CX069639

Overview
NameCX069639
Unique NameCX069639
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length707
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX069639 vs. ExPASy Swiss-Prot
Match: RL11_SULSO (50S ribosomal protein L11P OS=Sulfolobus solfataricus GN=rpl11p PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.580e-15
Identity = 53/152 (34.87%), Postives = 81/152 (53.29%), Query Frame = 2
Query:    5 VRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAK--ETAKDWKGLRVTVKLTVQNRQAKVAV---VPSAAALVIK--ALKEPERDRKKTKNIKHNGNITLDDVIEIANVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPKDLQQEITDG 439
            + V GG V     LAP +  LGL+   +GE + K  E    +KG+ V V + V +   K  +   +P+  AL++K     EP  D    K     GN++L+ VI+IA + +P    K L   +K +LGT  S+G TVD +DPK+L +E+ +G
Sbjct:    8 IMVEGGNVKPGPPLAPTLSQLGLN---VGEVVKKLNEATSSFKGMSVPVTIEVDSSTKKYEIKVGIPTTTALLLKEAGASEPSGDPAHKKI----GNLSLEQVIKIAIMKKPGLTTKSLKAALKSMLGTAKSIGLTVDNRDPKELVKEVEEG 152          
BLAST of CX069639 vs. ExPASy Swiss-Prot
Match: RL11_SULAC (50S ribosomal protein L11P OS=Sulfolobus acidocaldarius GN=rpl11p PE=1 SV=3)

HSP 1 Score: 82.4185 bits (202), Expect = 2.580e-15
Identity = 51/150 (34.00%), Postives = 84/150 (56.00%), Query Frame = 2
Query:    5 VRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQNRQAKVAV---VPSAAALVIKAL--KEPERDRKKTKNIKHNGNITLDDVIEIANVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPKDLQQEITDG 439
            + V GG       L P +  LGL+ +++ + I   TA+ +KG+ V V + + +   K  +   VP+  +L++KA+  +EP  D    K     GN+ L+ + +IA   +P+  AK L+  +K +LGT  S+G TV+GKDPKD+ +EI  G
Sbjct:    8 IMVEGGSAKPGPPLGPTLSQLGLNVQEVVKKINDVTAQ-FKGMSVPVTIEIDSSTKKYDIKVGVPTTTSLLLKAINAQEPSGDPAHKKI----GNLDLEQIADIAIKKKPQLSAKTLTAAIKSLLGTARSIGITVEGKDPKDVIKEIDQG 152          
BLAST of CX069639 vs. ExPASy Swiss-Prot
Match: RL11_METBF (50S ribosomal protein L11P OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rpl11p PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.580e-15
Identity = 47/145 (32.41%), Postives = 86/145 (59.31%), Query Frame = 2
Query:   11 VTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQNRQ-AKVAV-VPSAAALVIKALKEPERDRKKTKNIKHNGNITLDDVIEIANVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPKDLQQEITDG 439
            V GG+      L P +GPLG++ K++ E I ++T +D+ G++V VK+ V +++  ++ V  P  A+L++K L   +        +   GNI++  V +IA + +   ++ DL  T+KE++GTCV +G TV+G + +D Q+ +  G
Sbjct:    9 VPGGKANPGPPLGPALGPLGVNIKEVVEKINEKT-RDYNGMQVPVKVIVDDKKNVEIEVGTPPTASLIMKELGIQKGSGNAGSEVV--GNISISQVAKIARMKKEDVLSYDLKATMKEVMGTCVPMGVTVEGVEARDSQKALDQG 150          
BLAST of CX069639 vs. ExPASy Swiss-Prot
Match: RL11_SULIN (50S ribosomal protein L11P OS=Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2) GN=rpl11p PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.369e-15
Identity = 53/152 (34.87%), Postives = 80/152 (52.63%), Query Frame = 2
Query:    5 VRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAK--ETAKDWKGLRVTVKLTVQNRQAKVAV---VPSAAALVIK--ALKEPERDRKKTKNIKHNGNITLDDVIEIANVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPKDLQQEITDG 439
            + V GG V     LAP +  LGL+   +GE + K  E    +KG+ V V + V +   K  +   +P+  AL++K     EP  D    K     GN++L+ VI+I  + +P    K L   VK +LGT  S+G TV+ KDPK+L +E+ +G
Sbjct:    8 IMVEGGNVKPGPPLAPTLSQLGLN---VGEVVKKLNEATSSFKGMSVPVTIEVDSNTKKYEIKVGIPTTTALLLKEAGASEPSGDPAHKKI----GNLSLEQVIKIVIMKKPGLTTKSLKAAVKSMLGTAKSIGVTVENKDPKELVKEVEEG 152          
BLAST of CX069639 vs. ExPASy Swiss-Prot
Match: RL11_META3 (50S ribosomal protein L11P OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rpl11p PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.505e-15
Identity = 50/151 (33.11%), Postives = 87/151 (57.62%), Query Frame = 2
Query:    5 VRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQ--NRQAKVAV-VPSAAALVIKALKEPERDRKKTKNIKHNGNITLDDVIEIANVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPKDLQQEITDGDVE 448
            V VTGG+  A   L P +GPLG++   + ++I ++T KD+ G+ V VK+ V   +R  ++ V +P  +AL IK     ++   + K I   GN++++  ++IA + +   ++  L    KE++GTCVS G  V+G  P+D Q+ I  G+ +
Sbjct:    8 VLVTGGKATAGPPLGPAVGPLGINIMNVVKEINEKT-KDYAGMSVPVKVIVNTDDRSFEIEVGIPPTSAL-IKTELGLDKGSTEPKAIVA-GNLSMEQAVKIAKMKKDSMLSFTLKNATKEVIGTCVSTGINVEGMSPRDAQKAIDAGEFD 155          
BLAST of CX069639 vs. ExPASy Swiss-Prot
Match: RL11_METTP (50S ribosomal protein L11P OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=rpl11p PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 9.802e-15
Identity = 48/149 (32.21%), Postives = 83/149 (55.70%), Query Frame = 2
Query:   11 VTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQNR---QAKVAVVPSAAALVIKALKEPERDRKKTKNIKHNGNITLDDVIEIANVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPKDLQQEITDGDVE 448
            V+GG+  A   L P +GPLG++   +   I  E  KD  G++V VK+ V++R   + +V   P++A L+ +A  E     KK       G+I++D VI++A + R   ++ +L   V EI+GTC ++G  +DG   K++Q+ +  G  +
Sbjct:    9 VSGGKATAGPPLGPALGPLGVNVAAVVAKI-NELTKDLNGMQVPVKIIVKSRTEFEIEVGTPPTSALLLKEAGVEKGSGDKKN----FVGDISMDQVIKVAEIKRKNLLSSNLKSAVSEIVGTCGTLGIKIDGLTSKEVQKALASGSYD 152          
BLAST of CX069639 vs. ExPASy Swiss-Prot
Match: RL11_DESK1 (50S ribosomal protein L11P OS=Desulfurococcus kamchatkensis (strain 1221n / DSM 18924) GN=rpl11p PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.672e-14
Identity = 51/150 (34.00%), Postives = 85/150 (56.67%), Query Frame = 2
Query:    5 VRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQ--NRQAKVAV-VPSAAALVIK--ALKEPERDRKKTKNIKHNGNITLDDVIEIANVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPKDLQQEITDG 439
            V V GG+      L P + P  ++  ++ + I  +  KD++GL V V++T+    ++ +V V +P+  AL++K    K+P  D    K     GNI+ + V+++A + R    AK L   VK +LGT  S+G TVDGKDPK++Q+ + +G
Sbjct:    8 VMVEGGKATPGPPLGPTLSPYKVNIPQVVKAI-NDATKDFEGLSVPVEITIDIDTKEFEVRVGIPTTTALLMKEAGAKQPTGDPAHQKI----GNISFEQVVKVAILKRDSLTAKTLRAAVKTVLGTARSIGITVDGKDPKEVQKLVDEG 152          
BLAST of CX069639 vs. ExPASy Swiss-Prot
Match: RL11_METB6 (50S ribosomal protein L11P OS=Methanoregula boonei (strain 6A8) GN=rpl11p PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.184e-14
Identity = 50/147 (34.01%), Postives = 81/147 (55.10%), Query Frame = 2
Query:    5 VRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQNR-QAKVAV-VPSAAALVIKALKEPERDRKKTKNIKHNGNITLDDVIEIANVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPKDLQQEITDG 439
            V V GG+  A   L P +GPLG++ K + ++I  +TA  + G++V VK+ V ++ Q  V V +P   AL+ K     +   +   N K  GN+  +  + IA +     ++ +L    KE++GTCVS+G  VDGK PK++  +I  G
Sbjct:    7 VLVPGGKATAGPPLGPALGPLGINVKAVVDEINAKTAS-FNGMQVPVKVEVNDKKQFTVTVGIPPTTALIKKEANIEKGSAEP--NAKVAGNLPFEAAVRIAKMKLEGMLSYELKTATKEVVGTCVSMGVNVDGKRPKEVLADIAAG 150          
BLAST of CX069639 vs. ExPASy Swiss-Prot
Match: RL11_METAC (50S ribosomal protein L11P OS=Methanosarcina acetivorans GN=rpl11p PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.184e-14
Identity = 45/145 (31.03%), Postives = 84/145 (57.93%), Query Frame = 2
Query:   11 VTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQNRQ-AKVAV-VPSAAALVIKALKEPERDRKKTKNIKHNGNITLDDVIEIANVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPKDLQQEITDG 439
            V GG+      L P +GPLG++ K++ E I ++T +D+ G++V VK+ V +++  ++ V  P  A+LV+K L   +        +   GN+T+  V ++A + +   ++ DL   +KE++G+CV +G  V+G   KD Q+ + +G
Sbjct:    9 VPGGKANPGPPLGPALGPLGVNIKEVVEKINEKT-RDYNGMQVPVKVIVDDKKNVEIEVGTPPTASLVMKELGIQKGSGNAGSEVV--GNLTISQVAKVARMKKEDVLSYDLKAAMKEVMGSCVPMGVNVEGMKAKDCQKALDEG 150          
BLAST of CX069639 vs. ExPASy Swiss-Prot
Match: RL11_METBU (50S ribosomal protein L11P OS=Methanococcoides burtonii (strain DSM 6242) GN=rpl11p PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.865e-14
Identity = 43/145 (29.66%), Postives = 83/145 (57.24%), Query Frame = 2
Query:   11 VTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQN-RQAKVAV-VPSAAALVIKALKEPERDRKKTKNIKHNGNITLDDVIEIANVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPKDLQQEITDG 439
            + GG+      L P +GPLG++ K + E I ++T KD+ G++V VK+ V + +  ++ V  P  +AL++K L   +   +    +   GN+ +  V +IA + +   ++  L   +KE++GTCV +G T++  DP++ Q+ + +G
Sbjct:    9 IPGGKANPGPPLGPALGPLGVNIKDVIEKINEKT-KDYNGMQVPVKVIVNDDKSVEIEVGTPPTSALILKELNIEKGSGESGTVVV--GNLEIAQVAKIARMKKDDILSYSLKAAIKEVMGTCVPMGVTIENLDPRECQKAVDEG 150          
The following BLAST results are available for this feature:
BLAST of CX069639 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 64
Match NameE-valueIdentityDescription
RL11_SULSO2.580e-1534.8750S ribosomal protein L11P OS=Sulfolobus solfatari... [more]
RL11_SULAC2.580e-1534.0050S ribosomal protein L11P OS=Sulfolobus acidocald... [more]
RL11_METBF2.580e-1532.4150S ribosomal protein L11P OS=Methanosarcina barke... [more]
RL11_SULIN3.369e-1534.8750S ribosomal protein L11P OS=Sulfolobus islandicu... [more]
RL11_META37.505e-1533.1150S ribosomal protein L11P OS=Methanococcus aeolic... [more]
RL11_METTP9.802e-1532.2150S ribosomal protein L11P OS=Methanosaeta thermop... [more]
RL11_DESK11.672e-1434.0050S ribosomal protein L11P OS=Desulfurococcus kamc... [more]
RL11_METB62.184e-1434.0150S ribosomal protein L11P OS=Methanoregula boonei... [more]
RL11_METAC2.184e-1431.0350S ribosomal protein L11P OS=Methanosarcina aceti... [more]
RL11_METBU4.865e-1429.6650S ribosomal protein L11P OS=Methanococcoides bur... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_11H06_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-11H06-P11-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069639 ID=CX069639; Name=CX069639; organism=Citrus sinensis; type=EST; length=707bp
GTACGTCCGCGTGACCGGTGGCGAGGTGGGAGCCGCCAGTTCCCTCGCCC
CAAAGATCGGTCCCCTCGGTCTCTCCCCCAAGAAAATCGGAGAGGACATC
GCCAAGGAAACCGCCAAGGACTGGAAGGGCTTACGTGTCACCGTCAAGCT
CACCGTCCAGAACCGTCAGGCCAAGGTCGCCGTCGTTCCCTCCGCCGCCG
CCCTGGTCATTAAAGCCCTCAAGGAACCCGAGAGGGACAGGAAGAAGACC
AAGAACATCAAGCACAACGGCAACATTACCCTCGATGACGTCATCGAAAT
CGCAAATGTGATGCGGCCCAGGTCGATGGCTAAGGATTTGAGTGGCACCG
TTAAGGAGATTTTGGGCACATGCGTTTCTGTTGGGTGTACGGTCGATGGC
AAGGACCCTAAGGACCTGCAGCAGGAGATCACTGATGGTGATGTCGAAAT
TCCTCTTGATTGAAGACTCTGTTTGTGAGGGGGTCTATTTTAGATTTTAA
TTTTTGTTTTTTATTTCTATATATCAGTGCCTTTTTTTTTATTATCAGTT
TTGGATCTTTACAAGGATTTTGATGATGTCTCCAATTATTCGAGCTTTAA
ACGAGTGCTTTATTATTGGAATTTAGGAGATGTAAGGTTTAATTTAGTGG
ACTTATGTTGAATGATGCTTCAGAAAACGTATATTGGATCTTTGAAATTT
AAATTTT
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