CX069640

Overview
NameCX069640
Unique NameCX069640
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length707
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX069640 vs. ExPASy Swiss-Prot
Match: RL11_METST (50S ribosomal protein L11P OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rpl11p PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.354e-14
Identity = 45/151 (29.80%), Postives = 83/151 (54.97%), Query Frame = -1
Query:  261 VRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLT--VQNRQAKVAV-VPSAAALVIKALKEPERDRKKTKNIKHNGNITLDDVIEIANVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPKDLQQEITDGDVE 704
            + V GG+      L P IGPLG++  ++ E+I K+TA D+ G++V VK+T  +  +  ++++  P   ALV+  L       +    +    + +++   ++A +     +A D     KE++GTCVS+G  V GKD ++ Q++I +GD +
Sbjct:    8 ILVEGGKATPGPPLGPAIGPLGINMMQVVEEINKKTA-DFGGMKVPVKITADMDTKDFEISIGTPPTTALVLDELGIESGSHEPGTEVA--ADFSVEQAFKVARMKFDDLLANDYKHATKEVIGTCVSMGINVQGKDGRETQKDIDNGDYD 155          
BLAST of CX069640 vs. ExPASy Swiss-Prot
Match: RL11_METS3 (50S ribosomal protein L11P OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=rpl11p PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.298e-14
Identity = 41/148 (27.70%), Postives = 82/148 (55.41%), Query Frame = -1
Query:  270 VRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQNRQAKVAV---VPSAAALVIKALKEPERDRKKTKNIKHNGNITLDDVIEIANVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPKDLQQEITDG 704
            + + GG       L P +GP G++  ++ E+I  ++A D+ G++V VK+++     +  +    P   +L+++ L   +   +   +I    ++ +D  ++IA +     +A D    VKE++GTCVS+G +VDGKDP++ Q+++  G
Sbjct:    8 ILIEGGSATPGPPLGPALGPFGINMMQVVEEINNKSA-DFAGMKVPVKVSIDRDTKEFEIEIGTPPTTSLIMEELGIEKASHEPGADIV--ADLPIDKALKIARMKFDSLLANDYKAGVKEVMGTCVSMGLSVDGKDPREAQKDVDAG 152          
BLAST of CX069640 vs. ExPASy Swiss-Prot
Match: RL11_SULTO (50S ribosomal protein L11P OS=Sulfolobus tokodaii GN=rpl11p PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.084e-13
Identity = 52/150 (34.67%), Postives = 78/150 (52.00%), Query Frame = -1
Query:  270 VTGGEVGAASSLAPKIGPLGLSPKKIGEDIAK--ETAKDWKGLRVTVKLTVQNRQAKVAV---VPSAAALVIKALK--EPERDRKKTKNIKHNGNITLDDVIEIANVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPKDLQQEITDG 698
            V GG V     LAP +  LGL+   +GE + K  +    +KG+ V V L V     K  +   +P+  +L++K     EP  D    K     G+I  +D+I++A + +P+  AK L   VK ILGT  S+G TVD K PK+L + + +G
Sbjct:   10 VEGGNVKPGPPLAPTLSQLGLN---VGEVVKKINDATSQFKGMSVPVTLEVDTDTKKYEIKVGIPTTTSLLLKFANASEPSGDPAHKKV----GDIKFEDIIQVAIMKKPQITAKTLKAAVKSILGTAHSIGLTVDKKSPKELVKAVDEG 152          
BLAST of CX069640 vs. ExPASy Swiss-Prot
Match: RL11_NANEQ (50S ribosomal protein L11P OS=Nanoarchaeum equitans GN=rpl11p PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.044e-12
Identity = 44/146 (30.14%), Postives = 80/146 (54.79%), Query Frame = -1
Query:  270 VTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTV--QNRQAKVAV-VPSAAALVIKALKEPERDRKKTKNIKHNGNITLDDVIEIANVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPKDLQQEITDG 698
            VTGG+      + P + P  ++P K+  +I K T K+++GL V V++ +  + ++ K+ V +P  +AL++KA       ++     +  GN+++ DV+EIA           L   VK +LGT  + G  V+ KDPK++ +E+ +G
Sbjct:   10 VTGGKATPGPPIGPALSPFKINPGKVVAEINKLT-KEYEGLPVPVEIIINPETKEYKIIVGLPPTSALLMKAAGVTRGPQRTVH--EWVGNVSMKDVVEIAKKKIDSMPTSSLKAAVKSVLGTARATGIKVENKDPKEVTKEVDEG 152          
The following BLAST results are available for this feature:
BLAST of CX069640 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 64
Match NameE-valueIdentityDescription
RL11_METST6.354e-1429.8050S ribosomal protein L11P OS=Methanosphaera stadt... [more]
RL11_METS38.298e-1427.7050S ribosomal protein L11P OS=Methanobrevibacter s... [more]
RL11_SULTO1.084e-1334.6750S ribosomal protein L11P OS=Sulfolobus tokodaii ... [more]
RL11_NANEQ2.044e-1230.1450S ribosomal protein L11P OS=Nanoarchaeum equitan... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_11H06_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-11H06-P11-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069640 ID=CX069640; Name=CX069640; organism=Citrus sinensis; type=EST; length=707bp
GAAAATTTAAATTTCAAAGATCCAATATACGTTTTCTGAAGCATCATTCA
ACATAAGTCCACTAAATTAAACCTTACATCTCCTAAATTCCAATAATAAA
GCACTCGTTTAAAGCTCGAATAATTGGAGACATCATCAAAATCCTTGTAA
AGATCCAAAACTGATAATAAAAAAAAAGGCACTGATATATAGAAATAAAA
AACAAAAATTAAAATCTAAAATAGACCCCCTCACAAACAGAGTCTTCAAT
CAAGAGGAATTTCGACATCACCATCAGTGATCTCCTGCTGCAGGTCCTTA
GGGTCCTTGCCATCGACCGTACACCCAACAGAAACGCATGTGCCCAAAAT
CTCCTTAACGGTGCCACTCAAATCCTTAGCCATCGACCTGGGCCGCATCA
CATTTGCGATTTCGATGACGTCATCGAGGGTAATGTTGCCGTTGTGCTTG
ATGTTCTTGGTCTTCTTCCTGTCCCTCTCGGGTTCCTTGAGGGCTTTAAT
GACCAGGGCGGCGGCGGAGGGAACGACGGCGACCTTGGCCTGACGGTTCT
GGACGGTGAGCTTGACGGTGACACGTAAGCCCTTCCAGTCCTTGGCGGTT
TCCTTGGCGATGTCCTCTCCGATTTTCTTGGGGGAGAGACCGAGGGGACC
GATCTTTGGGGCGAGGGAACTGGCGGCTCCCACCTCGCCACCGGTCACGC
GGACGTA
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