CX069560

Overview
NameCX069560
Unique NameCX069560
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length832
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX069560 vs. ExPASy Swiss-Prot
Match: PRS6B_DICDI (26S protease regulatory subunit 6B homolog OS=Dictyostelium discoideum GN=psmC4 PE=1 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 6.990e-37
Identity = 78/186 (41.94%), Postives = 119/186 (63.98%), Query Frame = 3
Query:  273 KEELQLLQEPGSYVGEVVKVMGKNKVLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSI 830
            +EE++ ++     +G++++++  N  +V+        V            PS  VAL+  S  L   LP + D  ++L+  ++ P  +Y  IGG D Q +E++E +ELP+ H  L++ +GI  P+GVLLYGPPGTGKT+LA+AVAHHT   FIRV GSE VQKY+GEG R+VR++F +ARE++P+I
Sbjct:   61 QEEVKRIRSVPLLIGQLLEMVDSNTGIVQSTSGSTLCVRILSTIDRELLKPSASVALQRHSNALVDTLPPESDSSIHLLGADEKPSESYSDIGGGDIQKQEMREAVELPLTHHNLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTSAAFIRVVGSEFVQKYLGEGPRLVRDVFRLARENSPAI 246          
BLAST of CX069560 vs. ExPASy Swiss-Prot
Match: PRS6A_RAT (26S protease regulatory subunit 6A OS=Rattus norvegicus GN=Psmc3 PE=2 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 5.917e-36
Identity = 93/273 (34.07%), Postives = 148/273 (54.21%), Query Frame = 3
Query:   42 LVHSERMAAVGIETKQP-------ESAAPEEVCAAKGASKQGEGLRQYYLQHIHELQLQVRQKTHNLNRLEAQRNE---LNSRVRMLKEELQLLQEPGSYVGEVVKVMGKNKVLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSI 830
            +   E+MA V  E +Q        + +  E V   +    + + ++   L+  HELQ    +   N  +++  +     +++ + +L  +    +E G+ +    +  GK  V +K      Y +            P   V +  DSY++   LP++ D  V  M+V++ P   Y  IGGLD+QI+E+ E I LP+ H E FE+LGI  PKGVL+YGPPGTGKTLLARA A  T  TF++++G +LVQ +IG+G+++VR+ F +A+E APSI
Sbjct:   11 VTRQEKMATVWDEAEQDGIGEEVLKMSTEEIVQRTRLLDSEIKIMKSEVLRVTHELQAMKDKIKENSEKIKVNKTLPYLVSNVIELLDVDPNDQEEDGANIDLDSQRKGKCAV-IKTSTRQTYFLPVIGLVDAEKLKPGDLVGVNKDSYLILETLPTEYDSRVKAMEVDERPTEQYSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPSI 282          
BLAST of CX069560 vs. ExPASy Swiss-Prot
Match: PRS6A_HUMAN (26S protease regulatory subunit 6A OS=Homo sapiens GN=PSMC3 PE=1 SV=3)

HSP 1 Score: 150.984 bits (380), Expect = 7.728e-36
Identity = 92/273 (33.70%), Postives = 148/273 (54.21%), Query Frame = 3
Query:   42 LVHSERMAAVGIETKQP-------ESAAPEEVCAAKGASKQGEGLRQYYLQHIHELQLQVRQKTHNLNRLEAQRNE---LNSRVRMLKEELQLLQEPGSYVGEVVKVMGKNKVLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSI 830
            +   E+MA V  E +Q        + +  E +   +    + + ++   L+  HELQ    +   N  +++  +     +++ + +L  +    +E G+ +    +  GK  V +K      Y +            P   V +  DSY++   LP++ D  V  M+V++ P   Y  IGGLD+QI+E+ E I LP+ H E FE+LGI  PKGVL+YGPPGTGKTLLARA A  T  TF++++G +LVQ +IG+G+++VR+ F +A+E APSI
Sbjct:   11 VTRQEKMATVWDEAEQDGIGEEVLKMSTEEIIQRTRLLDSEIKIMKSEVLRVTHELQAMKDKIKENSEKIKVNKTLPYLVSNVIELLDVDPNDQEEDGANIDLDSQRKGKCAV-IKTSTRQTYFLPVIGLVDAEKLKPGDLVGVNKDSYLILETLPTEYDSRVKAMEVDERPTEQYSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPSI 282          
BLAST of CX069560 vs. ExPASy Swiss-Prot
Match: PRS6A_MOUSE (26S protease regulatory subunit 6A OS=Mus musculus GN=Psmc3 PE=2 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 1.009e-35
Identity = 93/273 (34.07%), Postives = 147/273 (53.85%), Query Frame = 3
Query:   42 LVHSERMAAVGIETKQP-------ESAAPEEVCAAKGASKQGEGLRQYYLQHIHELQLQVRQKTHNLNRLEAQRNE---LNSRVRMLKEELQLLQEPGSYVGEVVKVMGKNKVLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSI 830
            +   E+MA V  E +Q        + +  E V   +    + + ++   L+  HELQ    +   N  +++  +     +++ + +L  +    +E G+ +    +  GK  V +K      Y +            P   V +  DSY++   LP+  D  V  M+V++ P   Y  IGGLD+QI+E+ E I LP+ H E FE+LGI  PKGVL+YGPPGTGKTLLARA A  T  TF++++G +LVQ +IG+G+++VR+ F +A+E APSI
Sbjct:   14 VTRQEKMATVWDEAEQDGIGEEVLKMSTEEIVQRTRLLDSEIKIMKSEVLRVTHELQAMKDKIKENSEKIKVNKTLPYLVSNVIELLDVDPNDQEEDGANIDLDSQRKGKCAV-IKTSTRQTYFLPVIGLVDAEKLKPGDLVGVNKDSYLILETLPTDYDSRVKAMEVDERPTEQYSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPSI 285          
BLAST of CX069560 vs. ExPASy Swiss-Prot
Match: PR6AA_XENLA (26S protease regulatory subunit 6A-A OS=Xenopus laevis GN=psmc3-A PE=2 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 1.318e-35
Identity = 85/229 (37.12%), Postives = 132/229 (57.64%), Query Frame = 3
Query:  153 LRQYYLQHIHELQLQVRQKTHNLNRLEAQRNE---LNSRVRMLKEELQLLQEPGSYVGEVVKVMGKNKVLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSI 830
            ++   L+  HELQ    +   N  +++  +     +++ + +L  +    +E G+ +    +  GK  V +K      Y +            P   V +  DSY++   LP++ D  V  M+V++ P   Y  IGGLD+QI+E+ E I LP+ H E FE+LGI  PKGVL+YGPPGTGKTLLARA A  T  TF++++G +LVQ +IG+G+++VR+ F +A+E APSI
Sbjct:   39 MKSEVLRVTHELQAMRDKIKENSEKIKVNKTLPYLVSNVIELLDVDPNDQEEDGANIDLDSQRKGKCAV-IKTSTRQTYFLPVIGLVDAEKLKPGDLVGVNKDSYLILETLPTEYDSRVKAMEVDERPTEQYSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPSI 266          
BLAST of CX069560 vs. ExPASy Swiss-Prot
Match: PRS6A_ENCCU (26S protease regulatory subunit 6A OS=Encephalitozoon cuniculi GN=RPT5 PE=1 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 2.249e-35
Identity = 88/242 (36.36%), Postives = 134/242 (55.37%), Query Frame = 3
Query:  111 EVCAAKGASKQGEGLRQYYLQHIHELQLQVRQKTHNLNRLEAQRNELNSRVRMLKEELQLLQEPGSYVGEVVKVMGKNKVLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVN--LMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSI 830
            E   A   S  GE L +   + I  L  + R     +N ++   +  N+ +    E ++L ++    VG VV+V+ ++  +V         +            P   VAL  D+ ++   LP   D  V   ++K +  PD TY+ IGGL++QI+E+ E I L + HPE FE L I  PKGVL+YGPPGTGKTL+ARA A  T+ TF++++G +LVQ YIG+G+R+VR+ F +A+E  P+I
Sbjct:    4 EELEAMDQSNPGEFLERVR-EKIRMLNSETRILQSRVNTIKHDISTKNASIAENMERIRLNKQLPYLVGNVVEVLDEHSGVVNASTRMSSYLPITGLIPNSELRPGDLVALHKDTNIVFEKLPPDYDMKVGGMVLKSDAKPDETYEDIGGLERQIEELNEAIVLSLTHPERFEKLNIKPPKGVLMYGPPGTGKTLMARACASKTNATFLKLAGPQLVQMYIGDGARLVRDAFALAKERKPTI 244          
BLAST of CX069560 vs. ExPASy Swiss-Prot
Match: PR6AB_XENLA (26S protease regulatory subunit 6A-B OS=Xenopus laevis GN=psmc3-B PE=2 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 2.249e-35
Identity = 85/229 (37.12%), Postives = 132/229 (57.64%), Query Frame = 3
Query:  153 LRQYYLQHIHELQLQVRQKTHNLNRLEAQRNE---LNSRVRMLKEELQLLQEPGSYVGEVVKVMGKNKVLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSI 830
            ++   L+  HELQ    +   N  +++  +     +++ + +L  +    +E G+ +    +  GK  V +K      Y +            P   V +  DSY++   LP++ D  V  M+V++ P   Y  IGGLD+QI+E+ E I LP+ H E FE+LGI  PKGVL+YGPPGTGKTLLARA A  T  TF++++G +LVQ +IG+G+++VR+ F +A+E APSI
Sbjct:   20 MKSEVLRVTHELQAMRDKIKENSEKIKVNKTLPYLVSNVIELLDVDPNDQEEDGANIDLDSQRKGKCAV-IKTSTRQTYFLPVIGLVDAEKLKPGDLVGVNKDSYLILETLPTEYDSRVKAMEVDERPTEQYSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFSLAKEKAPSI 247          
BLAST of CX069560 vs. ExPASy Swiss-Prot
Match: PRS6A_YEAST (26S protease regulatory subunit 6A OS=Saccharomyces cerevisiae GN=RPT5 PE=1 SV=3)

HSP 1 Score: 147.517 bits (371), Expect = 8.545e-35
Identity = 87/241 (36.10%), Postives = 133/241 (55.19%), Query Frame = 3
Query:  186 LQLQVRQKTHNLNRLEAQRNELNSRVRMLKEELQLLQEPGSYVGEVVKVMGKNKVLVKVHPE---------------GKYVVXXXXXXXXXXXX-----------PSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSI 830
            L  ++R     L RL  + N +  +++  KE+++  ++    V  VV+VM  N++  K + E               GK  V                       P+  V +  DSY++   LPS+ D  V  M+V++ P  TY  +GGLD+QI+E+ E I LP+K  + F+ +GI  PKG L+YGPPGTGKTLLARA A  T+ TF++++  +LVQ YIGEG+++VR+ F +A+E AP+I
Sbjct:   37 LDNEIRIFRSELQRLSHENNVMLEKIKDNKEKIKNNRQLPYLVANVVEVMDMNEIEDKENSESTTQGGNVNLDNTAVGKAAVVKTSSRQTVFLPMVGLVDPDKLKPNDLVGVNKDSYLILDTLPSEFDSRVKAMEVDEKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQLVQMYIGEGAKLVRDAFALAKEKAPTI 277          
BLAST of CX069560 vs. ExPASy Swiss-Prot
Match: PRS6A_DICDI (26S protease regulatory subunit 6A homolog OS=Dictyostelium discoideum GN=psmC3 PE=1 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 2.486e-34
Identity = 81/225 (36.00%), Postives = 130/225 (57.78%), Query Frame = 3
Query:  183 ELQLQVRQKTHNLNRLEAQRNELNSRVRMLKEELQLLQEPGSYVGEVVKVM-----GKNK----VLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSI 830
            E + +V +  H    LE   + +  R++   ++LQ+  +    V  VV+++     G+ +    V+VK        +            P   V +  DSY++   LP + D  V  M++++ P   Y  IGGLD+QI+E+ E + LP+ H E FES+GI  PKGVL+YGPPGTGKTLLARA A  T+ T+++++G +LVQ +IG+G+++VR+ F +A+E  P+I
Sbjct:   42 ENETKVLRSEHISKHLEM--DSIQKRIKENNDKLQVNTQLPHLVANVVEIIDMVLDGETQPSKCVVVKASTRQTIFLAYPGIVDVDKLRPGDLVGINKDSYIILDTLPPEYDSRVKAMEIDEKPTEEYSDIGGLDKQIQELVEAVVLPMTHKERFESIGIKPPKGVLMYGPPGTGKTLLARACAAQTNSTYLKLAGPQLVQMFIGDGAKLVRDAFALAKEKGPTI 264          
BLAST of CX069560 vs. ExPASy Swiss-Prot
Match: PRS6A_BRACM (26S protease regulatory subunit 6A homolog OS=Brassica campestris GN=TBP1 PE=2 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 3.247e-34
Identity = 80/236 (33.90%), Postives = 131/236 (55.51%), Query Frame = 3
Query:  186 LQLQVRQKTHNLNRLEAQRNELNSRVRMLKEELQLLQEPGSYVGEVVKVMGKNK---------------------VLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSI 830
            L+ ++R    +  R   + +    +++  +E+++L ++    VG +V+++  N                      V++K        +            P   V +  DSY++   LPS+ D  V  M+V++ P   Y+ IGGL++QI+E+ E I LP+ H E FE LG+  PKGVLLYGPPGTGKTL+ARA A  T+ TF++++G +LVQ +IG+G+++VR+ F +A+E AP I
Sbjct:   32 LENEIRILKEDAQRTNLECDSYKEKIKENQEKIKLNKQLPYLVGNIVEILEMNPEDDAEEDGANIDLDSQRKGKCVVLKTSTRQTIFLPVVGLVDPDSLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFEKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKAPCI 267          
The following BLAST results are available for this feature:
BLAST of CX069560 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 366
Match NameE-valueIdentityDescription
PRS6B_DICDI6.990e-3741.9426S protease regulatory subunit 6B homolog OS=Dict... [more]
PRS6A_RAT5.917e-3634.0726S protease regulatory subunit 6A OS=Rattus norve... [more]
PRS6A_HUMAN7.728e-3633.7026S protease regulatory subunit 6A OS=Homo sapiens... [more]
PRS6A_MOUSE1.009e-3534.0726S protease regulatory subunit 6A OS=Mus musculus... [more]
PR6AA_XENLA1.318e-3537.1226S protease regulatory subunit 6A-A OS=Xenopus la... [more]
PRS6A_ENCCU2.249e-3536.3626S protease regulatory subunit 6A OS=Encephalitoz... [more]
PR6AB_XENLA2.249e-3537.1226S protease regulatory subunit 6A-B OS=Xenopus la... [more]
PRS6A_YEAST8.545e-3536.1026S protease regulatory subunit 6A OS=Saccharomyce... [more]
PRS6A_DICDI2.486e-3436.0026S protease regulatory subunit 6A homolog OS=Dict... [more]
PRS6A_BRACM3.247e-3433.9026S protease regulatory subunit 6A homolog OS=Bras... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_11C09_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-11C09-F17-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069560 ID=CX069560; Name=CX069560; organism=Citrus sinensis; type=EST; length=832bp
GAGACTTGATCCGAAAGACAATTAGATTCGAACAAATCGAACTCGTTCAC
TCGGAAAGAATGGCCGCTGTAGGAATCGAAACGAAGCAGCCGGAATCGGC
GGCGCCAGAGGAGGTGTGTGCGGCGAAAGGAGCATCGAAACAAGGAGAGG
GATTGAGGCAATACTACCTCCAACACATTCACGAACTCCAGCTCCAAGTC
CGTCAAAAAACCCACAATCTCAATCGCCTCGAAGCCCAGCGTAACGAACT
CAATTCTAGAGTGCGGATGCTTAAAGAAGAATTACAGCTTCTTCAAGAGC
CTGGATCCTATGTCGGTGAAGTTGTTAAAGTTATGGGAAAAAATAAGGTT
CTTGTTAAGGTTCATCCTGAGGGGAAATATGTTGTTGATATTGATAAAAG
TATTGATATAACCAAGATCACTCCGTCAACAAGAGTTGCACTTCGTAATG
ACAGCTATGTTCTTCATTTGATCCTGCCAAGCAAAGTAGATCCCCTGGTC
AACCTTATGAAGGTTGAAAAGGTCCCTGATTCTACATATGACATGATTGG
TGGCCTTGATCAGCAAATTAAGGAGATCAAGGAGGTCATTGAGCTTCCTA
TCAAACATCCCGAATTGTTCGAGTCTCTTGGAATAGCTCAACCCAAGGGT
GTATTGCTATATGGACCACCTGGTACTGGCAAAACACTGTTGGCTAGAGC
TGTGGCTCATCATACTGATTGTACTTTCATCAGGGTTTCTGGTTCTGAAT
TAGTCCAGAAATACATTGGAGAAGGCTCCAGAATGGTTAGAGAACTTTTT
GTTATGGCAAGGGAACATGCTCCGTCTATCAT
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