CX069639

Overview
NameCX069639
Unique NameCX069639
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length707
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX069639 vs. ExPASy Swiss-Prot
Match: RL11_PICTO (50S ribosomal protein L11P OS=Picrophilus torridus GN=rpl11p PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 9.472e-18
Identity = 54/151 (35.76%), Postives = 91/151 (60.26%), Query Frame = 2
Query:   11 VTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQNRQAK----VAVVPSAAALVIKALKEPERDRKKTKNIKHNGNITLDDVIEIANVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPKDLQQEITDGDVEI 451
            V GG+      L P +GPLGL+  ++ +DI ++T K++ G++V V + V +   K    +  VP  +AL+ K L   +   KK + I   GN TL+ + ++A   R   ++ ++ G V E+LG+ VS+G TVDG+DPK++Q+ I +G++EI
Sbjct:    8 VEGGKATTGPPLGPALGPLGLNLGQVVKDINEKT-KNFAGMQVPVTVNVIDPATKKYEIIVGVPPTSALLKKELGIEKGASKKKEKIA--GNATLEQIKKVAESKRSALLSYNMKGAVLEVLGSAVSLGITVDGRDPKEVQKMIKNGEIEI 155          
BLAST of CX069639 vs. ExPASy Swiss-Prot
Match: RL11_METHJ (50S ribosomal protein L11P OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rpl11p PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.110e-17
Identity = 52/148 (35.14%), Postives = 85/148 (57.43%), Query Frame = 2
Query:    5 VRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQNRQ---AKVAVVPSAAALVIKALKEPERDRKKTKNIKHNGNITLDDVIEIANVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPKDLQQEITDG 439
            V V GG+  A   L P +GPLG++ K + ++I K+TA  + G++V V++ V  ++     V + P+ A ++ +A  E       TK +   G++ L+  + IA +     ++ DL   VKE++GTCVS+G TV GK PKD+ +EI  G
Sbjct:    7 VLVPGGKATAGPPLGPALGPLGINVKAVVDEINKKTAS-FNGMQVPVRVEVDEKKNFTISVGIPPTTALIMKEAGVEKGSGEPNTKIV---GDVPLEAAVTIAKMKLDDMLSYDLKNAVKEVVGTCVSLGITVSGKKPKDMLKEIDSG 150          
BLAST of CX069639 vs. ExPASy Swiss-Prot
Match: RL11_METS5 (50S ribosomal protein L11P OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=rpl11p PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.756e-17
Identity = 61/152 (40.13%), Postives = 82/152 (53.95%), Query Frame = 2
Query:    5 VRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAK--ETAKDWKGLRVTVKLTVQNRQAKVAV---VPSAAALVIK--ALKEPERDRKKTKNIKHNGNITLDDVIEIANVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPKDLQQEITDG 439
            V V GG V     LAP +  LGL+   +GE + K  E    +KG+ V V L V     K  V   VP+  +L++K      P  D +  K     GNI++DDVIE+A   +P   AK+L G VK ILGT  S+G TVD KDPK + +E+ +G
Sbjct:    8 VVVEGGNVKPGPPLAPTLSQLGLN---VGEVVKKINEATSQFKGMTVPVTLDVDTDTKKYEVSVGVPTTTSLLVKKAGASGPSGDPEHKKI----GNISMDDVIEVAISKKPSLTAKELKGAVKSILGTAKSIGLTVDNKDPKLVVREVEEG 152          
BLAST of CX069639 vs. ExPASy Swiss-Prot
Match: RL11_UNCMA (50S ribosomal protein L11P OS=Uncultured methanogenic archaeon RC-I GN=rpl11p PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.599e-17
Identity = 53/147 (36.05%), Postives = 83/147 (56.46%), Query Frame = 2
Query:    5 VRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQ-NRQAKVAV-VPSAAALVIKALKEPERDRKKTKNIKHNGNITLDDVIEIANVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPKDLQQEITDG 439
            V V GG+      L P +GPLG++ KK+ ++I  +T KD+ G+ V VK+ V  +R   V V  P  +ALV+  LK  +     T N    G++T++  I++A + R   ++  L   VKE+ GTCVS+G  ++GK PK+   E+  G
Sbjct:    7 VLVPGGKANPGPPLGPALGPLGINIKKVVDEINNKT-KDYNGMTVPVKVIVDASRNFTVEVGTPPTSALVLSELKLEKGSG--TPNTNFIGSLTIEQAIKVAQMKRDAMLSYTLKNAVKEVAGTCVSLGVMIEGKKPKEFIAEVNAG 150          
BLAST of CX069639 vs. ExPASy Swiss-Prot
Match: RL11_METTH (50S ribosomal protein L11P OS=Methanobacterium thermoautotrophicum GN=rpl11p PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.701e-17
Identity = 51/148 (34.46%), Postives = 89/148 (60.14%), Query Frame = 2
Query:    5 VRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQN--RQAKVAV-VPSAAALVIKALKEPERDRKKTKNIKHNGNITLDDVIEIANVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPKDLQQEITDG 439
            + + GG+      L P IGPLG++  ++ E+I ++TA D++G++V VK+ V    R  +V V  P   AL++  LK  +  +     +    +I+++ V++IA +     ++ D    VKEI+GTCVS+G TV+GKDP+++Q+E+  G
Sbjct:    8 ILIDGGKATPGPPLGPAIGPLGINMMQVVEEINRKTA-DFEGMKVPVKIIVDTDTRDFEVEVGTPPTTALIMDELKLEKGSQDP--GMDKIADISMEQVLKIARMKFDALLSNDYKRAVKEIMGTCVSMGITVNGKDPREVQREVDQG 152          
BLAST of CX069639 vs. ExPASy Swiss-Prot
Match: RL11_METMJ (50S ribosomal protein L11P OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=rpl11p PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 6.140e-17
Identity = 52/150 (34.67%), Postives = 87/150 (58.00%), Query Frame = 2
Query:    5 VRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQNRQAKVAVV--PSAAALVIKALKEPERDRKKTKNIKHNGNITLDDVIEIANVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPKDLQQEITDGDVE 448
            V V GG+  A   L P +GPLG++ K + +DI K+TA ++ G++V V +TV +++     V  P   ALV+K     +   +    +   G++ L+  + IA +     ++ DL   VKE+LGTCVSVG TV+GK P+++ Q + +G+ +
Sbjct:    7 VLVPGGKATAGPPLGPALGPLGINVKAVVDDINKKTA-EFNGMQVPVTVTVDDKKNFTIEVGIPPTTALVMKEAGITKGSTEPGALVA--GDLPLEAAVRIARMKFDGMLSYDLKSAVKEVLGTCVSVGVTVEGKKPREMIQAVNNGEYD 153          
BLAST of CX069639 vs. ExPASy Swiss-Prot
Match: RL11_NITMS (50S ribosomal protein L11P OS=Nitrosopumilus maritimus (strain SCM1) GN=rpl11p PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.047e-16
Identity = 50/146 (34.25%), Postives = 83/146 (56.85%), Query Frame = 2
Query:   11 VTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQNRQAKVAV---VPSAAALVIKALKEPERDRKKTKNIKHNGNITLDDVIEIANVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPKDLQQEITDG 439
            VTGG   A   L P +GPLG++  ++   I  +T KD++G++V V + V +   K  +   +PSAAAL++K  +   +        +  G++T+D V+++AN     S A  L    K I+GTC+++G  V+GK PK++  EI +G
Sbjct:   10 VTGGGASAGPPLGPALGPLGVNIMEVINAINDKT-KDFEGMKVPVTVIVDSDTKKYEIEIGIPSAAALIMK--EAGIQKGSGASGTEWAGDVTMDAVVKVANTKLENSYASSLKSVAKTIVGTCLALGVKVEGKTPKEITAEINEG 152          
BLAST of CX069639 vs. ExPASy Swiss-Prot
Match: RL11_METPE (50S ribosomal protein L11P OS=Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c) GN=rpl11p PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.047e-16
Identity = 52/154 (33.77%), Postives = 90/154 (58.44%), Query Frame = 2
Query:    5 VRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQNRQ-AKVAV-VPSAAALVIKALKEPERDRKKTKNIKHNGNITLDDVIEIANVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPKDLQQEITDGDVEIPLD 460
            V V GG   A   + P +GPLG++ K + +DI K+TA ++ G++V VK+ V +++   ++V +P   ALV+K +   +   +    I   G++ ++  + IA +     ++ +L   VKE++GTCVSVG TVDGK PK++   I+ G  +  L+
Sbjct:    7 VLVPGGRATAGPPIGPALGPLGINVKAVVDDINKKTA-EFNGMQVPVKIEVDDKKNVTISVGIPPTTALVMKEVGIEKGSAEPNSIIV--GDLPIEAAVRIARMKLDDMLSYELKTAVKEVIGTCVSVGVTVDGKKPKEILAAISAGQYDSVLE 157          
BLAST of CX069639 vs. ExPASy Swiss-Prot
Match: RL11_METM7 (50S ribosomal protein L11P OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rpl11p PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.368e-16
Identity = 51/151 (33.77%), Postives = 84/151 (55.63%), Query Frame = 2
Query:    5 VRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQNRQAKVAV---VPSAAALVIKALKEPERDRKKTKNIKHNGNITLDDVIEIANVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPKDLQQEITDGDVE 448
            + V+GG+  A   L P IGPLG++  ++ + I  E  KD+ G+ V VK+ V   +    V   +P A+ALV K L      ++    +   GN+T++ V++IA + +   +A +L    KE++GTCVSVG  V+G  PK+ Q+ +  G  +
Sbjct:    8 ILVSGGKATAGPPLGPAIGPLGVNIMQVVQKI-NEMTKDYDGMSVPVKVIVNTDKRTFEVEVGIPPASALVKKELGITTGSQEPKHQVA--GNLTMEQVVKIAKMKQDAMLAYNLKNASKEVIGTCVSVGVNVEGMTPKEAQKAVDAGQFD 155          
BLAST of CX069639 vs. ExPASy Swiss-Prot
Match: RL11_METM6 (50S ribosomal protein L11P OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=rpl11p PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.368e-16
Identity = 51/151 (33.77%), Postives = 84/151 (55.63%), Query Frame = 2
Query:    5 VRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQNRQAKVAV---VPSAAALVIKALKEPERDRKKTKNIKHNGNITLDDVIEIANVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPKDLQQEITDGDVE 448
            + V+GG+  A   L P IGPLG++  ++ + I  E  KD+ G+ V VK+ V   +    V   +P A+ALV K L      ++    +   GN+T++ V++IA + +   +A +L    KE++GTCVSVG  V+G  PK+ Q+ +  G  +
Sbjct:    8 ILVSGGKATAGPPLGPAIGPLGVNIMQVVQKI-NEMTKDYDGMSVPVKVIVNTDKRTFEVEVGIPPASALVKKELGITTGSQEPKHQVA--GNLTMEQVVKIAKMKQDAMLAYNLKNASKEVIGTCVSVGVNVEGMTPKEAQKAVDAGQFD 155          
The following BLAST results are available for this feature:
BLAST of CX069639 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 64
Match NameE-valueIdentityDescription
RL11_PICTO9.472e-1835.7650S ribosomal protein L11P OS=Picrophilus torridus... [more]
RL11_METHJ2.110e-1735.1450S ribosomal protein L11P OS=Methanospirillum hun... [more]
RL11_METS52.756e-1740.1350S ribosomal protein L11P OS=Metallosphaera sedul... [more]
RL11_UNCMA3.599e-1736.0550S ribosomal protein L11P OS=Uncultured methanoge... [more]
RL11_METTH4.701e-1734.4650S ribosomal protein L11P OS=Methanobacterium the... [more]
RL11_METMJ6.140e-1734.6750S ribosomal protein L11P OS=Methanoculleus maris... [more]
RL11_NITMS1.047e-1634.2550S ribosomal protein L11P OS=Nitrosopumilus marit... [more]
RL11_METPE1.047e-1633.7750S ribosomal protein L11P OS=Methanosphaerula pal... [more]
RL11_METM71.368e-1633.7750S ribosomal protein L11P OS=Methanococcus maripa... [more]
RL11_METM61.368e-1633.7750S ribosomal protein L11P OS=Methanococcus maripa... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_11H06_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-11H06-P11-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069639 ID=CX069639; Name=CX069639; organism=Citrus sinensis; type=EST; length=707bp
GTACGTCCGCGTGACCGGTGGCGAGGTGGGAGCCGCCAGTTCCCTCGCCC
CAAAGATCGGTCCCCTCGGTCTCTCCCCCAAGAAAATCGGAGAGGACATC
GCCAAGGAAACCGCCAAGGACTGGAAGGGCTTACGTGTCACCGTCAAGCT
CACCGTCCAGAACCGTCAGGCCAAGGTCGCCGTCGTTCCCTCCGCCGCCG
CCCTGGTCATTAAAGCCCTCAAGGAACCCGAGAGGGACAGGAAGAAGACC
AAGAACATCAAGCACAACGGCAACATTACCCTCGATGACGTCATCGAAAT
CGCAAATGTGATGCGGCCCAGGTCGATGGCTAAGGATTTGAGTGGCACCG
TTAAGGAGATTTTGGGCACATGCGTTTCTGTTGGGTGTACGGTCGATGGC
AAGGACCCTAAGGACCTGCAGCAGGAGATCACTGATGGTGATGTCGAAAT
TCCTCTTGATTGAAGACTCTGTTTGTGAGGGGGTCTATTTTAGATTTTAA
TTTTTGTTTTTTATTTCTATATATCAGTGCCTTTTTTTTTATTATCAGTT
TTGGATCTTTACAAGGATTTTGATGATGTCTCCAATTATTCGAGCTTTAA
ACGAGTGCTTTATTATTGGAATTTAGGAGATGTAAGGTTTAATTTAGTGG
ACTTATGTTGAATGATGCTTCAGAAAACGTATATTGGATCTTTGAAATTT
AAATTTT
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