DR403948

Overview
NameDR403948
Unique NameDR403948
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length628
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR403948 vs. ExPASy Swiss-Prot
Match: COMT1_ROSCH (Caffeic acid 3-O-methyltransferase OS=Rosa chinensis GN=COMT1 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.081e-16
Identity = 58/190 (30.53%), Postives = 95/190 (50.00%), Query Frame = 3
Query:   69 KKVRLAIMELANMISVPMSLTAAIRLHVPDAIWQGGANTPLSASQILTRILPSGGGDAENLQRILRLLTSYGVFSEHR----EFGGERKYSLTEIGKSLVTDAEGLSYAPYVLQHHQDALMSAWPLVHEAVLDPTIEPFVKVHGEPAYSYYGKKPEMNGLMRKAMSGVSVPFMTSVLDGYDGFKGVKRLV 626
            ++  L  M+LA+   +PM L AAI L + + + + G    LS + + +++          L R+LRLL SY + +       +   ER Y L  + K L  + +G+S A   L +    L+ +W  + +AVLD  I PF K +G  A+ Y+G  P  N +  K M+  S   M  +L+ Y GF+G+  +V
Sbjct:   17 EEANLFAMQLASASVLPMVLKAAIELDLLEIMAKAGPGAFLSPNDLASQLPTKNPEAPVMLDRMLRLLASYSILTYSLRTLPDGKVERLYGLGPVCKFLTKNEDGVSIAALCLMNQDKVLVESWYHLKDAVLDGGI-PFNKAYGMTAFDYHGTDPRFNKVFNKGMADHSTITMKKILETYKGFEGLTSIV 205          
BLAST of DR403948 vs. ExPASy Swiss-Prot
Match: COMT2_POPTM (Caffeic acid 3-O-methyltransferase 2 OS=Populus tremuloides GN=OMT2 PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.412e-16
Identity = 57/183 (31.15%), Postives = 89/183 (48.63%), Query Frame = 3
Query:   90 MELANMISVPMSLTAAIRLHVPDAIWQGGANTPLSASQILTRILPSGGGDAENLQRILRLLTSYGVF----SEHREFGGERKYSLTEIGKSLVTDAEGLSYAPYVLQHHQDALMSAWPLVHEAVLDPTIEPFVKVHGEPAYSYYGKKPEMNGLMRKAMSGVSVPFMTSVLDGYDGFKGVKRLV 626
            ++L +   +PM L  AI L + + + + G    L  S I + +          L RILRLL SY +      +  +   ER Y L  + K L  + +G+S +P  L +    LM +W  + +A+L+  I PF K +G  A+ Y+G  P  N +  K MS  S   M  +L+ Y GF+G+  LV
Sbjct:   23 LQLISSSVLPMVLKTAIELDLLEIMAKAGPGALLPPSDIASHLPTKNPNAPVMLDRILRLLASYSILICSLRDLPDGKVERLYGLASVCKFLTRNEDGVSVSPLCLMNQDKVLMESWYHLKDAILEGGI-PFNKAYGMTAFEYHGTDPRFNKVFNKGMSVHSKMAMKKILETYKGFEGLASLV 204          
BLAST of DR403948 vs. ExPASy Swiss-Prot
Match: COMT1_CAPCH (Caffeic acid 3-O-methyltransferase OS=Capsicum chinense GN=COMT PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.145e-16
Identity = 54/183 (29.51%), Postives = 91/183 (49.73%), Query Frame = 3
Query:   90 MELANMISVPMSLTAAIRLHVPDAIWQGGANTPLSASQILTRILPSGGGDAENLQRILRLLTSYGVFS----EHREFGGERKYSLTEIGKSLVTDAEGLSYAPYVLQHHQDALMSAWPLVHEAVLDPTIEPFVKVHGEPAYSYYGKKPEMNGLMRKAMSGVSVPFMTSVLDGYDGFKGVKRLV 626
            M+LA+   +PM L A + L + + + + G    +S S++  ++          L R+ RLL +Y V +       +   ER YSL  + K L  + +G+S AP +L +    LM +W  + +AVLD  + PF K +G   + Y+G  P  N +    MS  +   M  +L+ Y GF+G+  +V
Sbjct:   20 MQLASASVLPMVLKATVELDLLEIMAKSGPGAFISPSELAAQLPTKNPEAPVMLDRMFRLLATYSVLNCTLRTLPDGRVERLYSLAPVCKFLTKNGDGVSIAPILLMNQDKVLMESWYHLTDAVLDGGV-PFNKAYGMTTFEYHGTDPRFNKVFNCGMSDHTTLSMKKILEDYTGFEGLNSIV 201          
BLAST of DR403948 vs. ExPASy Swiss-Prot
Match: IEMT_CLABR ((Iso)eugenol O-methyltransferase OS=Clarkia breweri GN=IEMT1 PE=1 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 9.149e-16
Identity = 60/191 (31.41%), Postives = 97/191 (50.79%), Query Frame = 3
Query:   69 KKVRLAIMELANMISVPMSLTAAIRLHVPDAIWQGGANTPLSASQILTRILPSGGGDAE-NLQRILRLLTSYGVFSEH-REFGG---ERKYSLTEIGKSLVTDAEGLSYAPYVLQHHQDALMSAWPLVHEAVLDPTIEPFVKVHGEPAYSYYGKKPEMNGLMRKAMSGVSVPFMTSVLDGYDGFKGVKRLV 626
            ++  L  M+LA+   +PM+L AAI L V + + +    +   +   +   LP+   +A   L R+LRLL SY V +   RE      ER Y L  + K L  + +G+S AP++L      L+  W  + +A+L+  I PF K +G   + Y+G     N +  K MS  S   M  +L+ Y+GF+G+  +V
Sbjct:   19 EEANLFAMQLASAAVLPMALKAAIELDVLEIMAKSVPPSGYISPAEIAAQLPTTNPEAPVMLDRVLRLLASYSVVTYTLRELPSGKVERLYGLAPVCKFLTKNEDGVSLAPFLLTATDKVLLEPWFYLKDAILEGGI-PFNKAYGMNEFDYHGTDHRFNKVFNKGMSSNSTITMKKILEMYNGFEGLTTIV 208          
BLAST of DR403948 vs. ExPASy Swiss-Prot
Match: CHOMT_MEDSA (Isoliquiritigenin 2'-O-methyltransferase OS=Medicago sativa PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 9.149e-16
Identity = 69/205 (33.66%), Postives = 98/205 (47.80%), Query Frame = 3
Query:   42 EDNECRDGGKKVRLAIMELANMISVPMSLTAAIRLHVPDAIWQGGANTP----LSASQILTRILPSGG-GDAEN-LQRILRLLTSYGVFSEH----REFGGERKYSLTEIGKSLVTDAEGLSYAPYVLQHHQDALMSAWPLVHEAVLDPTIEPFVKVHGEPAYSYYGKKPEMNGLMRKAMSGVSVPFMTSVLDGYDGFKGVKRLV 626
            ED+ C        L+ M L   +  P  L AAI L++ + I +    TP    +S S+I +++  S    D  N L R+LRLL SY V +       + G ER Y L+ +GK LV D      A +       AL+  W    EAV+D  I+ F  VHG   Y + GK  +MN +  K+M  V    M  +L+ Y GF+G+  LV
Sbjct:   21 EDSAC--------LSAMVLTTNLVYPAVLNAAIDLNLFEIIAKA---TPPGAFMSPSEIASKLPASTQHSDLPNRLDRMLRLLASYSVLTSTTRTIEDGGAERVYGLSMVGKYLVPDESRGYLASFTTFLCYPALLQVWMNFKEAVVDEDIDLFKNVHGVTKYEFMGKDKKMNQIFNKSMVDVCATEMKRMLEIYTGFEGISTLV 214          
BLAST of DR403948 vs. ExPASy Swiss-Prot
Match: IMT1_MESCR (Inositol 4-methyltransferase OS=Mesembryanthemum crystallinum GN=IMT1 PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.321e-14
Identity = 52/180 (28.89%), Postives = 87/180 (48.33%), Query Frame = 3
Query:   96 LANMISVPMSLTAAIRLHVPDAIWQGGANTPLSASQILTRILPSGGGDAENLQRILRLLTSYGVFS---EHREFGGERKYSLTEIGKSLVTDAEGLSYAPYVLQHHQDALMSAWPLVHEAVLDPTIEPFVKVHGEPAYSYYGKKPEMNGLMRKAMSGVSVPFMTSVLDGYDGFKGVKRLV 626
            LAN  + PM L +A  L + D   + G    +S S+I ++I          L R+LRLL S+ V +   +  E G +R Y    +   L ++    S  P ++ HH   +M +W  +++ +L+  + PF + HG   + Y G     N +  + M+  ++  M  +LD Y+GF  VK LV
Sbjct:   28 LANAAAFPMILKSAFELKILDIFSKAGEGVFVSTSEIASQIGAKNPNAPVLLDRMLRLLASHSVLTCKLQKGEGGSQRVYGPAPLCNYLASNDGQGSLGPLLVLHHDKVMMESWFHLNDYILEGGV-PFKRAHGMIQFDYTGTDERFNHVFNQGMAHHTILVMKKLLDNYNGFNDVKVLV 206          
BLAST of DR403948 vs. ExPASy Swiss-Prot
Match: OMT1_ORYSJ (Quercetin 3-O-methyltransferase 1 OS=Oryza sativa subsp. japonica GN=ROMT-9 PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.943e-14
Identity = 59/190 (31.05%), Postives = 89/190 (46.84%), Query Frame = 3
Query:   90 MELANMISVPMSLTAAIRLHVPD-----AIWQGGANTPLSASQILTRILPSGGGDA--ENLQRILRLLTSYGVFSEHREFGGE----RKYSLTEIGKSLVTDAEGLSYAPYVLQHHQDALMSAWPLVHEAVLDPTIEPFVKVHGEPAYSYYGKKPEMNGLMRKAMSGVSVPFMTSVLDGYDGFKGVKRLV 626
            ++LA+   +PM+L  AI L + +     A+  GG    L     +   LPS    A  + + R+LRLL SY V     E G +    R+Y+   + K L  + +G+S A   L +    LM +W  + +AVLD  I PF K +G  A+ Y+G     N +  + M   SV     +LD Y GF     +V
Sbjct:   21 LQLASSSILPMTLKNAIELGLLETLQSAAVAGGGGKAALLTPAEVADKLPSKANPAAADMVDRMLRLLASYNVVRCEMEEGADGKLSRRYAAAPVCKWLTPNEDGVSMAALALMNQDKVLMESWYYLKDAVLDGGI-PFNKAYGMTAFEYHGTDARFNRVFNEGMKNHSVIITKKLLDLYTGFDAASTVV 209          
The following BLAST results are available for this feature:
BLAST of DR403948 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
COMT1_ROSCH1.081e-1630.53Caffeic acid 3-O-methyltransferase OS=Rosa chinens... [more]
COMT2_POPTM1.412e-1631.15Caffeic acid 3-O-methyltransferase 2 OS=Populus tr... [more]
COMT1_CAPCH3.145e-1629.51Caffeic acid 3-O-methyltransferase OS=Capsicum chi... [more]
IEMT_CLABR9.149e-1631.41(Iso)eugenol O-methyltransferase OS=Clarkia brewer... [more]
CHOMT_MEDSA9.149e-1633.66Isoliquiritigenin 2'-O-methyltransferase OS=Medica... [more]
IMT1_MESCR1.321e-1428.89Inositol 4-methyltransferase OS=Mesembryanthemum c... [more]
OMT1_ORYSJ2.943e-1431.05Quercetin 3-O-methyltransferase 1 OS=Oryza sativa ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCSAH-PNP1246M13 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone CSAH-PNP1246M13 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403948 ID=DR403948; Name=DR403948; organism=Citrus sinensis; type=EST; length=628bp
GGGGATGGTGCTGCGAAATCATAGGTCAGTAAGCAGTAATGGAAGATAAC
GAGTGCAGAGATGGCGGGAAGAAGGTAAGACTGGCCATAATGGAGCTGGC
CAACATGATAAGTGTTCCCATGTCTCTAACCGCTGCCATCCGTCTCCACG
TACCGGATGCCATCTGGCAAGGTGGGGCCAATACCCCTCTCTCCGCCTCC
CAGATCTTGACACGTATCCTCCCATCCGGCGGTGGGGACGCCGAGAACTT
GCAACGTATCCTCCGCTTGCTCACCAGCTACGGCGTGTTCTCGGAGCATC
GCGAGTTTGGAGGCGAAAGGAAGTACAGCCTCACCGAGATCGGGAAATCC
CTCGTTACTGATGCCGAGGGTCTATCGTACGCGCCCTACGTGCTCCAGCA
TCACCAGGACGCGCTTATGAGCGCGTGGCCTTTGGTGCACGAGGCCGTTC
TGGACCCAACTATTGAGCCATTTGTGAAAGTCCATGGCGAGCCGGCATAT
AGTTATTATGGGAAGAAGCCTGAAATGAACGGCTTGATGCGAAAAGCCAT
GTCGGGAGTGTCCGTGCCGTTCATGACGTCCGTTTTGGACGGTTACGATG
GGTTCAAAGGTGTGAAGCGATTGGTTGA
back to top