CX069593

Overview
NameCX069593
Unique NameCX069593
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length844
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX069593 vs. ExPASy Swiss-Prot
Match: CSN2_MOUSE (COP9 signalosome complex subunit 2 OS=Mus musculus GN=Cops2 PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 5.500e-13
Identity = 50/195 (25.64%), Postives = 87/195 (44.62%), Query Frame = 1
Query:   43 PAQQGTIDLQSGILHAEEKDYKTAYSYXXXXXXXXNALEDPRAVFSLKYMLLCKIMVSQADDVAGIISSKAGLQYVGPELDAMKAVADAHSKRSLKLFETALRDFKAQLEEDPIVHRHLSSLYDTLLEQNLCRLIEPYSRVEIAHIAELIELPIDHVEKKLSQMILDKKFAGTLDQGVGCLIIFEDPKADAIYPA 627
            P   G I    G +H  E +++ A++         +    PR    LKY++L  +++     +    S +A      PE+ AM  +  A+    +  FE  L+   + + +DP +  H+  L   +  Q L +LI+PY+R+ I  I++ + + +  VE  L Q ILD    G +DQ    L +    +  A Y A
Sbjct:  231 PLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANMLMKSG--INPFDSQEAKPYKNDPEILAMTNLVSAYQNNDITEFEKILKTNHSNIMDDPFIREHIEELLRNIRTQVLIKLIKPYTRIHIPFISKELNIDVADVESLLVQCILDNTIHGRIDQVNQLLELDHQKRGGARYTA 423          
BLAST of CX069593 vs. ExPASy Swiss-Prot
Match: CSN2_HUMAN (COP9 signalosome complex subunit 2 OS=Homo sapiens GN=COPS2 PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 5.500e-13
Identity = 50/195 (25.64%), Postives = 87/195 (44.62%), Query Frame = 1
Query:   43 PAQQGTIDLQSGILHAEEKDYKTAYSYXXXXXXXXNALEDPRAVFSLKYMLLCKIMVSQADDVAGIISSKAGLQYVGPELDAMKAVADAHSKRSLKLFETALRDFKAQLEEDPIVHRHLSSLYDTLLEQNLCRLIEPYSRVEIAHIAELIELPIDHVEKKLSQMILDKKFAGTLDQGVGCLIIFEDPKADAIYPA 627
            P   G I    G +H  E +++ A++         +    PR    LKY++L  +++     +    S +A      PE+ AM  +  A+    +  FE  L+   + + +DP +  H+  L   +  Q L +LI+PY+R+ I  I++ + + +  VE  L Q ILD    G +DQ    L +    +  A Y A
Sbjct:  231 PLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANMLMKSG--INPFDSQEAKPYKNDPEILAMTNLVSAYQNNDITEFEKILKTNHSNIMDDPFIREHIEELLRNIRTQVLIKLIKPYTRIHIPFISKELNIDVADVESLLVQCILDNTIHGRIDQVNQLLELDHQKRGGARYTA 423          
BLAST of CX069593 vs. ExPASy Swiss-Prot
Match: CSN2_DANRE (COP9 signalosome complex subunit 2 OS=Danio rerio GN=cops2 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 5.500e-13
Identity = 50/195 (25.64%), Postives = 87/195 (44.62%), Query Frame = 1
Query:   43 PAQQGTIDLQSGILHAEEKDYKTAYSYXXXXXXXXNALEDPRAVFSLKYMLLCKIMVSQADDVAGIISSKAGLQYVGPELDAMKAVADAHSKRSLKLFETALRDFKAQLEEDPIVHRHLSSLYDTLLEQNLCRLIEPYSRVEIAHIAELIELPIDHVEKKLSQMILDKKFAGTLDQGVGCLIIFEDPKADAIYPA 627
            P   G I    G +H  E +++ A++         +    PR    LKY++L  +++     +    S +A      PE+ AM  +  A+    +  FE  L+   + + +DP +  H+  L   +  Q L +LI+PY+R+ I  I++ + + +  VE  L Q ILD    G +DQ    L +    +  A Y A
Sbjct:  231 PLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANMLMKSG--INPFDSQEAKPYKNDPEILAMTNLVSAYQNNDITEFEKILKTNHSNIMDDPFIREHIEELLRNIRTQVLIKLIKPYTRIHIPFISKELNIDVADVESLLVQCILDNTINGRIDQVNQLLELDHQKRGGARYTA 423          
BLAST of CX069593 vs. ExPASy Swiss-Prot
Match: CSN2_DROME (COP9 signalosome complex subunit 2 OS=Drosophila melanogaster GN=alien PE=1 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 1.769e-11
Identity = 45/176 (25.57%), Postives = 76/176 (43.18%), Query Frame = 1
Query:   43 PAQQGTIDLQSGILHAEEKDYKTAYSYXXXXXXXXNALEDPRAVFSLKYMLLCKIMVSQADDVAGIISSKAGLQYVGPELDAMKAVADAHSKRSLKLFETALRDFKAQLEEDPIVHRHLSSLYDTLLEQNLCRLIEPYSRVEIAHIAELIELPIDHVEKKLSQMILDKKFAGTLDQ 570
            P   G I    G +H  E +++ A++         +    PR    LKY++L  +++     +    S +A      PE+ AM  + +++    +  FET LR  ++ +  D  +  H+  L   +  Q L +LI PY  + I  IA  + +    VE  L   ILD    G +DQ
Sbjct:  232 PLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANMLMKSG--INPFDSQEAKPYKNDPEILAMTNLVNSYQNNDINEFETILRQHRSNIMADQFIREHIEDLLRNIRTQVLIKLIRPYKNIAIPFIANALNIEPAEVESLLVSCILDDTIKGRIDQ 405          
BLAST of CX069593 vs. ExPASy Swiss-Prot
Match: CSN2_NEUCR (COP9 signalosome complex subunit 2 OS=Neurospora crassa GN=csn-2 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.781e-11
Identity = 52/209 (24.88%), Postives = 95/209 (45.45%), Query Frame = 1
Query:   43 PAQQGTIDLQSGILHAEEKDYKTAYSYXXXXXXXXNALEDPRAVFSLKYMLLCKIMVSQADDVAGIISSKAGLQYVGPELDAMKAVADAHSKRSLKLFETALRDFKAQLEEDPIVHRHLSSLYDTLLEQNLCRLIEPYSRVEIAHIAELIELPIDHVEKKLSQMILDKKFAGTLDQGVGCLIIFEDPKADAIYPATL--ETISNMGKVV 663
            P  QG I    G +H  E+++K A S         +   D R +  LKY+LL  +++    D+    S +       P + AM  + DA+ +  +  +E  L+     L  DP +  ++  +   +  + + +LI PY+R+ I+ +AE + +    V   LS +I+D +  G +D+  G L +     AD +   T+  E + N+   V
Sbjct:  234 PKIQGVIRECGGKMHMSEENWKEAQSDFFEAFRNYDEAGDLRRIQVLKYLLLTTMLMKS--DINPFDSQEMKPYRNDPRIFAMTELVDAYQRDDIYRYEDVLQK-NTDLLADPFIAENIDEVTRNMRTKGVVKLIAPYTRMRISWLAERLRITEPEVMDILSFLIVDGRVKGRIDEHKGVLELESREDADHVQAITVLSEAVGNLFNAV 439          
The following BLAST results are available for this feature:
BLAST of CX069593 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
CSN2_MOUSE5.500e-1325.64COP9 signalosome complex subunit 2 OS=Mus musculus... [more]
CSN2_HUMAN5.500e-1325.64COP9 signalosome complex subunit 2 OS=Homo sapiens... [more]
CSN2_DANRE5.500e-1325.64COP9 signalosome complex subunit 2 OS=Danio rerio ... [more]
CSN2_DROME1.769e-1125.57COP9 signalosome complex subunit 2 OS=Drosophila m... [more]
CSN2_NEUCR8.781e-1124.88COP9 signalosome complex subunit 2 OS=Neurospora c... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_11E09_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-11E09-J17-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069593 ID=CX069593; Name=CX069593; organism=Citrus sinensis; type=EST; length=844bp
CTCACAGCAGCGAGGACAGCTGCAAATGCTATATATGTGCCACCGGCTCA
ACAAGGCACTATAGATTTGCAGAGCGGAATTTTACATGCTGAAGAGAAGG
ATTACAAAACTGCTTATAGCTATTTCTTTGAAGCATTTGAGGCTTTCAAT
GCTCTTGAAGATCCCAGGGCTGTTTTTAGTCTAAAATACATGTTGCTTTG
CAAGATCATGGTGAGCCAAGCTGATGATGTTGCTGGGATAATTTCTTCTA
AGGCTGGCCTGCAGTATGTTGGGCCAGAATTAGATGCTATGAAAGCTGTT
GCTGATGCTCATTCCAAGAGGTCCTTGAAGTTGTTTGAGACTGCTCTACG
TGATTTCAAGGCTCAGCTTGAGGAAGACCCAATTGTGCATAGGCACCTCT
CATCTCTTTATGACACACTTCTGGAACAAAACCTGTGCAGGTTGATTGAG
CCTTACTCAAGGGTAGAGATAGCACACATTGCAGAGCTCATTGAGCTGCC
GATAGATCATGTAGAGAAAAAGTTATCCCAAATGATTTTGGACAAGAAAT
TTGCTGGGACATTAGATCAGGGCGTTGGATGCCTCATCATATTTGAAGAT
CCTAAGGCAGATGCCATCTATCCTGCCACTTTAGAAACCATTTCCAACAT
GGGCAAGGTTGTGGACAGCCTTTTTGTGAGGTCTGCCAAGATTATGGCAT
GAGGGTTTCTTTTGTGTTTTTTGGTGGGCACTCCTTAGTTCATGGTTCTG
CTTCCTGTCTTTCTATTGTTTCTGAATTATTGCAGACTTGATAATGGATA
TGTTAGTAGGAAACTTGATTTTACATTCACTGTAACTGCATTAA
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