIPPTSALLKKKLGIEKGAAKRKEAIA--GNATLDQIVDVAKTKMASMLASDLKAATLEVLGTCVSMGINVDGKDPKEVQRQIKAGEISI 156          
The following BLAST results are available for this feature:
BLAST of CX069640 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 64
Match NameE-valueIdentityDescription
RL12_HUMAN2.306e-5670.2060S ribosomal protein L12 OS=Homo sapiens GN=RPL12... [more]
RL12_BOVIN2.306e-5670.2060S ribosomal protein L12 OS=Bos taurus GN=RPL12 P... [more]
RL12_CHILA1.145e-5569.5460S ribosomal protein L12 OS=Chinchilla lanigera G... [more]
RL12_NEUCR6.280e-5468.0060S ribosomal protein L12 OS=Neurospora crassa GN=... [more]
RL12_YEAST4.658e-4963.5860S ribosomal protein L12 OS=Saccharomyces cerevis... [more]
RL12_DICDI3.019e-4862.6760S ribosomal protein L12 OS=Dictyostelium discoid... [more]
RL12_ENCCU1.961e-3954.9760S ribosomal protein L12 OS=Encephalitozoon cunic... [more]
RL11_ARCFU4.109e-2138.8250S ribosomal protein L11P OS=Archaeoglobus fulgid... [more]
RL11_THEON1.561e-2038.4150S ribosomal protein L11P OS=Thermococcus onnurin... [more]
RL11_THEAC3.478e-2035.7650S ribosomal protein L11P OS=Thermoplasma acidoph... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_11H06_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-11H06-P11-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069640 ID=CX069640; Name=CX069640; organism=Citrus sinensis; type=EST; length=707bp
GAAAATTTAAATTTCAAAGATCCAATATACGTTTTCTGAAGCATCATTCA
ACATAAGTCCACTAAATTAAACCTTACATCTCCTAAATTCCAATAATAAA
GCACTCGTTTAAAGCTCGAATAATTGGAGACATCATCAAAATCCTTGTAA
AGATCCAAAACTGATAATAAAAAAAAAGGCACTGATATATAGAAATAAAA
AACAAAAATTAAAATCTAAAATAGACCCCCTCACAAACAGAGTCTTCAAT
CAAGAGGAATTTCGACATCACCATCAGTGATCTCCTGCTGCAGGTCCTTA
GGGTCCTTGCCATCGACCGTACACCCAACAGAAACGCATGTGCCCAAAAT
CTCCTTAACGGTGCCACTCAAATCCTTAGCCATCGACCTGGGCCGCATCA
CATTTGCGATTTCGATGACGTCATCGAGGGTAATGTTGCCGTTGTGCTTG
ATGTTCTTGGTCTTCTTCCTGTCCCTCTCGGGTTCCTTGAGGGCTTTAAT
GACCAGGGCGGCGGCGGAGGGAACGACGGCGACCTTGGCCTGACGGTTCT
GGACGGTGAGCTTGACGGTGACACGTAAGCCCTTCCAGTCCTTGGCGGTT
TCCTTGGCGATGTCCTCTCCGATTTTCTTGGGGGAGAGACCGAGGGGACC
GATCTTTGGGGCGAGGGAACTGGCGGCTCCCACCTCGCCACCGGTCACGC
GGACGTA
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