DR403941

Overview
NameDR403941
Unique NameDR403941
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length736
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR403941 vs. ExPASy Swiss-Prot
Match: SODM_DEBHA (Probable superoxide dismutase [Mn], mitochondrial OS=Debaryomyces hansenii GN=DEHA2E01232g PE=3 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 2.920e-49
Identity = 99/200 (49.50%), Postives = 133/200 (66.50%), Query Frame = 1
Query:  139 GLQTVTLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHS--SLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTE-FKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYAS 729
            G   + LP L + Y +LEP ISG+I ++HH+KHHQ YV  YN A+EQL +A ++ D    + +Q  IKF+GGGH NH +FWK+LAP  + GG+ P S  +LG  I   +GS++ LI   +A+ A++QGSGW ++  + +    L V TT NQD   T    LVPL+ ID WEHAYYLQY+NVK DY K IWNV+NW+ AS
Sbjct:    8 GKNKIELPQLDWAYDSLEPYISGKINEIHHKKHHQTYVNGYNSAIEQLIEAESQGDVKKAIVIQQNIKFHGGGHTNHVLFWKSLAPNSQNGGKHPGSDTNLGKKIIEQYGSIDNLISITNAKLASIQGSGWAFIVKNKQNGGNLDVVTTYNQD---TVTDPLVPLIAIDAWEHAYYLQYQNVKADYFKAIWNVINWEEAS 204          
BLAST of DR403941 vs. ExPASy Swiss-Prot
Match: SODM_NEUCR (Superoxide dismutase [Mn], mitochondrial OS=Neurospora crassa GN=sod-2 PE=3 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 3.228e-48
Identity = 100/204 (49.02%), Postives = 128/204 (62.75%), Query Frame = 1
Query:  133 LRGLQTVTLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVH--EGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDT--EFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASD 732
            + GL T +LP LPY Y+ALEP IS +IM+LHH KHHQ YVTN N A++    A+   D    +  Q AIKFNGGGH+NHS+FWKNLAP    E        SL   I+  +GS +   +  SA    +QGSGW WL  ++  E  RL + TT +QDP+V      VP+ G+D+WEHAYYLQY N K  Y++NIW V+NWK A +
Sbjct:   28 MAGLATYSLPQLPYAYNALEPYISAQIMELHHSKHHQTYVTNLNNALKVHVAAIASSDIPAQIAQQPAIKFNGGGHINHSLFWKNLAPAETPETNYSKAAPSLAAEIEKTWGSFDEFKKAFSAALLGIQGSGWGWLVKESTAEKGRLRIITTKDQDPVVGGE---VPVFGVDMWEHAYYLQYLNGKAAYVENIWKVINWKTAEE 228          
BLAST of DR403941 vs. ExPASy Swiss-Prot
Match: SODM_ASPFU (Superoxide dismutase [Mn], mitochondrial OS=Aspergillus fumigatus GN=sodB PE=1 SV=3)

HSP 1 Score: 191.43 bits (485), Expect = 4.216e-48
Identity = 96/197 (48.73%), Postives = 122/197 (61.93%), Query Frame = 1
Query:  145 QTVTLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSS-LGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASD 732
            Q  TLP LPY Y AL+P IS +IM+LHH+KHHQ YV   N A+E   +A    D   +V +Q AIKFNGGGH+NHS+FWKNLAP   GGG+   +  L  AI+  +GS +      +     +QGSGW WL  D    +L + TT +QDP+   A    P+ G+D+WEHAYYLQY N K  Y K IWNV+NW  A +
Sbjct:    3 QQYTLPPLPYPYDALQPYISQQIMELHHKKHHQTYVNGLNAALEAQKKAAEANDVPKLVSVQQAIKFNGGGHINHSLFWKNLAPEKSGGGKIDQAPVLKAAIEQRWGSFDKFKDAFNTTLLGIQGSGWGWLVTDGPKGKLDITTTHDQDPVTGAA----PVFGVDMWEHAYYLQYLNDKASYAKGIWNVINWAEAEN 195          
BLAST of DR403941 vs. ExPASy Swiss-Prot
Match: SODF_TETPY (Superoxide dismutase [Fe] OS=Tetrahymena pyriformis PE=1 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 1.602e-47
Identity = 93/187 (49.73%), Postives = 118/187 (63.10%), Query Frame = 1
Query:  166 LPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPP--HSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWK 720
            L Y+YS LEP +S  ++  HH KHHQAYV N N   EQ+  A  + D   +  LQ A++FN GGHVNH I+W NLAPV  GGG  P  HS L  AI   +GS E  I   +   AA+QGSGW WLG DT  K L +    NQD  + +  ++VPLL IDVWEHAYYL Y+N++P YL  +W ++NW+
Sbjct:    1 LNYEYSDLEPVLSAHLLSFHHGKHHQAYVNNLNATYEQIAAATKENDAHKIATLQSALRFNLGGHVNHWIYWDNLAPVKSGGGVLPDEHSPLTKAIKEKWGSYENFITLFNTRTAAIQGSGWGWLGYDTVSKSLRLFELGNQD--MPEWSSIVPLLTIDVWEHAYYLDYQNLRPKYLTEVWKIVNWR 185          
BLAST of DR403941 vs. ExPASy Swiss-Prot
Match: SODM_PROFR (Superoxide dismutase [Mn/Fe] OS=Propionibacterium freudenreichii subsp. shermanii GN=sodA PE=1 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 3.569e-47
Identity = 95/188 (50.53%), Postives = 122/188 (64.89%), Query Frame = 1
Query:  154 TLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNW 717
            TLP+LPYDYSALEP ISGEIM+LHH KHH+AYV   N A+++L +A +K D   + +L+  + FN  GHVNHS+FWKN+AP      E P   LG AID  FGS + +  + +A    +QGSGW  L  D   KR  + T    D         +PLL +D+WEHA+YLQYKNVK DY+K+ WNV+NW
Sbjct:    4 TLPELPYDYSALEPYISGEIMELHHDKHHKAYVDGANTALDKLAEARDKADFGAINKLEKDLAFNLAGHVNHSVFWKNMAP-KGSAPERPTDELGAAIDEFFGSFDNMKAQFTAAATGIQGSGWASLVWDPLGKR--INTLQFYDHQNNLPAGSIPLLQLDMWEHAFYLQYKNVKGDYVKSWWNVVNW 188          
BLAST of DR403941 vs. ExPASy Swiss-Prot
Match: SODM_GLOMM (Superoxide dismutase [Mn], mitochondrial OS=Glossina morsitans morsitans GN=Sod2 PE=2 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 4.661e-47
Identity = 95/208 (45.67%), Postives = 127/208 (61.06%), Query Frame = 1
Query:  109 LGKSVGLGLRGLQTVTLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASD 732
            L +++   +RG  T  LP LPYDY AL P IS +I+++HH KHHQ YV N N   EQ+ +A +K D + VV+L     FN GGH+NHSI+W+NL+P        P + L  AI+  F S E   + +SA    +QGSGW WLG + + K+L +   +NQ+PL      LVPL  IDVWEHAYYLQ KN    Y++  W++ NWK  SD
Sbjct:    8 LSRTIKAAVRGKHT--LPKLPYDYGALAPIISKDILEVHHGKHHQTYVNNLNAVEEQMTEAHSKKDVNKVVELSKNYAFNWGGHLNHSIYWQNLSPTK----SEPSADLKKAIEEQFSSFEQFKKDLSALSIGVQGSGWGWLGYNKKXKKLQILAVSNQEPL-QAVTGLVPLFAIDVWEHAYYLQXKNXXAKYVEAXWDIANWKBISD 208          
BLAST of DR403941 vs. ExPASy Swiss-Prot
Match: SODM_PENCH (Superoxide dismutase [Mn], mitochondrial OS=Penicillium chrysogenum GN=SOD PE=1 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 1.771e-46
Identity = 98/199 (49.25%), Postives = 126/199 (63.32%), Query Frame = 1
Query:  145 QTVTLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNL----APVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFK-RLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYA 726
            QT TLP LPY Y ALEP IS +IM+LHHQKHHQ Y+ N N A+     A    D  T++ LQ  ++FNGGGH+NHS+FWKNL     P ++  G P   +L  AI + +GS EA ++   AE   LQGSGW WL      K RL + TT +QDP+   AP  VP+ G+D+WEHAYYLQY N K  Y++ IW +++W  A
Sbjct:    4 QTHTLPPLPYAYDALEPVISKQIMELHHQKHHQTYINNLNAALSAQASATASNDVPTLISLQQKLRFNGGGHINHSLFWKNLTPPGTPANDIAGAP---ALREAIVSRWGSHEAFVKAFGAELLGLQGSGWGWLVSKGGAKGRLEIVTTKDQDPV--NAPD-VPVFGVDMWEHAYYLQYLNNKAGYVEGIWKIIHWAEA 196          
BLAST of DR403941 vs. ExPASy Swiss-Prot
Match: SODM_ASPOR (Superoxide dismutase [Mn], mitochondrial OS=Aspergillus oryzae GN=sodB PE=3 SV=2)

HSP 1 Score: 186.037 bits (471), Expect = 1.771e-46
Identity = 93/197 (47.21%), Postives = 122/197 (61.93%), Query Frame = 1
Query:  148 TVTLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAP--VHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASD 732
            T +LP LPY Y ALEP I  +IM++HHQKHHQ Y+TN N A+     AL   +   ++ LQ  IKFNGGGH+NHS+FWKNLAP    E   +     L  AI+  +GS+E   +   A    LQGSGW WL  +    +L + +T +QDP+  K    VP+ G+D+WEHAYYLQY N K  Y++ IW V+NW+ A D
Sbjct:    4 TFSLPPLPYAYDALEPVICKQIMEIHHQKHHQTYITNLNAALSAQSTALAANNIPQLINLQQKIKFNGGGHINHSLFWKNLAPHASPETNIDQAAPVLKAAIEAQYGSVEKFKEAFGATLLGLQGSGWGWLVANGPGGKLEIVSTKDQDPVTDK----VPVFGVDMWEHAYYLQYFNNKASYVEGIWKVLNWRTAED 196          
BLAST of DR403941 vs. ExPASy Swiss-Prot
Match: SODB_ASPNG (Superoxide dismutase [Mn], mitochondrial OS=Aspergillus niger GN=sodB PE=3 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 2.313e-46
Identity = 92/193 (47.67%), Postives = 121/193 (62.69%), Query Frame = 1
Query:  154 TLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHS--SLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYA 726
            TLPDLPYDY ALEP IS +IM+LHH+KHHQ YV N N A+     AL+  D + ++ +Q  +KFNGGGH+NHS+FWKNLA           S  SL  AI+  +GS++       A    +QGSGW WL    +   L + TT +QDP+       +P+ G+D+WEHAYYLQY N K  Y++NIW V+NW+ A
Sbjct:    6 TLPDLPYDYDALEPIISKQIMELHHKKHHQTYVNNLNAALASQASALDSNDITQLISIQQKLKFNGGGHINHSLFWKNLARYDSPATNLERSAPSLKDAIEKQWGSVKNFTDAFEAVLLGIQGSGWGWLVSSGKTGFLEIVTTKDQDPVTGP----IPVFGVDMWEHAYYLQYLNNKASYVQNIWKVINWEEA 194          
BLAST of DR403941 vs. ExPASy Swiss-Prot
Match: SODM_NOCAS (Superoxide dismutase [Mn] OS=Nocardia asteroides GN=sodA PE=3 SV=2)

HSP 1 Score: 184.111 bits (466), Expect = 6.731e-46
Identity = 95/193 (49.22%), Postives = 120/193 (62.18%), Query Frame = 1
Query:  154 TLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASD 732
            TLPDL YDYSALEP ISG+I +LHH KHH AYV   N A+E+L  A    D S +   +  + F+ GGHVNHSI+WKNL+P    GG+ P   L  AID  FGS +    + +A    LQGSGW  LG DT  ++L+     +Q   V     ++PLL +D+WEHA+YLQYKNVK DY+   WNV+NW    D
Sbjct:    5 TLPDLDYDYSALEPHISGQINELHHSKHHAAYVAGANTALEKLEAAREAGDHSAIFLHEKNLAFHLGGHVNHSIWWKNLSP---NGGDKPVGELAAAIDDQFGSFDKFRAQFTAAANGLQGSGWAVLGYDTLGQKLLTFQLYDQQANVPLG--IIPLLQVDMWEHAFYLQYKNVKADYVTAFWNVVNWADVQD 192          
The following BLAST results are available for this feature:
BLAST of DR403941 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 225
Match NameE-valueIdentityDescription
SODM_DEBHA2.920e-4949.50Probable superoxide dismutase [Mn], mitochondrial ... [more]
SODM_NEUCR3.228e-4849.02Superoxide dismutase [Mn], mitochondrial OS=Neuros... [more]
SODM_ASPFU4.216e-4848.73Superoxide dismutase [Mn], mitochondrial OS=Asperg... [more]
SODF_TETPY1.602e-4749.73Superoxide dismutase [Fe] OS=Tetrahymena pyriformi... [more]
SODM_PROFR3.569e-4750.53Superoxide dismutase [Mn/Fe] OS=Propionibacterium ... [more]
SODM_GLOMM4.661e-4745.67Superoxide dismutase [Mn], mitochondrial OS=Glossi... [more]
SODM_PENCH1.771e-4649.25Superoxide dismutase [Mn], mitochondrial OS=Penici... [more]
SODM_ASPOR1.771e-4647.21Superoxide dismutase [Mn], mitochondrial OS=Asperg... [more]
SODB_ASPNG2.313e-4647.67Superoxide dismutase [Mn], mitochondrial OS=Asperg... [more]
SODM_NOCAS6.731e-4649.22Superoxide dismutase [Mn] OS=Nocardia asteroides G... [more]

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Properties
Property NameValue
Genbank descriptionCSAH-PNP1246M06 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone CSAH-PNP1246M06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403941 ID=DR403941; Name=DR403941; organism=Citrus sinensis; type=EST; length=736bp
GGGGGGACTTAATTTAGCTCTTCTCGGTTGAATTTCGAACGATCAAGAAA
CGTCACCGTTTCATTCGCGATGGCTCTCCGTTCGCTCGCCACCAGAAAAG
CTATAGGCTTGGGTAAATCCGTAGGATTAGGGCTACGTGGACTGCAGACG
GTCACGCTGCCTGATCTTCCGTACGATTACAGCGCTTTGGAGCCGGCGAT
TAGCGGAGAGATTATGCAGCTTCATCACCAGAAGCATCACCAGGCTTACG
TTACTAACTACAACAAGGCGGTCGAGCAGCTTTTTCAAGCTTTGAACAAA
GTCGACACTTCCACCGTCGTCCAGTTGCAGGGCGCTATCAAGTTCAACGG
CGGAGGTCATGTCAACCACTCAATTTTCTGGAAGAATCTTGCTCCTGTTC
ACGAAGGAGGTGGCGAGCCACCACATAGTTCCCTTGGTTGGGCTATTGAC
ACGCATTTTGGTTCTCTGGAAGCATTGATACAAAAGATGAGTGCTGAGGG
TGCAGCTTTGCAGGGCTCTGGATGGGTGTGGCTTGGTTTAGATACAGAGT
TTAAAAGGCTTGTGGTTGAAACTACTGCAAATCAGGATCCACTGGTGACT
AAAGCCCCAACTCTGGTTCCTTTGCTTGGTATAGATGTTTGGGAGCATGC
ATACTACCTACAGTACAAGAATGTCAAACCAGATTATCTGAAAAACATTT
GGAACGTAATGAACTGGAAGTATGCTAGTGATGTGT
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