DR403941

Overview
NameDR403941
Unique NameDR403941
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length736
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR403941 vs. ExPASy Swiss-Prot
Match: SODM2_CAEEL (Superoxide dismutase [Mn] 2, mitochondrial OS=Caenorhabditis elegans GN=sod-3 PE=1 SV=2)

HSP 1 Score: 215.312 bits (547), Expect = 2.726e-55
Identity = 108/193 (55.96%), Postives = 133/193 (68.91%), Query Frame = 1
Query:  154 TLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASD 732
            TLPDLP+DY+ LEP IS EIMQLHHQKHH  YV N N+  E+L +A++K +    + LQ A+KFNGGGH+NHSIFW NLA   + GGEP    +   I   FGSL+ L +++S    A+QGSGW WLG   + K L + T ANQDPL      +VPL GIDVWEHAYYLQYKNV+PDY+  IW + NWK  S+
Sbjct:   27 TLPDLPFDYADLEPVISHEIMQLHHQKHHATYVNNLNQIEEKLHEAVSKGNLKEAIALQPALKFNGGGHINHSIFWTNLA---KDGGEPSKELMD-TIKRDFGSLDNLQKRLSDITIAVQGSGWGWLGYCKKDKILKIATCANQDPL----EGMVPLFGIDVWEHAYYLQYKNVRPDYVHAIWKIANWKNISE 211          
BLAST of DR403941 vs. ExPASy Swiss-Prot
Match: SODM_CHLTR (Superoxide dismutase [Mn] OS=Chlamydia trachomatis GN=sodA PE=3 SV=1)

HSP 1 Score: 213.386 bits (542), Expect = 1.036e-54
Identity = 100/190 (52.63%), Postives = 133/190 (70.00%), Query Frame = 1
Query:  157 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPT-LVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKY 723
            LP LPYDY ALEP IS EIMQLHHQKHHQ Y+ N N+A++ L  A    D + ++ +  A++FNGG H+NHS+FW+ LAP  +GGG PP   L   I+  +GS +  ++      AA+QGSGW WL    + + L+V+TTANQDPL  +A T ++PLLG+DVWEHAYYLQYKN + DYLK+  +++NW Y
Sbjct:    8 LPALPYDYDALEPVISAEIMQLHHQKHHQGYINNLNEALKSLDVANATQDLARLIAINPALRFNGGSHINHSLFWEMLAPQGKGGGVPPRHELLKLIEKFWGSFDNFLKNFITSSAAVQGSGWGWLAFCPQKQELMVQTTANQDPL--EATTGMIPLLGVDVWEHAYYLQYKNARMDYLKSFPSIINWDY 195          
BLAST of DR403941 vs. ExPASy Swiss-Prot
Match: SODM_CAVPO (Superoxide dismutase [Mn], mitochondrial (Fragment) OS=Cavia porcellus GN=SOD2 PE=2 SV=1)

HSP 1 Score: 213.386 bits (542), Expect = 1.036e-54
Identity = 111/196 (56.63%), Postives = 134/196 (68.37%), Query Frame = 1
Query:  127 LGLRGL-QTVTLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVM 711
            LG+ G+ Q  +LPDLPYDY AL+P I+ EIMQLHH KHH AY+ N N A E+  +AL K D +  V LQ A+KFNGGGH+NHSIFW NL+P   GGGEP    L  AI   FGS +   +K++A    +QGSGW WLG + E   L +   +NQDPL      L+PLLGIDVWEHAYYLQ KNV+PDYLK IW V+
Sbjct:   17 LGILGVRQKHSLPDLPYDYGALQPHINAEIMQLHHSKHHAAYLNNLNIAEEKYQEALAKGDVTAQVALQPALKFNGGGHINHSIFWTNLSP--NGGGEPKGELLE-AIKRDFGSFDKFKEKLTAVSVGVQGSGWGWLGFNKERGCLQIAACSNQDPL-QGTTGLIPLLGIDVWEHAYYLQLKNVRPDYLKAIWKVI 208          
BLAST of DR403941 vs. ExPASy Swiss-Prot
Match: SODM_ONCVO (Superoxide dismutase [Mn], mitochondrial OS=Onchocerca volvulus GN=sod-2 PE=2 SV=1)

HSP 1 Score: 212.231 bits (539), Expect = 2.308e-54
Identity = 108/208 (51.92%), Postives = 137/208 (65.87%), Query Frame = 1
Query:  109 LGKSVGLGLRGLQTVTLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASD 732
            +GK+  L  + L+ V LPDLPYDY ALEP +S EIMQ+HH KHH AYV   N+A E++ +AL K DT   V     + FN GGH+NH++FW+ L  V   G   P+S L  AI   FGSLE +I K++A+  A+QGSGW WL  D E KRL +    NQD L+     L+PL  IDVWEHAYYLQYKN++PD++K IW + NWK  SD
Sbjct:   13 VGKNYCLNTQRLKHV-LPDLPYDYGALEPILSAEIMQVHHGKHHAAYVNALNQAEEKVKEALAKGDTQAAVAGTKLMNFNTGGHINHTLFWEGLTAVKNSG--EPNSELMTAIKKDFGSLETMIDKLNAKTIAIQGSGWGWLAYDKEMKRLQLACCPNQD-LLEPTTGLIPLFCIDVWEHAYYLQYKNLRPDFVKAIWKIANWKIISD 216          
BLAST of DR403941 vs. ExPASy Swiss-Prot
Match: SODM_DROME (Superoxide dismutase [Mn], mitochondrial OS=Drosophila melanogaster GN=Sod2 PE=2 SV=3)

HSP 1 Score: 211.46 bits (537), Expect = 3.937e-54
Identity = 103/196 (52.55%), Postives = 136/196 (69.39%), Query Frame = 1
Query:  130 GLRGLQTVTLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNW 717
            G+RG  T  LP LPYDY+ALEP I  EIM+LHHQKHHQ YV N N A EQL +A +K DT+ ++QL  A++FNGGGH+NH+IFW+NL+P        P   L  AI++ + SLE   ++++    A+QGSGW WLG + +  +L +    NQDPL   +  L+PL GIDVWEHAYYLQYKNV+P Y++ IW++ NW
Sbjct:   14 GVRGKHT--LPKLPYDYAALEPIICREIMELHHQKHHQTYVNNLNAAEEQLEEAKSKSDTTKLIQLAPALRFNGGGHINHTIFWQNLSP----NKTQPSDDLKKAIESQWKSLEEFKKELTTLTVAVQGSGWGWLGFNKKSGKLQLAALPNQDPL-EASTGLIPLFGIDVWEHAYYLQYKNVRPSYVEAIWDIANW 202          
BLAST of DR403941 vs. ExPASy Swiss-Prot
Match: SODM_SCHPO (Superoxide dismutase [Mn], mitochondrial OS=Schizosaccharomyces pombe GN=sod2 PE=1 SV=1)

HSP 1 Score: 207.994 bits (528), Expect = 4.353e-53
Identity = 112/199 (56.28%), Postives = 137/199 (68.84%), Query Frame = 1
Query:  136 RGLQT-VTLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHS-SLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYA 726
            RG+ T  TLP LPY Y+ALEPA+S  IM+LHH KHHQ YV N N A E+L  A   +D    V LQ AIKFNGGGH+NHS+FWK LAP  EGGG+P  S SL  AI + +GSLE   ++M+A  A++QGSGW WL +D +   L + TTANQD +V       P++GID WEHAYY QY+N K +Y K IWNV+NWK A
Sbjct:   20 RGVHTKATLPPLPYAYNALEPALSETIMKLHHDKHHQTYVNNLNAAQEKL--ADPNLDLEGEVALQAAIKFNGGGHINHSLFWKILAPQKEGGGKPVTSGSLHKAITSKWGSLEDFQKEMNAALASIQGSGWAWLIVDKD-GSLRITTTANQDTIVKSK----PIIGIDAWEHAYYPQYENRKAEYFKAIWNVINWKEA 211          
BLAST of DR403941 vs. ExPASy Swiss-Prot
Match: SODM_CANAL (Superoxide dismutase [Mn], mitochondrial OS=Candida albicans GN=SOD2 PE=1 SV=1)

HSP 1 Score: 205.297 bits (521), Expect = 2.821e-52
Identity = 100/194 (51.55%), Postives = 136/194 (70.10%), Query Frame = 1
Query:  154 TLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPP--HSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLD-TEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYA 726
            +LP+L Y++SA EP ISG+I ++H+ KHHQ YV N N ++EQ  +A +K +   +V L+ AI FNGGG++NH ++WKNLAPV +GGG+PP   S LG  I   FGSL+ LI+  + + A +QGSGW ++  +      + V TTANQD +    P LVPL+ ID WEHAYYLQY+NVK DY KN+W+V+NWK A
Sbjct:   37 SLPELDYEFSATEPYISGQINEIHYTKHHQTYVNNLNASIEQAVEAKSKGEVKKLVALEKAINFNGGGYLNHCLWWKNLAPVSQGGGQPPSEDSKLGKQIVKQFGSLDKLIEITNGKLAGIQGSGWAFIVKNKANGDTIDVITTANQDTVTD--PNLVPLIAIDAWEHAYYLQYQNVKADYFKNLWHVINWKEA 228          
BLAST of DR403941 vs. ExPASy Swiss-Prot
Match: SODM_CHAFE (Superoxide dismutase [Mn], mitochondrial OS=Charybdis feriatus PE=2 SV=1)

HSP 1 Score: 204.912 bits (520), Expect = 3.685e-52
Identity = 112/194 (57.73%), Postives = 133/194 (68.56%), Query Frame = 1
Query:  115 KSVGLGLRGLQTVTLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPT-LVPLLGIDVWEHAYYLQYKNVKPDYLK 693
            +S+  GL   Q  TLPDLPYDY ALEP IS EIMQLHH KHHQ YV N N A E+L +A  K D ST++ L  A++FNGGGH+NHSIFW+NL+     GGEP    L  AI+  FGS+E +  ++SA+  A+QGSGW WLG   E   L + T  NQDPL  +A T LVPL GIDVWEHAYYLQYKNV+   LK
Sbjct:   10 RSLRAGLWCRQKHTLPDLPYDYGALEPTISAEIMQLHHSKHHQTYVNNLNVAEEKLAEAKEKGDVSTIISLAPALRFNGGGHINHSIFWQNLS---ADGGEPEGELLA-AINRDFGSVENMKNQLSAQTVAVQGSGWGWLGYIAE-GALQIATCPNQDPL--EATTGLVPLFGIDVWEHAYYLQYKNVRRIMLK 196          
BLAST of DR403941 vs. ExPASy Swiss-Prot
Match: SODM_GANMI (Superoxide dismutase [Mn], mitochondrial OS=Ganoderma microsporum PE=2 SV=1)

HSP 1 Score: 204.527 bits (519), Expect = 4.813e-52
Identity = 102/194 (52.58%), Postives = 134/194 (69.07%), Query Frame = 1
Query:  157 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHE----GGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYA 726
            LPDLPY Y+ALEP IS +IM+LHH+KHHQ YV + N A +   +A    +    + LQ A+KFNGGGH+NHS+FWKNLAP        GG      L  AI+ ++GS++  I++ +A  AA+QGSGW WLGL+   KRL + TTANQDPL++     VP++G+D+WEHA+YLQY NVK DYL  IW V+N+K A
Sbjct:    5 LPDLPYAYNALEPFISQQIMELHHKKHHQTYVNSLNAAEQAYAKASTPKER---IALQSALKFNGGGHINHSLFWKNLAPAKSEGKGNGGALADGPLKSAIEQNWGSVDNFIKEFNATTAAIQGSGWGWLGLNPATKRLEITTTANQDPLLSH----VPIIGVDIWEHAFYLQYLNVKADYLAAIWIVINFKEA 191          
BLAST of DR403941 vs. ExPASy Swiss-Prot
Match: SODM_YEAST (Superoxide dismutase [Mn], mitochondrial OS=Saccharomyces cerevisiae GN=SOD2 PE=1 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 5.883e-50
Identity = 110/227 (48.46%), Postives = 141/227 (62.11%), Query Frame = 1
Query:   88 ATRKAIGLGKSVGLGLRGLQT----VTLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKV--------DTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLD-TEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYAS 729
            A   A  L K  GL L         VTLPDL +D+ ALEP ISG+I +LH+ KHHQ YV  +N AV+Q FQ L+ +        +   ++ +Q  IKF+GGG  NH +FW+NLAP  +GGGEPP  +L  AID  FGSL+ LI+  + + A +QGSGW ++  + +   +L V  T NQD   T    LVPL+ ID WEHAYYLQY+N K DY K IWNV+NWK AS
Sbjct:    3 AKTAAANLTKKGGLSLLSTTARRTKVTLPDLKWDFGALEPYISGQINELHYTKHHQTYVNGFNTAVDQ-FQELSDLLAKEPSPANARKMIAIQQNIKFHGGGFTNHCLFWENLAPESQGGGEPPTGALAKAIDEQFGSLDELIKLTNTKLAGVQGSGWAFIVKNLSNGGKLDVVQTYNQD---TVTGPLVPLVAIDAWEHAYYLQYQNKKADYFKAIWNVVNWKEAS 225          
The following BLAST results are available for this feature:
BLAST of DR403941 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 225
Match NameE-valueIdentityDescription
SODM2_CAEEL2.726e-5555.96Superoxide dismutase [Mn] 2, mitochondrial OS=Caen... [more]
SODM_CHLTR1.036e-5452.63Superoxide dismutase [Mn] OS=Chlamydia trachomatis... [more]
SODM_CAVPO1.036e-5456.63Superoxide dismutase [Mn], mitochondrial (Fragment... [more]
SODM_ONCVO2.308e-5451.92Superoxide dismutase [Mn], mitochondrial OS=Onchoc... [more]
SODM_DROME3.937e-5452.55Superoxide dismutase [Mn], mitochondrial OS=Drosop... [more]
SODM_SCHPO4.353e-5356.28Superoxide dismutase [Mn], mitochondrial OS=Schizo... [more]
SODM_CANAL2.821e-5251.55Superoxide dismutase [Mn], mitochondrial OS=Candid... [more]
SODM_CHAFE3.685e-5257.73Superoxide dismutase [Mn], mitochondrial OS=Charyb... [more]
SODM_GANMI4.813e-5252.58Superoxide dismutase [Mn], mitochondrial OS=Ganode... [more]
SODM_YEAST5.883e-5048.46Superoxide dismutase [Mn], mitochondrial OS=Saccha... [more]

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Properties
Property NameValue
Genbank descriptionCSAH-PNP1246M06 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone CSAH-PNP1246M06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403941 ID=DR403941; Name=DR403941; organism=Citrus sinensis; type=EST; length=736bp
GGGGGGACTTAATTTAGCTCTTCTCGGTTGAATTTCGAACGATCAAGAAA
CGTCACCGTTTCATTCGCGATGGCTCTCCGTTCGCTCGCCACCAGAAAAG
CTATAGGCTTGGGTAAATCCGTAGGATTAGGGCTACGTGGACTGCAGACG
GTCACGCTGCCTGATCTTCCGTACGATTACAGCGCTTTGGAGCCGGCGAT
TAGCGGAGAGATTATGCAGCTTCATCACCAGAAGCATCACCAGGCTTACG
TTACTAACTACAACAAGGCGGTCGAGCAGCTTTTTCAAGCTTTGAACAAA
GTCGACACTTCCACCGTCGTCCAGTTGCAGGGCGCTATCAAGTTCAACGG
CGGAGGTCATGTCAACCACTCAATTTTCTGGAAGAATCTTGCTCCTGTTC
ACGAAGGAGGTGGCGAGCCACCACATAGTTCCCTTGGTTGGGCTATTGAC
ACGCATTTTGGTTCTCTGGAAGCATTGATACAAAAGATGAGTGCTGAGGG
TGCAGCTTTGCAGGGCTCTGGATGGGTGTGGCTTGGTTTAGATACAGAGT
TTAAAAGGCTTGTGGTTGAAACTACTGCAAATCAGGATCCACTGGTGACT
AAAGCCCCAACTCTGGTTCCTTTGCTTGGTATAGATGTTTGGGAGCATGC
ATACTACCTACAGTACAAGAATGTCAAACCAGATTATCTGAAAAACATTT
GGAACGTAATGAACTGGAAGTATGCTAGTGATGTGT
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