DR403941

Overview
NameDR403941
Unique NameDR403941
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length736
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR403941 vs. ExPASy Swiss-Prot
Match: SODM_HUMAN (Superoxide dismutase [Mn], mitochondrial OS=Homo sapiens GN=SOD2 PE=1 SV=2)

HSP 1 Score: 224.557 bits (571), Expect = 4.494e-58
Identity = 111/196 (56.63%), Postives = 134/196 (68.37%), Query Frame = 1
Query:  145 QTVTLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASD 732
            Q  +LPDLPYDY ALEP I+ +IMQLHH KHH AYV N N   E+  +AL K D +  + LQ A+KFNGGGH+NHSIFW NL+P   GGGEP    L  AI   FGS +   +K++A    +QGSGW WLG + E   L +    NQDPL      L+PLLGIDVWEHAYYLQYKNV+PDYLK IWNV+NW+  ++
Sbjct:   24 QKHSLPDLPYDYGALEPHINAQIMQLHHSKHHAAYVNNLNVTEEKYQEALAKGDVTAQIALQPALKFNGGGHINHSIFWTNLSP--NGGGEPKGELLE-AIKRDFGSFDKFKEKLTAASVGVQGSGWGWLGFNKERGHLQIAACPNQDPL-QGTTGLIPLLGIDVWEHAYYLQYKNVRPDYLKAIWNVINWENVTE 215          
BLAST of DR403941 vs. ExPASy Swiss-Prot
Match: SODM1_CAEEL (Superoxide dismutase [Mn] 1, mitochondrial OS=Caenorhabditis elegans GN=sod-2 PE=1 SV=1)

HSP 1 Score: 224.557 bits (571), Expect = 4.494e-58
Identity = 115/194 (59.28%), Postives = 140/194 (72.16%), Query Frame = 1
Query:  154 TLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPT-LVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASD 732
            +LPDLPYDY+ LEP IS EIMQLHHQKHH  YV N N+  E+L +A++K +    + LQ A+KFNGGGH+NHSIFW NLA   + GGE P + L  AI + FGSL+ L +++SA   A+QGSGW WLG   + K L V T ANQDPL  +A T LVPL GIDVWEHAYYLQYKNV+PDY+  IW + NWK  S+
Sbjct:   27 SLPDLPYDYADLEPVISHEIMQLHHQKHHATYVNNLNQIEEKLHEAVSKGNVKEAIALQPALKFNGGGHINHSIFWTNLA---KDGGE-PSAELLTAIKSDFGSLDNLQKQLSASTVAVQGSGWGWLGYCPKGKILKVATCANQDPL--EATTGLVPLFGIDVWEHAYYLQYKNVRPDYVNAIWKIANWKNVSE 214          
BLAST of DR403941 vs. ExPASy Swiss-Prot
Match: SODM_PANTR (Superoxide dismutase [Mn], mitochondrial OS=Pan troglodytes GN=SOD2 PE=2 SV=2)

HSP 1 Score: 224.172 bits (570), Expect = 5.869e-58
Identity = 110/193 (56.99%), Postives = 133/193 (68.91%), Query Frame = 1
Query:  154 TLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASD 732
            +LPDLPYDY ALEP I+ +IMQLHH KHH AYV N N   E+  +AL K D +  + LQ A+KFNGGGH+NHSIFW NL+P   GGGEP    L  AI   FGS +   +K++A    +QGSGW WLG + E   L +    NQDPL      L+PLLGIDVWEHAYYLQYKNV+PDYLK IWNV+NW+  ++
Sbjct:    3 SLPDLPYDYGALEPHINAQIMQLHHSKHHAAYVNNLNVTEEKYQEALAKGDVTAQIALQPALKFNGGGHINHSIFWTNLSP--NGGGEPKGELLE-AIKRDFGSFDKFKEKLTAASVGVQGSGWGWLGFNKERGHLQIAACPNQDPL-QGTTGLIPLLGIDVWEHAYYLQYKNVRPDYLKAIWNVINWENVTE 191          
BLAST of DR403941 vs. ExPASy Swiss-Prot
Match: SODM_HYLLA (Superoxide dismutase [Mn], mitochondrial OS=Hylobates lar GN=SOD2 PE=2 SV=2)

HSP 1 Score: 224.172 bits (570), Expect = 5.869e-58
Identity = 110/193 (56.99%), Postives = 133/193 (68.91%), Query Frame = 1
Query:  154 TLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASD 732
            +LPDLPYDY ALEP I+ +IMQLHH KHH AYV N N   E+  +AL K D +  + LQ A+KFNGGGH+NHSIFW NL+P   GGGEP    L  AI   FGS +   +K++A    +QGSGW WLG + E   L +    NQDPL      L+PLLGIDVWEHAYYLQYKNV+PDYLK IWNV+NW+  ++
Sbjct:    3 SLPDLPYDYGALEPHINAQIMQLHHSKHHAAYVNNLNVTEEKYQEALAKGDVTAQIALQPALKFNGGGHINHSIFWTNLSP--NGGGEPKGELLE-AIKRDFGSFDKFKEKLTATSVGVQGSGWGWLGFNKERGHLQIAACPNQDPL-QGTTGLIPLLGIDVWEHAYYLQYKNVRPDYLKAIWNVINWENVTE 191          
BLAST of DR403941 vs. ExPASy Swiss-Prot
Match: SODM_HORSE (Superoxide dismutase [Mn], mitochondrial OS=Equus caballus GN=SOD2 PE=2 SV=1)

HSP 1 Score: 223.402 bits (568), Expect = 1.001e-57
Identity = 111/196 (56.63%), Postives = 135/196 (68.88%), Query Frame = 1
Query:  145 QTVTLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASD 732
            Q  +LPDL YDY ALEP I+ +IMQLHH KHH AYV N N   E+  +AL K D +  + LQ A+KFNGGGH+NH+IFW NL+P   GGGEP    L  AI   FGS +   +K++A  A +QGSGW WLG + +  RL +    NQDPL      L+PLLGIDVWEHAYYLQYKNV+PDYLK IWNV+NW+  S+
Sbjct:   24 QKHSLPDLQYDYGALEPYINAQIMQLHHSKHHAAYVNNLNVTEEKYQEALAKGDVTAQIALQPALKFNGGGHINHTIFWTNLSP--NGGGEPKGKLLD-AIKRDFGSFDKFKEKLTAVSAGVQGSGWGWLGFNKDQGRLQIVACPNQDPL-QGTTGLIPLLGIDVWEHAYYLQYKNVRPDYLKAIWNVINWENVSE 215          
BLAST of DR403941 vs. ExPASy Swiss-Prot
Match: SODM_CEBAP (Superoxide dismutase [Mn], mitochondrial OS=Cebus apella GN=SOD2 PE=2 SV=2)

HSP 1 Score: 223.402 bits (568), Expect = 1.001e-57
Identity = 109/193 (56.48%), Postives = 133/193 (68.91%), Query Frame = 1
Query:  154 TLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASD 732
            +LPDLPYDY ALEP I+ +IMQLHH KHH AYV N N   E+  +AL K D +  + LQ A+KFNGGGH+NHSIFW NL+P   GGGEP    L  AI   FGS +   ++++A    +QGSGW WLG + E   L +    NQDPL      L+PLLGIDVWEHAYYLQYKNV+PDYLK IWNV+NW+  ++
Sbjct:    3 SLPDLPYDYGALEPHINAQIMQLHHSKHHAAYVNNLNDTEEKYKEALAKGDVTAQIALQPALKFNGGGHINHSIFWTNLSP--NGGGEPKGELLE-AIKRDFGSFDKFKERLTAASVGVQGSGWGWLGFNKERGHLQIAACPNQDPL-QGTTGLIPLLGIDVWEHAYYLQYKNVRPDYLKAIWNVINWENVTE 191          
BLAST of DR403941 vs. ExPASy Swiss-Prot
Match: SODM_CALJA (Superoxide dismutase [Mn], mitochondrial OS=Callithrix jacchus GN=SOD2 PE=2 SV=2)

HSP 1 Score: 223.402 bits (568), Expect = 1.001e-57
Identity = 109/193 (56.48%), Postives = 133/193 (68.91%), Query Frame = 1
Query:  154 TLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASD 732
            +LPDLPYDY ALEP I+ +IMQLHH KHH AYV N N   E+  +AL K D +  + LQ A+KFNGGGH+NHSIFW NL+P   GGGEP    L  AI   FGS +   ++++A    +QGSGW WLG + E   L +    NQDPL      L+PLLGIDVWEHAYYLQYKNV+PDYLK IWNV+NW+  ++
Sbjct:    3 SLPDLPYDYGALEPHINAQIMQLHHSKHHAAYVNNLNDTEEKYKEALAKGDVTAQIALQPALKFNGGGHINHSIFWTNLSP--NGGGEPKGELLE-AIKRDFGSFDKFKERLTAASVGVQGSGWGWLGFNKERGHLQIAACPNQDPL-QGTTGLIPLLGIDVWEHAYYLQYKNVRPDYLKAIWNVINWENVTE 191          
BLAST of DR403941 vs. ExPASy Swiss-Prot
Match: SODM_CHLMU (Superoxide dismutase [Mn] OS=Chlamydia muridarum GN=sodA PE=3 SV=2)

HSP 1 Score: 219.55 bits (558), Expect = 1.446e-56
Identity = 101/190 (53.16%), Postives = 136/190 (71.58%), Query Frame = 1
Query:  157 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPT-LVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKY 723
            LPDLPYDY ALEP IS EIM LHHQKHHQ Y+ N N+A++ L  A    D + ++ +  A++FNGGGH+NHS+FW+ LAP ++GGG PP   L   I+  +GS +  ++   +  AA+QGSGW WL    + + L+++TTANQDPL  +A T ++PLLG+DVWEHAYYLQYKN + DYLKN  +++NW Y
Sbjct:    8 LPDLPYDYDALEPVISAEIMHLHHQKHHQGYINNLNEALKSLDVASATQDLTGLIAINPALRFNGGGHINHSLFWEMLAPQNKGGGTPPRHELLKLIEKFWGSFDNFLKNFISSSAAVQGSGWGWLAFCPKKQELMIQTTANQDPL--EATTGMIPLLGVDVWEHAYYLQYKNARLDYLKNFPSIINWDY 195          
BLAST of DR403941 vs. ExPASy Swiss-Prot
Match: SODM_RABIT (Superoxide dismutase [Mn], mitochondrial (Fragment) OS=Oryctolagus cuniculus GN=SOD2 PE=2 SV=1)

HSP 1 Score: 216.853 bits (551), Expect = 9.371e-56
Identity = 106/193 (54.92%), Postives = 132/193 (68.39%), Query Frame = 1
Query:  154 TLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASD 732
            +LPDLPYDY ALEP I+ +IM+LHH KHH AYV N N   E+  +AL + D +  V LQ A+KF GGGH+NH+IFW NL+P   GGGEP    L  AI   FGS +   ++++A    +QGSGW WLG + E   L +   ANQDPL      L+PLLGIDVWEHAYYLQYKNV+PDYLK IWNV+ W+  ++
Sbjct:    8 SLPDLPYDYGALEPHINAQIMELHHSKHHAAYVNNLNATEEKYREALARGDVTAHVALQPALKFKGGGHINHTIFWTNLSP--NGGGEPKGELLE-AIKRDFGSFDKFKERLTAVSVGVQGSGWGWLGFNKEQGHLQIAACANQDPL-QGTTGLIPLLGIDVWEHAYYLQYKNVRPDYLKAIWNVITWENVTE 196          
BLAST of DR403941 vs. ExPASy Swiss-Prot
Match: SODM_CHLPN (Superoxide dismutase [Mn] OS=Chlamydia pneumoniae GN=sodA PE=3 SV=1)

HSP 1 Score: 215.698 bits (548), Expect = 2.088e-55
Identity = 98/188 (52.13%), Postives = 134/188 (71.28%), Query Frame = 1
Query:  154 TLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNW 717
            +LP+LPYDY ALEP IS EIM LHHQKHHQ Y+ N N A+++L  A  + + + ++ L+ A++FNGGGH+NHS+FW+ LAP+ +GGG+PP   L   I+  +G+++  ++K+    A +QGSGW WLG     + LV++ TANQDPL      L PLLG+DVWEHAYYLQYKNV+ DYLK    ++NW
Sbjct:    7 SLPELPYDYDALEPVISSEIMILHHQKHHQIYINNLNAALKRLDAAETQQNLNELIALEPALRFNGGGHINHSLFWETLAPIDQGGGQPPKHELLSLIERFWGTMDNFLKKLIEVAAGVQGSGWAWLGFCPAKQELVLQATANQDPLEPLTGKL-PLLGVDVWEHAYYLQYKNVRMDYLKAFPQIINW 193          
The following BLAST results are available for this feature:
BLAST of DR403941 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 225
Match NameE-valueIdentityDescription
SODM_HUMAN4.494e-5856.63Superoxide dismutase [Mn], mitochondrial OS=Homo s... [more]
SODM1_CAEEL4.494e-5859.28Superoxide dismutase [Mn] 1, mitochondrial OS=Caen... [more]
SODM_PANTR5.869e-5856.99Superoxide dismutase [Mn], mitochondrial OS=Pan tr... [more]
SODM_HYLLA5.869e-5856.99Superoxide dismutase [Mn], mitochondrial OS=Hyloba... [more]
SODM_HORSE1.001e-5756.63Superoxide dismutase [Mn], mitochondrial OS=Equus ... [more]
SODM_CEBAP1.001e-5756.48Superoxide dismutase [Mn], mitochondrial OS=Cebus ... [more]
SODM_CALJA1.001e-5756.48Superoxide dismutase [Mn], mitochondrial OS=Callit... [more]
SODM_CHLMU1.446e-5653.16Superoxide dismutase [Mn] OS=Chlamydia muridarum G... [more]
SODM_RABIT9.371e-5654.92Superoxide dismutase [Mn], mitochondrial (Fragment... [more]
SODM_CHLPN2.088e-5552.13Superoxide dismutase [Mn] OS=Chlamydia pneumoniae ... [more]

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Properties
Property NameValue
Genbank descriptionCSAH-PNP1246M06 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone CSAH-PNP1246M06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403941 ID=DR403941; Name=DR403941; organism=Citrus sinensis; type=EST; length=736bp
GGGGGGACTTAATTTAGCTCTTCTCGGTTGAATTTCGAACGATCAAGAAA
CGTCACCGTTTCATTCGCGATGGCTCTCCGTTCGCTCGCCACCAGAAAAG
CTATAGGCTTGGGTAAATCCGTAGGATTAGGGCTACGTGGACTGCAGACG
GTCACGCTGCCTGATCTTCCGTACGATTACAGCGCTTTGGAGCCGGCGAT
TAGCGGAGAGATTATGCAGCTTCATCACCAGAAGCATCACCAGGCTTACG
TTACTAACTACAACAAGGCGGTCGAGCAGCTTTTTCAAGCTTTGAACAAA
GTCGACACTTCCACCGTCGTCCAGTTGCAGGGCGCTATCAAGTTCAACGG
CGGAGGTCATGTCAACCACTCAATTTTCTGGAAGAATCTTGCTCCTGTTC
ACGAAGGAGGTGGCGAGCCACCACATAGTTCCCTTGGTTGGGCTATTGAC
ACGCATTTTGGTTCTCTGGAAGCATTGATACAAAAGATGAGTGCTGAGGG
TGCAGCTTTGCAGGGCTCTGGATGGGTGTGGCTTGGTTTAGATACAGAGT
TTAAAAGGCTTGTGGTTGAAACTACTGCAAATCAGGATCCACTGGTGACT
AAAGCCCCAACTCTGGTTCCTTTGCTTGGTATAGATGTTTGGGAGCATGC
ATACTACCTACAGTACAAGAATGTCAAACCAGATTATCTGAAAAACATTT
GGAACGTAATGAACTGGAAGTATGCTAGTGATGTGT
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